LOCUS       NZ_CP043594             3473 bp    DNA     circular CON 30-MAY-2024
DEFINITION  Klebsiella pneumoniae strain WCHKP040009 plasmid p2_040009, complete
            sequence.
ACCESSION   NZ_CP043594
VERSION     NZ_CP043594.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN08624675
            Assembly: GCF_003036645.2
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 3473)
  AUTHORS   Tang,G., Hu,Y., Feng,Y. and Zong,Z.
  TITLE     The complete genome of Klebsiella pneumoniae strain WCHKP040009
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3473)
  AUTHORS   Tang,G., Hu,Y., Feng,Y. and Zong,Z.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-SEP-2019) Center of Infectious Diseases, West China
            Hospital, Sichuan University, Guoxuexiang 37, Chengdu, Sichuan
            610041, China
REFERENCE   3  (bases 1 to 3473)
  AUTHORS   Liu,L., Lin,J., Tang,G., Yang,B., Feng,Y. and Zong,Z.
  TITLE     Direct Submission
  JOURNAL   Submitted (28-FEB-2018) Center of Infectious Diseases, West China
            Hospital, Sichuan University, Guoxuexiang 37, Chengdu, Sichuan
            610041, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.4.7
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 200.0x
            Sequencing Technology :: Illumina HiSeq; Oxford Nanopore MiniION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003036645.2-RS_2024_05_30
            Annotation Date                   :: 05/30/2024 04:06:04
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,420
            CDSs (total)                      :: 5,296
            Genes (coding)                    :: 5,186
            CDSs (with protein)               :: 5,186
            Genes (RNA)                       :: 124
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 13
            Pseudo Genes (total)              :: 110
            CDSs (without protein)            :: 110
            Pseudo Genes (ambiguous residues) :: 0 of 110
            Pseudo Genes (frameshifted)       :: 52 of 110
            Pseudo Genes (incomplete)         :: 57 of 110
            Pseudo Genes (internal stop)      :: 17 of 110
            Pseudo Genes (multiple problems)  :: 14 of 110
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP043594.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3473
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="WCHKP040009"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="p2_040009"
                     /geo_loc_name="China: Chengdu, Sichuan"
                     /collection_date="2017-03-22"
     gene            join(3188..3473,1..566)
                     /locus_tag="C6M58_RS26975"
                     /old_locus_tag="C6M58_27245"
     CDS             join(3188..3473,1..566)
                     /locus_tag="C6M58_RS26975"
                     /old_locus_tag="C6M58_27245"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_058799947.1"
                     /translation="MINIQELLAASKAKENNQLVKGVWFLIQWSPDDYSQERFNIGVAF
                     SSERGEKQVKFTKSFKELSNWYGCNLTKQGDMVIKIATHTFIGKSLDKFSSGFFESGIH
                     YVPMGMAQGESIEKIMNVLFKDVVPMAQEKQNIARASYTTTRNIITVVREAISKNSVLK
                     DIMPENPMVETLSGISVKVPIQFRSNAGTIVSADYATSDTVENELLRSFRDIDLILNGN
                     DFDNVNSFLLLPASAKGEAKKISNLIGDYTSSLKSKGVETISAHQPSSLVNKIDGWYKE
                     VA"
                     /name="hypothetical protein"
     gene            1488..1688
                     /locus_tag="C6M58_RS26980"
                     /old_locus_tag="C6M58_27260"
     CDS             1488..1688
                     /locus_tag="C6M58_RS26980"
                     /old_locus_tag="C6M58_27260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000166333.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="antitoxin VbhA family protein"
                     /protein_id="WP_023139298.1"
                     /translation="MARSPDPRQRTEGFRKAEASLRLEGMDPAGTPLYENIKERVISGD
                     ITYEQGRAEILAHYQKRANGH"
                     /name="antitoxin VbhA family protein"
     gene            2352..3191
                     /locus_tag="C6M58_RS26985"
                     /old_locus_tag="C6M58_27265"
     CDS             2352..3191
                     /locus_tag="C6M58_RS26985"
                     /old_locus_tag="C6M58_27265"
                     /inference="COORDINATES: protein motif:HMM:NF042851.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HipA family kinase"
                     /protein_id="WP_023139300.1"
                     /translation="MHIEFKPSSDFNNVKINRAPDGAMAETFSCNINWGENLDSRSYVK
                     CFSARKIMAISNEITGYILAKEAGLPVPEKCALIALPQEIKDEFKSRSGEECFEYGFAM
                     MMADGSTPNAIIKMHSPDEDFANSIFMDALNKWPQTARLIAFDEWVANEDRNLGNFIIT
                     PNNNIVVIDHSNLPCEMLWECDDLINEKAYTNKLVLIYELCKVKGRSYSIPDDAFINKE
                     ASHHALILTSSIAELEAWWDYLLDQPRKAKLKDFLNVRANKARTLPYNQQSGLRMTA"
                     /name="HipA family kinase"
     Typing          complement(742..1291)
                     /name="rep_cluster_2335"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="84.107"
                     /coverage="90.0"
                     /evalue="1.2e-144"
ORIGIN
        1 gtgggttttt cgagagtggg attcattatg tccctatggg tatggctcaa ggtgagtcaa
       61 tagaaaaaat aatgaatgtg ctatttaaag atgtagttcc catggctcaa gaaaagcaaa
      121 atatcgctag ggctagttat acaacaacac gaaatattat aactgttgtt agagaagcta
      181 tatcaaaaaa tagcgtactt aaagacatta tgcctgagaa tccaatggtg gaaacgcttt
      241 caggaatttc ggttaaggtt cctattcaat ttagaagtaa tgcaggaact atagtgtcgg
      301 ctgattacgc tacgagcgat acagtagaaa atgagttgct taggtctttt agagatattg
      361 atcttatctt aaatggcaat gattttgata atgtaaatag ctttctcttg ttgccagcat
      421 ctgccaaagg ggaggctaaa aaaattagca atctaattgg tgattataca tcttctttaa
      481 aatctaaggg cgttgaaact attagtgctc atcagccatc atccctagtg aataaaattg
      541 atggttggta taaagaggtt gcataatctt tatacgcatc ctatttcttg acgctgagga
      601 ttggcgatcg tatcttagag gccaaacgaa aaaaccgcct tggcgggcgg ttttttcgaa
      661 ggttcgcaag agttggcgct cttttgaacc gtggtaactg gctttaacgg agcgcagtaa
      721 ccaaatctgt ccttccagtg tagccggatt tgggctttca cttcaagaac tctgcgttaa
      781 tacaccttcg ctccgtaaac ctgttaccag tggctaccac cagtggcaat tcgttgtgtc
      841 ttcagagatt ggaatcaaga gtacagttgc tttgaaggcg tggtagtcgg actgaacggg
      901 gggttcgtgc atacagtcca gcttggagcg aactgcctac ccggaactga gtgtcaggcg
      961 tggaatgaga caaacgcggc cataacagcg gaatgacacc ggtaaaccga aaggcaggaa
     1021 caggagagcg cacgagggag ctaccagggg gaaacgcctg ggatctttat agtcctgtcg
     1081 ggtttcgcca ccactgattt gagcgtcaga ttctgtgatg cttgtcaggg gggcgaagcc
     1141 tatggaaaaa cggcttcgcc gcggcctttt ctgttcccct ctttctcctt ccgctacctc
     1201 cgaatctgtg ggtaactcca ggtggactgc cggtaccgct cgccgcagcc gaacggccga
     1261 gcgtagcgag tcagtgagcg aggaagcgga agatctgcga tgcctgattg ggctcgtgtc
     1321 gcgccgtacc ctctctttac cgccggatta cacagtttcc tgcaatactt tccttccggt
     1381 ttacacattc gtctgcacgg ataaacaacg gcagagtacg ggcaggatat gtaaagtagg
     1441 cctactttac cgcctgcctt attcgcttac agctcaaagg aacatcgatg gctaggtccc
     1501 ccgatccacg acaacgtact gagggtttcc gcaaagcgga agcgtcgctg aggcttgaag
     1561 gcatggaccc cgccggaacg ccgctgtacg aaaatatcaa ggagcgggtt atttccgggg
     1621 atatcactta cgaacaggga cgggcagaaa ttctggctca ttaccagaag cgtgcgaacg
     1681 gccactgaca cggacaggaa actaggtacc atcgcttcct caaaaaaaca ggcgtggcct
     1741 ctctccggcc aggcttttcc tgtatttgct atctgtttgc tacttgtttg ctatctgttt
     1801 gctacttgtt tgctatcttt ttgctatctg tttgctactt gtttgctacc gctaccctct
     1861 gctgtgaaaa gagtaaggca cgttagcgat gtatacatcg ccgcgccgca agggttcccc
     1921 ttccgaatcc cgttcatcac tgcgtgctga ttatccacgt taaatccgac ctcctgcttg
     1981 gtagtaaatt ctgccatgcc tgacggcctg gccaacgcct cacggtcgca cagtaaactg
     2041 tgcacccgtt caccgttatc gggggagtta tgcgccggaa agcaggcttt catgccagca
     2101 tccaccccaa atcgaccgcc attcacctgc gtgcatagcc atgcagccgc gcagaaatca
     2161 tcaggcgcgt tttttcacga tatggacagg gaaagatgcc ggaaataggc tggagggcgc
     2221 agaaatgccc tgagggcgtc tgagatggtg cacgcaacgg atgttatggt aaatgtgaaa
     2281 aacatttacc ttgataaaaa agctttcaag aaaaataata cagcaaccac aaactttgat
     2341 ggaccagagc tatgcacata gaatttaagc cgtcatctga ctttaataac gttaaaatta
     2401 atagagctcc tgacggcgct atggcagaaa cttttagctg caatattaac tggggcgaga
     2461 atcttgacag cagaagctat gtgaaatgct ttagcgctcg caagattatg gcaatttcta
     2521 acgaaataac tggttatatt ttggcgaagg aggcagggct gcctgtacct gaaaaatgtg
     2581 ctttaatagc attgccacaa gaaataaaag atgaatttaa atccaggtct ggcgaagagt
     2641 gctttgaata cggatttgct atgatgatgg ccgacgggag cacgcctaac gctattataa
     2701 aaatgcacag ccctgatgag gattttgcaa attccatctt tatggatgct ttaaataaat
     2761 ggcctcaaac agctaggctt atagcgtttg atgaatgggt tgccaatgaa gataggaatt
     2821 taggtaactt tattattacg cccaataata atattgtggt catagatcat agtaatctcc
     2881 catgcgaaat gctatgggag tgtgatgact taataaatga aaaggcatac accaataaat
     2941 tggtgttgat ttatgaatta tgtaaggtaa aggggcgttc atactccatt cctgatgatg
     3001 cctttattaa taaagaagct agccaccatg ctttaatatt aacttcttca attgcagagc
     3061 ttgaagcatg gtgggattat cttttagatc agccaagaaa agctaagttg aaagattttt
     3121 tgaacgtgcg tgccaacaaa gcaagaacat tgccttataa ccagcagtct gggctaagga
     3181 tgacagcatg ataaacatac aagagttact tgccgcaagc aaagctaagg aaaacaatca
     3241 gcttgttaaa ggggtttggt tccttattca atggtcacct gatgactata gccaagagcg
     3301 ttttaatatt ggtgttgctt tttcatcaga aagaggcgag aaacaagtta agttcaccaa
     3361 atccttcaag gaattatcta attggtatgg ttgtaactta acaaagcaag gtgatatggt
     3421 tataaaaata gctacccata cttttattgg gaaaagcctt gataaatttt cca
//
