LOCUS       NZ_CP043596             2445 bp    DNA     circular CON 30-MAY-2024
DEFINITION  Klebsiella pneumoniae strain WCHKP040009 plasmid p4_040009, complete
            sequence.
ACCESSION   NZ_CP043596
VERSION     NZ_CP043596.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN08624675
            Assembly: GCF_003036645.2
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 2445)
  AUTHORS   Tang,G., Hu,Y., Feng,Y. and Zong,Z.
  TITLE     The complete genome of Klebsiella pneumoniae strain WCHKP040009
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2445)
  AUTHORS   Tang,G., Hu,Y., Feng,Y. and Zong,Z.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-SEP-2019) Center of Infectious Diseases, West China
            Hospital, Sichuan University, Guoxuexiang 37, Chengdu, Sichuan
            610041, China
REFERENCE   3  (bases 1 to 2445)
  AUTHORS   Liu,L., Lin,J., Tang,G., Yang,B., Feng,Y. and Zong,Z.
  TITLE     Direct Submission
  JOURNAL   Submitted (28-FEB-2018) Center of Infectious Diseases, West China
            Hospital, Sichuan University, Guoxuexiang 37, Chengdu, Sichuan
            610041, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.4.7
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 200.0x
            Sequencing Technology :: Illumina HiSeq; Oxford Nanopore MiniION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003036645.2-RS_2024_05_30
            Annotation Date                   :: 05/30/2024 04:06:04
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,420
            CDSs (total)                      :: 5,296
            Genes (coding)                    :: 5,186
            CDSs (with protein)               :: 5,186
            Genes (RNA)                       :: 124
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 13
            Pseudo Genes (total)              :: 110
            CDSs (without protein)            :: 110
            Pseudo Genes (ambiguous residues) :: 0 of 110
            Pseudo Genes (frameshifted)       :: 52 of 110
            Pseudo Genes (incomplete)         :: 57 of 110
            Pseudo Genes (internal stop)      :: 17 of 110
            Pseudo Genes (multiple problems)  :: 14 of 110
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP043596.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2445
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="WCHKP040009"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="p4_040009"
                     /geo_loc_name="China: Chengdu, Sichuan"
                     /collection_date="2017-03-22"
     gene            join(1517..2445,1..40)
                     /gene="mobV"
                     /locus_tag="C6M58_RS27005"
                     /old_locus_tag="C6M58_27285"
     CDS             join(1517..2445,1..40)
                     /gene="mobV"
                     /locus_tag="C6M58_RS27005"
                     /old_locus_tag="C6M58_27285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000024818.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /GO_process="GO:0006310 - DNA recombination [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobV family relaxase"
                     /protein_id="WP_000024818.1"
                     /translation="MANYAIMRCKKLTGMGSVASALQHCYRERETPNANAERTPENYCS
                     VSKSTDQAMGRVRELLPEKRRKDAVLAVEYVMTASPEWWKEATPRQQAEFFARSEQWLE
                     KKYGKDRVVAAVVHRDEATPHLSAFVVPLTQDGRLSAKEFIGGRSKMREDQSTYAESVK
                     KLGLERGIEGSRATHQTVQHYYESINRGTRSQVSISPEALEPRVLRKGIFTKDVEDQAA
                     IAKRLSHAVNDGFAGTIAMASQSAQNAKRARELQKTMDAQQKRLQSVTEPFKGLSREQM
                     TEILMMAQRFKQQNQEKEKQQRIEREKQRQTRSRGMGGMER"
                     /name="mobV"
     gene            complement(110..340)
                     /locus_tag="C6M58_RS27010"
                     /old_locus_tag="C6M58_27290"
     CDS             complement(110..340)
                     /locus_tag="C6M58_RS27010"
                     /old_locus_tag="C6M58_27290"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_124788667.1"
                     /translation="MMNAEDKLFKNVDRLMLHDSLKKNEVLTVWERTFLSSVYSIYRRT
                     SGNKYSTKGLSPKQKNAAFSILKKHNYHLND"
                     /name="hypothetical protein"
     gene            complement(327..809)
                     /locus_tag="C6M58_RS27015"
                     /old_locus_tag="C6M58_27295"
     CDS             complement(327..809)
                     /locus_tag="C6M58_RS27015"
                     /old_locus_tag="C6M58_27295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001565850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_223375251.1"
                     /translation="MNTKKISRLERHTYMDENGEVKQDSKIETFSIPAEPPYVKLYIAD
                     IAMIHGLSKSQNDVLLQLAMLIGWDGFVSVSKTRFEKTIQPRVHIEYQTFKNIIAALVD
                     KQIFFRAGRGELEANPFLFARGDWPSIYERRKKIELKISYDTNGRTVQTKVMDDEC"
                     /name="hypothetical protein"
     Typing          1509..2380
                     /name="MOBV"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="94.845"
                     /coverage="86.0"
                     /evalue="0.0"
ORIGIN
        1 acagacgcga tcgcgtggca tgggtggtat ggagcgttag ttttgatgcg atgcaggata
       61 gggctaacgc cgcaaagtga cgtcatttgc ggcattcacc acgaaaaaat taatcattca
      121 gatggtaatt atgttttttt aaaatagaaa aagctgcgtt tttctgcttt ggtgacaaac
      181 ccttagttga gtatttatta ccgctagttc tacgatatat gctgtaaaca ctgcttaaaa
      241 aagtacgctc ccaaacagtc agaacctcat tcttttttag tgaatcatgc agcattagcc
      301 tgtctacatt tttaaaaagt ttatcttcag cattcatcat ccattacctt cgtctgcacc
      361 gttcttccat tggtgtcata actgatcttt aactcaattt tctttcttct ttcgtaaatt
      421 gatggccagt ctccccgtgc aaaaagaaag gggttagctt caagttcccc acgccctgcc
      481 cggaagaata tttgtttatc tacaagagcc gcaattatgt ttttaaaggt ctgatattca
      541 atatgaaccc tgggctgtat ggttttttca aatctagttt ttgatacaga cacaaaccca
      601 tcccatccaa tcagcattgc caattgtaaa agcacatcat tttgagattt tgataaacca
      661 tgaatcatcg caatgtctgc aatgtatagc ttgacgtagg gaggttcggc tgggatggaa
      721 aaggtctcga tcttagagtc ttgttttacc tcaccgtttt catccatgta tgtatgccgt
      781 tcaagcctag aaatcttttt cgtattcact ccagccccac gtttcgccat gatttagtac
      841 tcgcatttaa gtactaaaga gacatacagt caagtccttt gtatcaagta cgattagtac
      901 ttgaggtgag tacgattagt ccttgaggtg agtacgatta gtacttgagg tgagtacgat
      961 tggtacttga ggtgagtacg attcttcgct ctagcccttg gtacaagcgg gttcccatat
     1021 ctatatctat atattaaggg ggaaaataag ggctgaaaaa cggcattttt agacactgaa
     1081 aaactgcctt tttttagcaa ggagtgtacg catttctatg tacggggagt ggaaattccg
     1141 cttcctcgct ttggctgttc gttcctcgtc gcgttgctcc tgcggtacgc ctcagccaaa
     1201 gctgcggcga gcggttcctg ctctttcaaa gacgatttca ttgcctgatt tcgtcaaggg
     1261 cgagcgtagc gagtgccatt tacccttgac gacactccgg ataaaacagg cttggcagtg
     1321 gtggggggtg gcgcgaagcg acgccttcca cctgccagac cgccgttgat tttgaccttc
     1381 tggcagcttg ctgcccgaac gattttgcgt agcaaagtct agtgagtttt acactatcat
     1441 cttgatagtg gcccgccgga ggtatcgcaa tgcgctcccc cgcctggctg aatgaatgcc
     1501 ggaatcaggg gggaacatgg cgaactacgc gataatgcgc tgcaaaaagc tgacgggaat
     1561 gggaagcgtg gccagcgcgt tgcagcactg ctaccgagag cgtgagacgc cgaacgctaa
     1621 cgctgaacgg acaccagaaa actactgctc tgtgtccaaa tcaacggatc aggcaatggg
     1681 gcgtgtgcgg gagctgctgc cggaaaaacg ccgtaaagat gcggtactgg ccgttgaata
     1741 cgttatgaca gcaagccctg agtggtggaa agaggccaca ccacggcagc aggcggagtt
     1801 tttcgcccgc tctgagcaat ggctggagaa gaaatacggg aaggatcgtg ttgtggcggc
     1861 ggtggttcac cgggacgagg ccaccccgca cctgtctgcg ttcgtggtgc cattgacgca
     1921 ggatggacgg ctgtccgcga aagagtttat tggcgggcgg tcaaagatgc gtgaagatca
     1981 gagcacctac gctgaatcag taaaaaaact gggtcttgag cgcggcatcg agggaagccg
     2041 cgccacgcat cagacagttc agcactacta cgaatcgata aaccgtggca cccgtagcca
     2101 ggtatcgatc tcgccggagg cgctggagcc gcgtgtattg cggaagggca ttttcaccaa
     2161 agacgtggaa gatcaggcag ccatagccaa acgtctaagc cacgcagtga acgatggctt
     2221 tgcaggaacc atcgctatgg cctctcagag cgcccagaac gcaaaaagag cgcgtgagct
     2281 acagaagact atggatgcgc agcagaaacg cctacagagc gtcacagagc cttttaaggg
     2341 gctttccaga gagcagatga ccgaaatcct gatgatggct cagcggttta agcagcaaaa
     2401 ccaggaaaag gaaaaacagc agcgtattga acgtgaaaaa cagcg
//
