LOCUS       NZ_CP043663             4018 bp    DNA     circular CON 10-DEC-2023
DEFINITION  Salmonella enterica subsp. enterica serovar Blockley strain 159838
            plasmid unnamed, complete sequence.
ACCESSION   NZ_CP043663
VERSION     NZ_CP043663.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN12688790
            Assembly: GCF_009667745.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. enterica serovar Blockley
  ORGANISM  Salmonella enterica subsp. enterica serovar Blockley
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 4018)
  AUTHORS   Cohen,E., Davidovich,M., Rokney,A., Valinsky,L., Rahav,G. and
            Gal-Mor,O.
  TITLE     Emergence of new variants of antibiotic resistance genomic islands
            among multidrug-resistant Salmonella enterica in poultry
  JOURNAL   Environ Microbiol 22 (1), 413-432 (2020)
   PUBMED   31715658
REFERENCE   2  (bases 1 to 4018)
  AUTHORS   Cohen,E. and Gal-Mor,O.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-SEP-2019) The Infectious Diseases Research Laboratory,
            Sheba Medical Center, Tel Hashomer, Tel Hashomer 5262100, Israel
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.4.3
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 143.4359x
            Sequencing Technology :: Illumina & Oxford Nanopore MiniION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 12/10/2023 12:14:19
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,804
            CDSs (total)                      :: 4,686
            Genes (coding)                    :: 4,577
            CDSs (with protein)               :: 4,577
            Genes (RNA)                       :: 118
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 83
            ncRNAs                            :: 13
            Pseudo Genes (total)              :: 109
            CDSs (without protein)            :: 109
            Pseudo Genes (ambiguous residues) :: 0 of 109
            Pseudo Genes (frameshifted)       :: 46 of 109
            Pseudo Genes (incomplete)         :: 80 of 109
            Pseudo Genes (internal stop)      :: 19 of 109
            Pseudo Genes (multiple problems)  :: 33 of 109
            Pseudo Genes (short protein)      :: 1 of 109
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP043663.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4018
                     /organism="Salmonella enterica subsp. enterica serovar
                     Blockley"
                     /mol_type="genomic DNA"
                     /strain="159838"
                     /serovar="Blockley"
                     /isolation_source="animal"
                     /sub_species="enterica"
                     /db_xref="taxon:57741"
                     /plasmid="unnamed"
                     /geo_loc_name="Israel"
                     /lat_lon="31.0461 N 34.8516 E"
                     /collection_date="2015-04-29"
     gene            complement(join(3850..4018,1..44))
                     /locus_tag="F1B85_RS23840"
                     /old_locus_tag="F1B85_24125"
     CDS             complement(join(3850..4018,1..44))
                     /locus_tag="F1B85_RS23840"
                     /old_locus_tag="F1B85_24125"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_034169353.1"
                     /translation="MGDFERTFGAGADFDRIIDENNSEYFREDRRKTKNSKKKFSSFQD
                     ALVWAKANPGKTIIRSPDGVGFIEK"
                     /name="hypothetical protein"
     gene            complement(299..826)
                     /locus_tag="F1B85_RS23845"
                     /old_locus_tag="F1B85_24130"
     CDS             complement(299..826)
                     /locus_tag="F1B85_RS23845"
                     /old_locus_tag="F1B85_24130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004883515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_016246513.1"
                     /translation="MKCFWACSVSVVLAMSFTVAAAENNDNVTYTKPSAGRDLYLTCKG
                     YQVKGASVINVEKPSYLEGTGEQVEFAIITPVGASDGLKVFFDSWGFSSFGLIESHVMH
                     EHWSLVHVGGRASVKGEKIDYSFVDNQPQEGGSYKPKTGVFLYGCMNSDKRPSWVEKIY
                     TRTGVFRGGIED"
                     /name="hypothetical protein"
     gene            complement(955..1170)
                     /locus_tag="F1B85_RS23850"
                     /old_locus_tag="F1B85_24135"
     CDS             complement(955..1170)
                     /locus_tag="F1B85_RS23850"
                     /old_locus_tag="F1B85_24135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000137421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="WP_072048928.1"
                     /translation="MTELEKQLLSALEQLQQDYSKRLDEWENAFAEWRTMSGLMQRENA
                     ALSERVTGLSRQVQSLSDQLRRLSQG"
                     /name="MbeD family mobilization/exclusion protein"
     gene            complement(1174..1659)
                     /locus_tag="F1B85_RS23855"
                     /old_locus_tag="F1B85_24140"
     CDS             complement(1174..1659)
                     /locus_tag="F1B85_RS23855"
                     /old_locus_tag="F1B85_24140"
                     /inference="COORDINATES: protein motif:HMM:NF016710.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeB family mobilization protein"
                     /protein_id="WP_061390563.1"
                     /translation="MNSLLTLAKDLEQKSKAQQQTTGEMLKAAFSEHEKSVRAELSESE
                     KRISAAILDHDRKLSSAMSQRTKGMLRMISQTWLTIVLVSALLIASSAGILWWQGQQIL
                     DNYTTIQEQKSTQAMLSEKNNGVQLTTCGEERRRCVRVNPEAGRFGEDSSWMILAGK"
                     /name="MbeB family mobilization protein"
     gene            complement(<1694..2398)
                     /locus_tag="F1B85_RS24395"
                     /old_locus_tag="F1B85_24145"
                     /pseudo=""
     CDS             complement(<1694..2398)
                     /locus_tag="F1B85_RS24395"
                     /old_locus_tag="F1B85_24145"
                     /inference="COORDINATES: protein motif:HMM:NF015397.3"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            complement(2337..2660)
                     /locus_tag="F1B85_RS23865"
                     /old_locus_tag="F1B85_24150"
     CDS             complement(2337..2660)
                     /locus_tag="F1B85_RS23865"
                     /old_locus_tag="F1B85_24150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000957083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="WP_024191642.1"
                     /translation="MLTMWVTEDEHRRLLERCEGKQLAAWMRQICLDEKPSRAGKLPSI
                     SPALLRQLAGMGNNLNQIARQVNAGGGTGHDRVQVVAVLMAIDAGLERLRHAVLEKGAD
                     DDR"
                     /name="MobC family plasmid mobilization relaxosome protein"
     gene            3308..3421
                     /locus_tag="F1B85_RS24400"
                     /old_locus_tag="F1B85_24160"
     CDS             3308..3421
                     /locus_tag="F1B85_RS24400"
                     /old_locus_tag="F1B85_24160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007772075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="WP_072035093.1"
                     /translation="MHEPPVQSDRCALSGNYRLESNPERHDKTPLAAATGN"
                     /name="replication initiation protein"
     Typing          complement(2774..2951)
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="87.222"
                     /coverage="83.0"
                     /evalue="4.5e-50"
     Typing          2898..3421
                     /name="ColRNAI_rep_cluster_1987"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="89.434"
                     /coverage="99.0"
                     /evalue="0.0"
     Typing          complement(864..2347)
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="91.717"
                     /coverage="99.0"
                     /evalue="0.0"
ORIGIN
        1 tcaaaatcag caccagctcc aaaggtacgc tcaaaatccc ccattttctg cccccattaa
       61 atttaataaa aaaacagatt taaaatatcc aaaagacact cttatttacc ataacatccc
      121 ttgttcgcac cgccgcagac agcctcagca ccgttctgcg ccatgaaccg caaaagagca
      181 cctcttacca cgtaaaaacg ccgataaatg ccccccgtaa gttcttacgg tatgcatagt
      241 tatgcacgga aatgaactga cactctgttc aatggatttt catgctgtaa gcagtatttt
      301 agtcttctat gccccctcga aacacacctg ttcttgtgta gatcttttcg acccaagatg
      361 gtcttttatc cgagttcatg cagccgtaca ggaacacacc tgttttgggt ttatagctcc
      421 ccccctcctg tggctggtta tctacaaatg aataatcaat cttttcacct ttgactgaag
      481 cacgcccccc aacatgaact aaagaccagt gctcatgcat cacatggctt tcaatcaatc
      541 caaatgaaga aaaaccccat gaatcaaaaa agaccttgag tccgtcagac gcaccaacag
      601 gagtaatgat tgcaaattca acctgctcac cagtaccttc aaggtaagaa ggtttctcga
      661 cgttaattac agatgccccc ttcacctgat aacctttaca ggtaagatat aagtccctcc
      721 cggctgacgg ttttgtatat gtaacgttgt cgttattctc cgcagcagcg actgtaaatg
      781 acatagccaa aaccaccgag actgagcaag cccagaaaca tttcataacg catccctttt
      841 cattgattaa ctacattcca agctcaaaac ctttctgccg ctgcgatcgt tccagctcca
      901 gcgctttctg gtgctgcgcc gcgcgctcct gctcccggtg cgcctcgatg ccattcagcc
      961 ttgcgacaat cggcgcagct gatcgctcaa actctgcacc tgcctgctca agcccgtgac
     1021 gcgctcgctc agcgccgcgt tctcccgttg cataagccca gacatcgtcc gccattccgc
     1081 gaaggcgttc tcccactcgt ccagcctttt cgagtagtcc tgctgtagct gctctaatgc
     1141 gctcagcaac tgtttttcca gttccgtcat gtgctatttc cccgccagta tcatccagct
     1201 cgaatcctct ccgaatcttc ccgcttccgg gttcaccctc acgcagcggc gtctctcctc
     1261 cccgcaggtc gtgagctgga cgccgttgtt cttctctgaa agcatggcct gcgtgctctt
     1321 ctgttcctgg atggtcgtgt agttgtcgag tatctgttgc ccctgccacc acagaatgcc
     1381 cgcgctcgag gcgatcagta gcgcggagac caggactatg gtcagccacg tctggctgat
     1441 catacgcagc atccctttcg tgcgttggct catggctgag gacagcttcc ggtcgtggtc
     1501 gaggatggcg gcgctgattc tcttctcgct ttcgctcagt tccgctctga cagacttctc
     1561 gtgctcgctg aatgcggctt tcagcatctc gccggtagtc tgctgctgcg ctttcgattt
     1621 ctgctctaag tccttcgcca gcgttaaaag actgttcata gatggctccc ttcagtcgga
     1681 tgtttcgccc cccgtcaggg tcggcaatgc tgatgctgct tttcgtggtg cgcaccacct
     1741 caaaacccgc actttccagc gcctcagtga cgtcctgacg ggttttcagc tccccggatg
     1801 aggcaaggga aagtaggccg cgcgtaatcg cctgggcggc ttcctgcttc gcttccggca
     1861 gcgcggacgg tgtaaccagc gcccgccggt tttccggcgc gttcgggtcg tgcagcccca
     1921 gtctgccgtt cactatggtc tgccaggcat caatgcgcgg acggtcggcg cggtcgtaat
     1981 acggctggag acgtctgccg gtcagcagct ccgtgttcgg gatcaggaag ttcagctcca
     2041 gccgcccttt gtcccggtgc tcaacccaca gtacgctgta ctggtcttta tcgagtccgg
     2101 gcatcagaac ccgctcaaag ctcgccatca gcttttcacg ctggccgggc ggcaaatcct
     2161 gttcggcaaa agacagcacg ccggaggtgt atttcttggc gtaaggcgag gcgtcaataa
     2221 gctcccgcac ttcctccggc ttaccctgca gaacgctggc gccgtcgcgc tgccggtctt
     2281 tccccagcag ataatccacc ggaccgccgc caccgccgcg gcctctggga tgaaacttaa
     2341 cgatcatcgt ctgccccctt ttccagcacg gcgtgccgca gccgctcgag tccggcatca
     2401 atggccatca gcacggcgac aacctgcacg cgatcgtgcc cagtaccgcc accggcgtta
     2461 acctgccggg caatctggtt gaggttgtta cccatgccgg caagctgacg aagcagcgcc
     2521 ggcgagatgg atggaagttt gccagcacgc gagggctttt cgtccaggca tatctggcgc
     2581 atccaggccg cgagttgttt accctcacag cgctccagaa gtcggcggtg ctcgtcttct
     2641 gtcacccaca tagtgagcat tttgttgcgc ttttctgcca aaccatcctc cggataacac
     2701 cggttcgggc gggaaatttt ttcctgtccg gagcggtgtt gggcaagccc gcagggcgcg
     2761 gcagtacttt tcagcgggtt tcggggcgca gccctgaacc agtcacgtag cgctagcgga
     2821 gtgtatactg gcttaacatg gtaaatcgga gtggggattc aggaaagtgc ttcatgtggc
     2881 agggagaaaa tgctgctgtg gggcgtaagt gcgaaatgca gatcccggtg aaatgacgcc
     2941 tcctcgctca ctcggtcgct gcgctcctgc cgtgagactg cggcgggcgt tgccagctta
     3001 cgaatggctg gataaagaga ctaagcggaa atcaatcaga aagggcggaa aaaggatgcg
     3061 gcgttgccgt ttttccatag gctccgcccc cctgacaagc atcacgaaat ctgacgctca
     3121 aatcagtggt ggcgaaaccc gacaggacta taaagatccc aggcgtttcc ccctggtagc
     3181 tccctcgtgc gctctcctgt tcctgccttt cggtttaccg gtgtcattcc gctgttatgg
     3241 ccgcgtttat ctaattccac gcctgacact cagttccggg taggcagttc gctccaagct
     3301 ggactgtatg cacgaacccc ccgttcagtc cgaccgctgc gccttatccg gtaactatcg
     3361 acttgagtcc aacccggaaa gacacgacaa aacgccactg gcagcagcca ctggtaactg
     3421 atttagagga gttagtcttg aagttatgcg ccggttaagg ctaaactgaa aggacaagtt
     3481 ttggtgactg tgctcctcca agccagttac ctcggttcaa agagttgctg ctctgagaac
     3541 cttcgaaaaa accgccttgc tgggcggttt tttcgtttac agtgctaaga gattacgatt
     3601 ctccatgaat gatctcaaga agatccgttt aaaaaagcgg gttttatggg gggataaagt
     3661 tcgtctagcc cagtcacttt ggattacagc taggtttcgt aagccatgca agaatgcctg
     3721 taactaacaa aataggccct gcaacgtacg taacatagac tccaacatac gacactgtga
     3781 aacatatgag tacgtatata gacagtgttg tccaaaaaat gactgttgtt ttacagtgaa
     3841 tccactcttt catttttcaa taaaccccac accgtctgga gatcttatta tcgttttgcc
     3901 aggattagct ttcgcccaaa ccaaagcatc ttgaaaagaa gagaattttt tttttgaatt
     3961 tttagttttt cggcgatctt ctcgaaaata ttcgctgtta ttctcatcaa ttatccga
//
