LOCUS       NZ_CP043595             2926 bp    DNA     circular CON 30-MAY-2024
DEFINITION  Klebsiella pneumoniae strain WCHKP040009 plasmid p3_040009, complete
            sequence.
ACCESSION   NZ_CP043595
VERSION     NZ_CP043595.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN08624675
            Assembly: GCF_003036645.2
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 2926)
  AUTHORS   Tang,G., Hu,Y., Feng,Y. and Zong,Z.
  TITLE     The complete genome of Klebsiella pneumoniae strain WCHKP040009
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2926)
  AUTHORS   Tang,G., Hu,Y., Feng,Y. and Zong,Z.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-SEP-2019) Center of Infectious Diseases, West China
            Hospital, Sichuan University, Guoxuexiang 37, Chengdu, Sichuan
            610041, China
REFERENCE   3  (bases 1 to 2926)
  AUTHORS   Liu,L., Lin,J., Tang,G., Yang,B., Feng,Y. and Zong,Z.
  TITLE     Direct Submission
  JOURNAL   Submitted (28-FEB-2018) Center of Infectious Diseases, West China
            Hospital, Sichuan University, Guoxuexiang 37, Chengdu, Sichuan
            610041, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.4.7
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 200.0x
            Sequencing Technology :: Illumina HiSeq; Oxford Nanopore MiniION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003036645.2-RS_2024_05_30
            Annotation Date                   :: 05/30/2024 04:06:04
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,420
            CDSs (total)                      :: 5,296
            Genes (coding)                    :: 5,186
            CDSs (with protein)               :: 5,186
            Genes (RNA)                       :: 124
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 13
            Pseudo Genes (total)              :: 110
            CDSs (without protein)            :: 110
            Pseudo Genes (ambiguous residues) :: 0 of 110
            Pseudo Genes (frameshifted)       :: 52 of 110
            Pseudo Genes (incomplete)         :: 57 of 110
            Pseudo Genes (internal stop)      :: 17 of 110
            Pseudo Genes (multiple problems)  :: 14 of 110
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP043595.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2926
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="WCHKP040009"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="p3_040009"
                     /geo_loc_name="China: Chengdu, Sichuan"
                     /collection_date="2017-03-22"
     gene            join(2525..2926,1..273)
                     /locus_tag="C6M58_RS26990"
                     /old_locus_tag="C6M58_27270"
     CDS             join(2525..2926,1..273)
                     /locus_tag="C6M58_RS26990"
                     /old_locus_tag="C6M58_27270"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="WP_065806389.1"
                     /translation="MIPNWAPMFSWWVHNGLIRKFNWRNDEIGKPSAKVAALMIYIAIT
                     MKCAEEVGIQEVKITYTRLSEMTGISRQLIREGTAILVKLDMIDVTRIGRNNTYKLISN
                     KERSGWCKIPVRAITSEGGHAITPFEDLKLRRKVELHALKIFIYLASVRDNYTEYSLAS
                     YQTISSAVGITEKDIQRALALLSLVGLITRISSEKADDTKKNQPNRYYLAGYKSFVKRS
                     DW"
                     /name="helix-turn-helix domain-containing protein"
     gene            1049..1240
                     /locus_tag="C6M58_RS26995"
                     /old_locus_tag="C6M58_27280"
     CDS             1049..1240
                     /locus_tag="C6M58_RS26995"
                     /old_locus_tag="C6M58_27280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001041614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_001041614.1"
                     /translation="MNKQQKTAVNMAKFIQDQSLLLLDRLNELDLDHEADFCEKLHEDA
                     ERLYRSLSARLNEQQDGA"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            1378..1881
                     /locus_tag="C6M58_RS27000"
     CDS             1378..1881
                     /locus_tag="C6M58_RS27000"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_159051630.1"
                     /translation="MKIAAALGVCHFLVYKTTTPECWRRRLRMILAKKRPFPGKGHARM
                     TLWVQRLHINYKIASAFTPERGCTTELHQKYIKITSLLRQIAGVQQNYIKSTSLLRHFY
                     IIFTSDLTSELFVHPPPLPGPPARAENGFSGCAGNASRPRNKLRIRSPLSGWFVVAFRA
                     FIGF"
                     /name="hypothetical protein"
     Typing          complement(569..1174)
                     /name="rep_cluster_2327"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="88.0"
                     /coverage="99.0"
                     /evalue="0.0"
ORIGIN
        1 aggcgaaaag tagagctgca tgcgctaaaa atattcattt atcttgcttc tgttcgtgat
       61 aactacacag agtattcgtt agcttcttac cagactataa gtagtgctgt tggcattaca
      121 gaaaaagata tccagagagc attagcactc ctctcattgg taggtctgat cactaggatt
      181 tctagtgaaa aagctgatga cactaaaaag aatcagccta atcgctacta tcttgctgga
      241 tataaaagct ttgttaaaag atcggactgg tgaatacgag gtgtgcatag gcagggatgg
      301 gtttaacgct aagctaggaa tgcattcttg acgttactct ttggctaaga gtatcgttac
      361 gcattaacga aaaaaccgcc ctgcaaggcg gtttttcgaa ggttaagtca gttggggaac
      421 tgcttaaccg tggtaacagg gtgaacaaga ccgctgccgc caaatttctc tttaagttta
      481 gccgttgtta ggctcaaaca tcaagactaa agaatctata ggcatcttgt taccccgtta
      541 ccagtggcta ccgccaatgg cgattttgtc gtgtctgctc cgggttggac tcaagtgata
      601 gttaccggaa agggcgtggt agtcgggctg aacggggggt tcttgcatac agcccagctt
      661 ggagcgaact gtctaaacgg agcgggacgt ggtgatttag gtaaggcttc caccacaaca
      721 cgtaaaccgc agggcgggaa caggaaagcg caagagggag ccaccggggg gaaacgcccg
      781 gtatctttaa gtcctgtcgg gtttcgccac cactgatttg agcgtcagat ttcgtgatgc
      841 ttgtcagggg ggcggagcct atggaaaaac gcctctcggg gcgtggcctt ttcgcccttg
      901 tccttagctt tcgttatgct taccgttacg ttatctgctt atcttccctc cgctcgccgc
      961 agactcatga ccgaacggag tgagcgaatg agcgaggaag cggaaaacca tcagaacgta
     1021 cagtaagcac tttcgcgccg gggccttcat gaacaaacaa caaaagactg ccgttaacat
     1081 ggctaaattc atccaggatc agtccctgct tcttctggac aggcttaatg agctggatct
     1141 ggatcatgag gctgatttct gcgagaaact ccatgaggat gcggaacgcc tttaccgaag
     1201 cctgtcagcg cgcctgaatg agcagcagga cggtgcgtaa tgtctccgtt ctgagtatta
     1261 ccggagtaat accggcatcg ccttaatttt cattgtctta gcgcttaaca ttattacccc
     1321 ggtaataccc agaatccctg tattttttat tttttattta tttttcatga agttgcgatg
     1381 aaaatcgcag ctgcgttagg tgtatgtcat tttttagtat ataaaacgac cactcccgag
     1441 tgctggcgcc gcaggttaag gatgattctg gctaaaaagc gtccttttcc gggaaagggt
     1501 catgctcgta tgaccctatg ggttcagcga ctacacataa actacaaaat tgcatctgct
     1561 tttaccccag aacgcgggtg tacaacagaa ttacatcaaa agtacatcaa aattacatca
     1621 cttttacgtc agatcgcggg tgtacaacag aattacatca aaagtacatc acttttacgt
     1681 cacttttaca tcatttttac gtcagatctg acctctgaac tattcgtaca tccgccccct
     1741 cttcctgggc ctcctgcacg tgctgaaaat ggtttttccg gctgtgccgg caacgcctca
     1801 cggccacgca ataaattgcg catccgttca ccgttatcgg ggtggttcgt ggtggctttc
     1861 agggcgttca tcggatttta gccgctaaaa tcccggccag gtatgtccgt gcatagccat
     1921 gcagtcgcgc cagaatcatc aggggcgttt tttctcgata tgggcacaga aaggtgtgtg
     1981 tttcaggccg gaggcctcag aaacgccctg agggcctctg aggcggtgcg ggcaacggat
     2041 gttatggtaa atagctcgac tctgtggctc ttactcgacg ataaaaaaat agtattataa
     2101 aacaacacct tacaaaaaac atatatttat caatggttta tgtttgtttt ttgtgaacta
     2161 atagtttatc aatttgggcg ttttttgact gataaatggt cttttatcgc gctaaatttc
     2221 atcttatgaa ctaattttta gatgctaaaa actaatgatt ctaaaagtaa gtaattgatt
     2281 aaattggttt tattttttat tttcaaaaaa aattaaaacc attgtctcta gatgtaaatc
     2341 ctttggcgag ataaaatttg aaaataactc ctcgtagaag gaccttttat ggaaaattta
     2401 accgttatca gttcatttat tacctcaata gcccctgtca tcagtgggtt cgttccgttc
     2461 ctgttgtcat tagctgtttt ggcaggcttc gttgctattt gcattattgg ctggaggaag
     2521 tgagatgatc cctaattggg ctccgatgtt ctcttggtgg gttcataacg gacttattcg
     2581 gaaatttaat tggcgtaacg atgagatcgg caaaccatca gcaaaggttg ccgctcttat
     2641 gatttacata gcaattacca tgaaatgcgc tgaagaagtt ggcattcagg aagtgaaaat
     2701 aacctatacc cggctatcag aaatgacagg gattagtcgg cagctgataa gagaaggtac
     2761 agctatttta gttaagctgg atatgattga tgttacgcgg attggtcgaa acaacaccta
     2821 taaactgata agcaataaag agcgtagtgg atggtgcaag atacctgtaa gagcaataac
     2881 tagtgaaggt ggccatgcta ttacaccatt tgaagattta aagcta
//
