LOCUS       NZ_CP043666             4593 bp    DNA     circular CON 03-JAN-2024
DEFINITION  Salmonella enterica subsp. enterica serovar Kentucky strain 161365
            plasmid unnamed2, complete sequence.
ACCESSION   NZ_CP043666
VERSION     NZ_CP043666.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN12688791
            Assembly: GCF_009667765.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. enterica serovar Kentucky
  ORGANISM  Salmonella enterica subsp. enterica serovar Kentucky
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 4593)
  AUTHORS   Cohen,E., Davidovich,M., Rokney,A., Valinsky,L., Rahav,G. and
            Gal-Mor,O.
  TITLE     Emergence of new variants of antibiotic resistance genomic islands
            among multidrug-resistant Salmonella enterica in poultry
  JOURNAL   Environ Microbiol 22 (1), 413-432 (2020)
   PUBMED   31715658
REFERENCE   2  (bases 1 to 4593)
  AUTHORS   Cohen,E. and Gal-Mor,O.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-SEP-2019) The Infectious Diseases Research Laboratory,
            Sheba Medical Center, Tel Hashomer, Tel Hashomer 5262100, Israel
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.4.3
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 128.4585x
            Sequencing Technology :: Illumina & Oxford Nanopore MiniION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 01/03/2024 06:24:15
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,764
            CDSs (total)                      :: 4,643
            Genes (coding)                    :: 4,525
            CDSs (with protein)               :: 4,525
            Genes (RNA)                       :: 121
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 84
            ncRNAs                            :: 15
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 41 of 118
            Pseudo Genes (incomplete)         :: 83 of 118
            Pseudo Genes (internal stop)      :: 22 of 118
            Pseudo Genes (multiple problems)  :: 26 of 118
            Pseudo Genes (short protein)      :: 1 of 118
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP043666.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4593
                     /organism="Salmonella enterica subsp. enterica serovar
                     Kentucky"
                     /mol_type="genomic DNA"
                     /strain="161365"
                     /serovar="Kentucky"
                     /isolation_source="animal"
                     /sub_species="enterica"
                     /db_xref="taxon:192955"
                     /plasmid="unnamed2"
                     /geo_loc_name="Israel"
                     /lat_lon="31.0461 N 34.8516 E"
                     /collection_date="2015-07-01"
     gene            join(4195..4593,1..441)
                     /locus_tag="F1B86_RS23705"
                     /old_locus_tag="F1B86_24045"
     CDS             join(4195..4593,1..441)
                     /locus_tag="F1B86_RS23705"
                     /old_locus_tag="F1B86_24045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001354646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_001354646.1"
                     /translation="MLTLFIFFVLLIAACFFCFAPPRRGYDRNEIIPYKIKLSINKYRL
                     YIYSSGKVRQYLLFLVILSLYYSIAEPFKSELIKNISYSLMAAFIFDTGLNFSKENITK
                     GVISTRWHNDLYSSFERMKAINKIYYPSNKEINTEGLSKAITSSLFNDDANSFAKRDFR
                     LMWDLSSEKYLSYKEIIIRKGDKLDAVCLRFINDDYKFLVNFNRDEEVFKYFPSIMQPS
                     LKTYRALSRLVNSIKDPSRFKFTTESLEMELLEYLELRNELFNDIEEVMGSYAQRAP"
                     /name="hypothetical protein"
     gene            complement(1129..1362)
                     /locus_tag="F1B86_RS23710"
                     /old_locus_tag="F1B86_24055"
     CDS             complement(1129..1362)
                     /locus_tag="F1B86_RS23710"
                     /old_locus_tag="F1B86_24055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000137438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="WP_000137388.1"
                     /translation="MTELEGHLLNALEHLQQDYMRRLNEWESAFAELQKMHAVTQQNNA
                     ILNERVVNLSQQVQLLAGQVDRLSRLFITNNR"
                     /name="MbeD family mobilization/exclusion protein"
     gene            complement(1369..1929)
                     /locus_tag="F1B86_RS23715"
                     /old_locus_tag="F1B86_24060"
     CDS             complement(1369..1929)
                     /locus_tag="F1B86_RS23715"
                     /old_locus_tag="F1B86_24060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000067488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeB family mobilization protein"
                     /protein_id="WP_000067488.1"
                     /translation="MSNLLQMGTDFEKKLKERAASTENMLNSEFRKLEESVDKALSLNR
                     QKIRDAISEHTTSVKQQLDTLSTTVSTQLSTTEAELSRQQKNLLWQVIKGRVLFPALTA
                     LSVTGGIFLGCWGLIQWQESRIAKNILTIREQENTLAKLEAKTWGVTFVNGENGKFLVL
                     PDGVKGENTWTVGDKNAVRLVRE"
                     /name="MbeB family mobilization protein"
     gene            complement(<1964..2617)
                     /locus_tag="F1B86_RS24125"
                     /old_locus_tag="F1B86_24065"
                     /pseudo=""
     CDS             complement(<1964..2617)
                     /locus_tag="F1B86_RS24125"
                     /old_locus_tag="F1B86_24065"
                     /inference="COORDINATES: protein motif:HMM:NF015397.4"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            complement(2607..2930)
                     /locus_tag="F1B86_RS23725"
                     /old_locus_tag="F1B86_24070"
     CDS             complement(2607..2930)
                     /locus_tag="F1B86_RS23725"
                     /old_locus_tag="F1B86_24070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000956000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="WP_001677263.1"
                     /translation="MLTIRVSDEEHARLLERCEGKRLAEWMRRVCLGEPVARTGKLPTL
                     SPPLLRHLAAIGNNLNQTARKVNSGHWSSIDRVHVVAALMAIEGELRQLRQAVREQGGR
                     DDS"
                     /name="MobC family plasmid mobilization relaxosome protein"
     gene            2993..3184
                     /locus_tag="F1B86_RS23730"
                     /old_locus_tag="F1B86_24075"
     CDS             2993..3184
                     /locus_tag="F1B86_RS23730"
                     /old_locus_tag="F1B86_24075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000165979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_000165986.1"
                     /translation="MTKQEKTALNMARFIRSQTLTLLEKLNELDADEQADICESLHDHA
                     DELYRSCLARFGDDGESN"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            3854..4003
                     /locus_tag="F1B86_RS24185"
     CDS             3854..4003
                     /locus_tag="F1B86_RS24185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001326446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_032194431.1"
                     /translation="MHEPPVQPDRCALSGNYRLESNPERHVKTPLAAAIGNRLEELVLK
                     LCAG"
                     /name="hypothetical protein"
     Typing          complement(3273..3357)
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="3.03e-37"
     Typing          3368..3923
                     /name="rep_cluster_2350"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="93.907"
                     /coverage="99.0"
                     /evalue="0.0"
     Typing          complement(1032..2617)
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 aaagagataa acacagaagg tctatccaaa gccatcacat catctctttt caatgatgac
       61 gcgaactcgt tcgcaaagag agattttcgc ttgatgtggg acttatcttc tgaaaaatat
      121 ctttcctata aagaaataat aataagaaaa ggcgataagc ttgacgctgt atgcttgaga
      181 tttataaatg atgactacaa gtttttagtt aatttcaaca gagatgaaga ggttttcaaa
      241 tactttccat ctataatgca accttcactc aaaacatata gagcgttatc aagactagta
      301 aactcaatca aagatccttc tagatttaag ttcacgacag agtcattaga aatggagtta
      361 ctagaatact tagagttaag aaatgaatta ttcaatgaca tagaagaagt aatgggtagc
      421 tatgctcaga gggcaccata gttcatgata gccctcgata gtacttactt atatttttag
      481 agaggtttaa gtgtaagtag agggagtaac acctggtttt tcagcatcca ctccaatgaa
      541 tgctgacacc gatacgcgat aattctcttt atcgtagcaa aatcatcctc cagattgcgg
      601 ttgagaatag gttcatggtg cgcaatacga ttgcgcagtt ttctcacggg acttgttagc
      661 agtaatgctt ccccccgggg acaaacgaca gagatataca acaaaggccc gcaattaaaa
      721 tactccgtat ttaccataac gtcgcattgc gcgtaccgct taaacgcgtt cagcgcgatc
      781 acggcagcag acaggtaaaa acagcaacaa accacccgaa aaactgccgc gatcgcgcct
      841 ggtaaatttt aacctcatgc atagttatgc gcgaaactga atgacgatca gtttcgcacg
      901 ttccagccgt cgaacggggc aaaatgggga ggtttggata ttgttaatgc taatgtacgt
      961 acattaacat tggcgccatc cgggtagggc gtgccacaaa ctggctcgat ttcagggggt
     1021 accccggtca catccccatt gacgggccac gccagatccg cgcttcgggt tcctgctctt
     1081 catgccagcg ccgggcaagc tcctgcgcct gacgctcctg ttcatccctt atctgttgtt
     1141 cgtgataaat aaccgactca agcggtcgac ttgtccggct aatagctgca cctgctgact
     1201 caagttcacg acacgctcgt tcagtatcgc gttgttctgt tgcgtaaccg cgtgcatctt
     1261 ctgcaattct gcgaaggcgc tctcccactc gttcagccgc cgcatatagt cctgttgcaa
     1321 atgctctaag gcgttcagca aatgcccttc cagttccgtc atactcgttt actccctgac
     1381 cagcctcacg gcgttcttgt cgcccaccgt ccaggtgttt tcccctttca ccccgtccgg
     1441 cagcaccaga aatttcccgt tctcgccatt gacgaacgtc accccccagg tttttgcctc
     1501 gagtttcgcc agcgtgtttt cctgctctct gatggtcaag atatttttcg caatcctgct
     1561 ttcctgccac tgaatcagcc cccagcaccc caggaaaatg ccgcccgtga cgctgagcgc
     1621 ggtcagcgcc ggaaacagta cccgcccttt gatcacctgc cagagcaggt ttttctgctg
     1681 ccgggacagt tcggcctctg tggtgctgag ctgcgtgctc acggtggtgc tcagcgtatc
     1741 cagttgctgt ttcacggatg ttgtatgttc gctgatagcg tctctgattt tctgcctgtt
     1801 taagctcagt gccttgtcta cagactcttc tagcttcctg aactcgctgt tcagcatgtt
     1861 ctcggtagaa gcggctcgct ctttcagttt cttctcgaag tccgttccca tttgtaaaag
     1921 attgctcata cagcgccccc tttagcctga gattccgccc cccctccggg tcggcaatac
     1981 tgatactgct tctggttgtc ctcaccacct caaaacctgc cgctgtgagc gcctcagtga
     2041 catcctgacg cgtttttatt gctccggcac ggtaaagcgc ctcaagaccc cgtgtaatcg
     2101 cttctgcggc ctcctgtttc gcttttggca gattattcgg tgtgacaagc gtccgtctgt
     2161 tctccggtgc gttcgggtca cgcagcccgt aatgatgatt aaccagcgtc tgccaggcat
     2221 ttatcctcgg cctgtccgca cggtcgtagt acggctggag gcgcttaccg ctctgtagtt
     2281 ccatgttcgg aatgacaaaa ttcagttcga gccgcccctt atcctggtgt tccacccaga
     2341 gaatgctgta ctggtctttt tcgagaccgg gcataagaac acgctcaaag ctcgtcatca
     2401 ctctttcgcg ttcacccggc ggtaactcct tctccgcgaa cgacagaacg cctgacgtgt
     2461 atttcttcga aaatggcgtg gcatcaatga gttcccggat ttcttccggg ttaccccgga
     2521 gcaccgttgc gccttcgcgg ttacgctccc gccccagcag gtaatcgacc gggccacttc
     2581 caccgccttt ccccctggca tgaaatttaa ctatcatccc gtcccccctg ttccctgaca
     2641 gcctgccgca actggcgcaa ttcaccctcg atggccatca gagcggccac cacatgaacc
     2701 cggtcaatcg aagaccagtg gccgctgttc accttccggg ctgtctggtt cagattgttc
     2761 ccgatggcag ccagatgccg cagcaatggc ggcgatagtg tcggcagttt tcctgtgcgc
     2821 gcaaccggct cccccagaca gacccgccgc atccattctg ccagtcgttt accctcgcag
     2881 cgttccagta accgggcgtg ctcctcatcg ctaacccgta tcgtgagcat cttctcgcgt
     2941 ttcatcggta tcattccccc taaaaaatcc cctattaagg agccttaaga ccatgaccaa
     3001 acaggaaaaa acagccctta acatggcccg ctttatcaga agccagacgc tgaccctgct
     3061 ggaaaaactc aacgagctgg acgcggacga acaggcagac atctgcgaat cacttcacga
     3121 ccacgccgac gaactctacc gtagttgcct cgcacgcttc ggcgatgacg gtgaaagcaa
     3181 ctgaaacatg cagctcccgg agacgttcac agcttgcctg tgagcggatg ccgggagcag
     3241 acaagcccgt cagggcgcgt cagcgggttt tagcgggtgt cggggcgcag ccctgaccca
     3301 gtcacgtagc gatagcggag tgtatactgg cttaactatg tggcatcagt gcggattata
     3361 agaaaagtgc accatatgcg gtgtgaaata ccgcacagat gcgtaaggag aaaatgccgc
     3421 atcaggcgct cttccgcttc ctcgctcact gactcgctac gctcggtcgt tcggctgcgg
     3481 cgagcggtat cagctcactc aaagacggtg atgcggttat ccacagaatc aggggataac
     3541 gccaaaagaa acatgtgagc aaaaggccag gaacaggaag aaggccgcgc cgctggcgtt
     3601 tttccatagg ctccgccccc ctgacgagca tcacaaaaac agatgctcaa gtcagaggtg
     3661 gcgaaacccg acaggactat aaagatacca ggcgtttccc cctggaagct ccctcgtgcg
     3721 ctctcctgtt ccgaccctgc cgcttaccgg atacctgtcc gcctttctcc cttcgggaag
     3781 cgtggcgctt tctcatagct cacgctgttg gtatctcggc ccggtgtagg tcgttcgctc
     3841 caagctgggc tgtgtgcacg aaccccccgt tcagcccgac cgctgcgcct tatccggtaa
     3901 ctatcgtctt gagtccaacc cggaaagaca cgtaaaaacg ccactggcag cagccattgg
     3961 taaccgttta gaggagttag tcttgaagtt atgcgccggt taaggctaaa ctgaaaggac
     4021 agatttggtg gctgtgctcc tccaagccag ttaccttggt tcaaagagtt gctgctctga
     4081 gaaccttcga aaagccgcct tgctgggcgg ttttttcgtt tacggacaag actaccttca
     4141 ggatcgttag atctcaagac aatcatgcat agtgagcata cacaggagcc gaacttgctt
     4201 acactgttca tcttttttgt tttattaata gctgcatgtt tcttttgttt tgctccacca
     4261 cgaagaggat atgacagaaa tgagatcatt ccatacaaaa taaaactatc aataaataaa
     4321 tatcgccttt acatatactc atcgggaaag gtaagacaat accttttatt tttagttatt
     4381 ttatcactgt actactccat agcggaacca tttaagtctg agttaataaa aaacatatca
     4441 tattcactga tggctgcatt tatttttgat acagggctta attttagcaa ggagaatata
     4501 actaaaggag tgatttcaac aaggtggcat aatgacctat attcatcatt tgagagaatg
     4561 aaagcaatta ataaaattta ctacccatcc aac
//
