LOCUS       NZ_CP043665             5631 bp    DNA     circular CON 03-JAN-2024
DEFINITION  Salmonella enterica subsp. enterica serovar Kentucky strain 161365
            plasmid unnamed1, complete sequence.
ACCESSION   NZ_CP043665
VERSION     NZ_CP043665.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN12688791
            Assembly: GCF_009667765.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. enterica serovar Kentucky
  ORGANISM  Salmonella enterica subsp. enterica serovar Kentucky
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 5631)
  AUTHORS   Cohen,E., Davidovich,M., Rokney,A., Valinsky,L., Rahav,G. and
            Gal-Mor,O.
  TITLE     Emergence of new variants of antibiotic resistance genomic islands
            among multidrug-resistant Salmonella enterica in poultry
  JOURNAL   Environ Microbiol 22 (1), 413-432 (2020)
   PUBMED   31715658
REFERENCE   2  (bases 1 to 5631)
  AUTHORS   Cohen,E. and Gal-Mor,O.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-SEP-2019) The Infectious Diseases Research Laboratory,
            Sheba Medical Center, Tel Hashomer, Tel Hashomer 5262100, Israel
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.4.3
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 128.4585x
            Sequencing Technology :: Illumina & Oxford Nanopore MiniION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 01/03/2024 06:24:15
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,764
            CDSs (total)                      :: 4,643
            Genes (coding)                    :: 4,525
            CDSs (with protein)               :: 4,525
            Genes (RNA)                       :: 121
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 84
            ncRNAs                            :: 15
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 41 of 118
            Pseudo Genes (incomplete)         :: 83 of 118
            Pseudo Genes (internal stop)      :: 22 of 118
            Pseudo Genes (multiple problems)  :: 26 of 118
            Pseudo Genes (short protein)      :: 1 of 118
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP043665.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..5631
                     /organism="Salmonella enterica subsp. enterica serovar
                     Kentucky"
                     /mol_type="genomic DNA"
                     /strain="161365"
                     /serovar="Kentucky"
                     /isolation_source="animal"
                     /sub_species="enterica"
                     /db_xref="taxon:192955"
                     /plasmid="unnamed1"
                     /geo_loc_name="Israel"
                     /lat_lon="31.0461 N 34.8516 E"
                     /collection_date="2015-07-01"
     gene            join(5476..5631,1..375)
                     /locus_tag="F1B86_RS24070"
     CDS             join(5476..5631,1..375)
                     /locus_tag="F1B86_RS24070"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeB family mobilization protein"
                     /protein_id="WP_001673158.1"
                     /translation="MSNLLQTGAEFEKKLKERAESTEKMLNDEFRKLEESVNRELTSNE
                     SLIRNAINDHTTALKELLERYQKTTVDTMDAHWKTVLKMSVKRWLWLIIVSVLMFATTG
                     SLLWYQGMKINANMNILREQKESLEKLNAKTWGVRYHEDSNGRFLVLPKGMKAETNWTK
                     DNGKLNAVRLVQE"
                     /name="MbeB family mobilization protein"
     gene            382..615
                     /locus_tag="F1B86_RS23670"
                     /old_locus_tag="F1B86_24000"
     CDS             382..615
                     /locus_tag="F1B86_RS23670"
                     /old_locus_tag="F1B86_24000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000137438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="WP_000137437.1"
                     /translation="MTELERHLLNALEQLQQDYMQRLNEWENAFVELQKMFSLTQRDNA
                     MLNGRVMQLSQQVQHLSERTERLSQLYSENRR"
                     /name="MbeD family mobilization/exclusion protein"
     gene            1096..2148
                     /locus_tag="F1B86_RS23675"
                     /old_locus_tag="F1B86_24010"
     CDS             1096..2148
                     /locus_tag="F1B86_RS23675"
                     /old_locus_tag="F1B86_24010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001557502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_001053268.1"
                     /translation="MNLQQRINKLPQLSSSFSFGKDIDNIHSFIFNETSKDKIEDLLRK
                     WVSGNQPCVFGKLASKKIKGLDFHLSIVNSPQLYNDDGHLFDFLRNERVRFKERARRGE
                     VSAHLIYFIHPQLAFARPSEELVDIQKYICSLHMPECYPIKEDVIYTESVPFQDKDGLK
                     IYKAGVNVFYSSAHRTRNHDRRIPGGILISVNAPGHFMRLAIEKGFYKDQEQALADIRN
                     MTIQSVGKGGYSHPEGISTTWHSESNLDRFGCPVHTGNSSYYSGFYHTDVLIPGELTKD
                     ERLLHEIENSDPMIFNWNVLFYVSLEEFPIDDPYYGEFIGIPVDDASMFFNSFQPRKFE
                     NKPLYEKEDD"
                     /name="hypothetical protein"
     gene            2150..3016
                     /locus_tag="F1B86_RS23680"
                     /old_locus_tag="F1B86_24015"
     CDS             2150..3016
                     /locus_tag="F1B86_RS23680"
                     /old_locus_tag="F1B86_24015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001335763.1"
                     /GO_function="GO:0005215 - transporter activity [Evidence
                     IEA]"
                     /GO_process="GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="WP_001335763.1"
                     /translation="MIKGMLFAFLAAFSWGAAIVMSKKGVEELDAGGVFFWQICSAVIL
                     SWIVLFIKRKKLPLNSKAILAYATGVFEPFLAYTFTLYGLYFISAGSASIIFSLESVFI
                     LVLSVLICSVKINSPQYFILFLIGAIVGSILVALPDISNGSNNIVGYCLVVAGVLSAAF
                     YVVISSRLIKSFEPITLLSGQLTFSLILSSLFIFISKSSIYLPLESVIIVFSSGILQYF
                     LAFCFYLNSLRWLPVHLAGIMLYFIPLVALFLSWLFLDEQFTFLQGVGFIVTVLSVYFL
                     NRKYSEE"
                     /name="DMT family transporter"
     gene            3876..4196
                     /locus_tag="F1B86_RS23855"
     CDS             3876..4196
                     /locus_tag="F1B86_RS23855"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_187655770.1"
                     /translation="MDNRVSVFEKGESARRSRTTERSESVSEEAEERLNWHFLLTHLCG
                     ISHRTWRTFHTIRTDAEWLSQYTLRYRYVTGSGLRPDTPKVNGLTRPGGLVCSRHPLTD
                     KL"
                     /name="hypothetical protein"
     gene            complement(4219..4410)
                     /locus_tag="F1B86_RS23690"
                     /old_locus_tag="F1B86_24030"
     CDS             complement(4219..4410)
                     /locus_tag="F1B86_RS23690"
                     /old_locus_tag="F1B86_24030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000165975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_000165975.1"
                     /translation="MTKQEKTALNMARFIRGQTLTLLEKLNELDADEQADICESLHDHA
                     DELYRSCLARFGDDGENR"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            4442..4798
                     /locus_tag="F1B86_RS23695"
                     /old_locus_tag="F1B86_24035"
     CDS             4442..4798
                     /locus_tag="F1B86_RS23695"
                     /old_locus_tag="F1B86_24035"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="WP_000538661.1"
                     /translation="MGVMIPMKRERMLTIRVTDDEHARLLERCEGKQLAVWMRRVCLGE
                     PVARSGKLPTLAPPLLRQLAAIGNNLNQTARKVNSGQWSSGDRVQVVAALMAIGDELRR
                     LRLAVREQGARDDS"
                     /name="MobC family plasmid mobilization relaxosome protein"
     Typing          4044..4125
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="1.3400000000000002e-35"
     Typing          3400..3587
                     /name="rep_cluster_2401"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="4.63e-94"
     Typing          4..719
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="99.0"
                     /evalue="8.900000000000001e-130"
     Typing          4789..5630
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="99.0"
                     /evalue="0.0"
ORIGIN
        1 aacgaccata caacagccct gaaagaactg ctggagaggt atcagaaaac gaccgtcgat
       61 acgatggacg cgcactggaa aaccgtactg aaaatgagcg tgaaacgctg gctgtggctg
      121 attatcgtct cagtactgat gtttgccacg accgggagtc tgctgtggta ccagggcatg
      181 aagataaacg cgaatatgaa tattctccgc gagcagaaag agagtctgga gaagctgaac
      241 gcgaagacat ggggcgtgcg ttatcacgag gacagcaacg gacgttttct ggtgttgccg
      301 aaggggatga aagccgaaac gaactggacg aaggacaacg gcaaactgaa cgcagtgaga
      361 ctggtgcagg agtgacagag catgacggag ctggaaagac atttgctgaa cgcattagag
      421 caactgcaac aggactatat gcagcggctg aacgaatggg agaacgcctt cgtggaattg
      481 cagaaaatgt tttcgcttac gcaacgggac aacgcgatgc tgaacgggcg agtcatgcag
      541 ttgagtcagc aggtgcagca cttgagcgag cggacagaac gcttgagcca gttatacagc
      601 gagaacagga gataagggat gaacggctga tgcaggaacg cgaacatgag ttatctctgg
      661 agcgggagcg tcagccggaa atccaggagc ggacactgga tggcccttcg ctgggatggt
      721 gaaaccatga aaaatgacgt gttcagtgga ttaaggcggg ctaatgtggc ctgtagcatc
      781 tggttgcata ggtattcatg cggttaaaat ttatcaggtg cgatcgcggc agtttttcgg
      841 gtggtttgtt gccattttta cctgtctgct gccgtgatcg caccgaacgc gttttggcgg
      901 tgcgtacaat gcgacgttat ggtaaatgga gcggattttc aggaaggagt gatactaaca
      961 actcgaacac tgtgcaaata atgatttttt taaaatatcg gtaacgataa taaattattt
     1021 cgttttacgc cggtaataaa tataatgtag tttcagtata taaaaaaata tatgaggtgt
     1081 cttgtgggag ctttcatgaa tcttcaacaa cgtataaata aactaccaca attatcatcc
     1141 agtttttcat ttggaaaaga tattgataat attcattcat ttatctttaa cgaaacttct
     1201 aaagataaaa ttgaagattt actaagaaaa tgggtgtcag gcaatcagcc ctgtgtattt
     1261 ggtaaattgg caagcaagaa aattaaaggg cttgatttcc atttatctat tgtaaatagc
     1321 ccccaactat ataatgatga tggtcatttg tttgattttt tgcgtaatga aagagttcgt
     1381 tttaaagaac gcgcaagaag aggagaggtc agtgcgcatc tcatttattt tattcatcca
     1441 caacttgcct ttgctcgtcc atcagaagag ttagtggaca tacaaaaata tatttgttcg
     1501 ctgcatatgc cagagtgcta tccaataaaa gaggatgtta tttatactga aagcgtacca
     1561 tttcaggata aagatgggct aaaaatatat aaggctggtg ttaatgtttt ttactcttct
     1621 gctcatagaa caagaaatca tgatagaaga ataccagggg gaatacttat ttctgtaaat
     1681 gccccggggc attttatgag gctggcgata gaaaaaggtt tctataaaga tcaagaacaa
     1741 gcgttagcgg atattcgtaa catgactatt cagtctgttg gtaagggtgg gtattcacat
     1801 ccggaaggga tttctacaac atggcattca gaatctaatt tggatcgttt tggatgccca
     1861 gtgcacaccg gtaatagttc ttattacagc ggtttttatc atactgatgt attaattcca
     1921 ggagaattaa ctaaggatga aagattgctc catgaaatag aaaatagtga tccaatgatc
     1981 ttcaactgga atgtattgtt ttatgtttca ttagaagagt ttcctataga tgatccttat
     2041 tatggagagt ttattggtat tcctgtagat gatgcatcta tgttttttaa ctcctttcaa
     2101 ccaaggaaat ttgaaaacaa acccctttat gagaaagagg atgattaata tgattaaagg
     2161 aatgcttttt gcttttttag cagcgttctc atggggggca gctatcgtaa tgagcaaaaa
     2221 aggagttgaa gaactagatg ccggaggggt gtttttctgg cagatttgta gtgcagtaat
     2281 actatcttgg atagttcttt ttataaaaag aaaaaaactc ccattaaact caaaagcgat
     2341 acttgcttat gcgacaggcg tttttgaacc attcttagcg tatactttta cactctacgg
     2401 actttatttt atttcagcag gaagcgcatc aattattttt tcacttgaat cagtgtttat
     2461 attggtgttg tctgttctta tttgctcagt taaaattaat tccccgcaat attttatatt
     2521 gttccttata ggtgcaattg ttggcagtat tttggtagcc ttgccagaca tcagtaatgg
     2581 atcgaataat attgttggat attgtcttgt tgttgccggt gtgttatcgg cagcatttta
     2641 tgttgttata tcgtctcgcc ttattaaatc gtttgagcct atcacattat tgagcggaca
     2701 gttgacattc tcccttatac tgtcatcgct ctttattttt atatctaaat catcaattta
     2761 tcttccgttg gaatccgtga ttattgtttt ttcatctgga atattacaat attttttagc
     2821 tttttgtttt tacttgaact ccttgcgttg gctcccagtt catttggcag ggataatgtt
     2881 gtactttatt ccgctagttg cattattttt gtcatggttg tttttggatg aacaattcac
     2941 attcttacag ggggtaggat ttattgtaac tgtgctaagt gtatattttc ttaacagaaa
     3001 atactcagag gagtaacatt ctgttcagga ttgccccccg gcctccatcg ataccgtgcc
     3061 aaatgcacgt aaaaaacggg agcgtttctg gtgtcggaat gtaaccaagg gggtcagagg
     3121 cgcgctaaaa cgctctcagg ggagtcaaat agagacgttt gtaacaaaaa gatcaaagga
     3181 tcctcttgag atcctttttt tctgcgcgta atctgctgcc tgtaaacgaa aaaaccgcct
     3241 tgcagggcgg tttgatcgaa ggttaagtca gcttgcagac tgcttaacca ggtaactgtc
     3301 ttatgcgaga cgagtcacca aaattgttct tctagtgtag ccgcactccg gcagccactt
     3361 caagtactct ctaaatatct cgcacatgac ttttaccaat ggctgctgcc agtggcgctt
     3421 tgtggtgtct tttccgggtt ggacccaaga gaacagttac cggagaaggc gcagcagtcg
     3481 ggctgaacgg ggggttcctg catacagccc agcccggagc gaactgccta agtcgccccg
     3541 agataccaga agacgtgagc tatgagaaag cgccacgtgt cccgtaaggg agaaaggcgg
     3601 aaaaggtatc cggtaatcga tatggcggga acgtgggggc gcaggaggga gcgattcacc
     3661 ggaaacggtg atgatcttta agccacgtcg ggtttcgcca ccgctggcgg atttcatggt
     3721 tgagccgcaa ggctcccaca gatgcaccga aaaagtgtct gttttgtgaa gtccgtcagg
     3781 ggggcggagc ctatggaaaa agcgcctccg gcgcggcctt tcccggggtt tcgttttttg
     3841 cgcacatgtt ctttcctggt ttatccccgg gttctgtgga taacagggtt agcgtttttg
     3901 agaaaggaga gtccgctcgc cgcagccgaa cgaccgagcg tagcgagtca gtgagcgagg
     3961 aagcggaaga gcgcctgaac tggcattttc tccttacgca tctgtgcggc atttcacacc
     4021 ggacatggcg cacttttcat acaatccgca ctgatgccga atggttaagc cagtatacac
     4081 tccgctatcg ctacgtgact gggtcagggc ttcgccccga caccccaaag gtcaacggcc
     4141 tgacgcgccc tggcgggctt gtctgctccc ggcatccgct cacagacaag ctgtgaccgt
     4201 ctccgggagc tgcatgtgtc agcggttttc accgtcatcc ccgaagcgtg cgaggcaact
     4261 gcggtaaagc tcatcggcgt ggtcgtgaag cgattcacag atgtctgcct gttcatccgc
     4321 gtccagttcg ttgagcttct ccagcagcgt taatgtctgg cctctgatga agcgggccat
     4381 gttaagggcg gttttttcct gtttggtcac tgatgcctcc gtgtaagggg gggttctgtt
     4441 catgggggta atgataccga tgaaacgcga gaggatgctc acgatacggg ttactgatga
     4501 tgaacatgcc cggttactgg aacgctgtga gggtaaacaa ctggcggtat ggatgcggcg
     4561 ggtctgcctg ggtgagccgg ttgcccgttc cgggaagctg ccgacactgg caccgccgtt
     4621 actgcgtcag ctggccgcca tcgggaataa ccttaaccag acagcgagga aggtgaacag
     4681 cgggcagtgg tcttccggtg accgggttca ggtggtggcc gcactgatgg ccatcgggga
     4741 tgagctgcgc cggctgcgtc tggcggtcag ggaacagggg gcgcgggatg atagttaagt
     4801 ttcatgccag gggaaaaggt ggtggcagtg gtccggttga ttacctgctg ggaagggagc
     4861 gtaaccggga aggggcaacg gtgcttcagg ggaatccgga agaggtccgg gaactcatcg
     4921 atgccacgcc atttgcgaag aaatacacgt caggtgttct gtcgttcgcg gagaaggagc
     4981 tgccgcctgg agggcgtgaa aaagtgatgg cgagctttga gcgtgtactg atgcccggtc
     5041 tcgagaaaaa tcagtacagc atcctgtggg tggagcacca ggacaaggga cggcttgagc
     5101 tgaattttgt cattccgaac atggagctac agaccggaaa acgcctccag ccgtactacg
     5161 accgggcaga caggccgaga attgatgcct ggcagacgct ggtgaatcac cattacggtc
     5221 tgcatgaccc caacgccccg gagaaccgcc ggacgctgac ccttcctgat aacctgccgg
     5281 aaacgaaaca ggcgcttgct gagggcgtca cacgcgggat agacgcgctt taccatgccg
     5341 gagagataaa aggccgtcag gatgtgattc aggcgctcac agaggcgggg cttgaagtgg
     5401 tcagggtgac gcgaagcagt atcagcattg cagacccgaa cggcgggagg aatatcagac
     5461 tgaaaggagc gttttatgag caatctttta cagacgggcg cggagttcga gaaaaagctg
     5521 aaagagagag ccgaatctac agagaaaatg ctgaacgacg agttcaggaa gctcgaagaa
     5581 tctgtaaaca gggaactgac ctcaaacgaa tctttaatca ggaacgctat c
//
