LOCUS       NZ_CP043593             3991 bp    DNA     circular CON 30-MAY-2024
DEFINITION  Klebsiella pneumoniae strain WCHKP040009 plasmid p1_040009, complete
            sequence.
ACCESSION   NZ_CP043593
VERSION     NZ_CP043593.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN08624675
            Assembly: GCF_003036645.2
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 3991)
  AUTHORS   Tang,G., Hu,Y., Feng,Y. and Zong,Z.
  TITLE     The complete genome of Klebsiella pneumoniae strain WCHKP040009
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3991)
  AUTHORS   Tang,G., Hu,Y., Feng,Y. and Zong,Z.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-SEP-2019) Center of Infectious Diseases, West China
            Hospital, Sichuan University, Guoxuexiang 37, Chengdu, Sichuan
            610041, China
REFERENCE   3  (bases 1 to 3991)
  AUTHORS   Liu,L., Lin,J., Tang,G., Yang,B., Feng,Y. and Zong,Z.
  TITLE     Direct Submission
  JOURNAL   Submitted (28-FEB-2018) Center of Infectious Diseases, West China
            Hospital, Sichuan University, Guoxuexiang 37, Chengdu, Sichuan
            610041, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.4.7
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 200.0x
            Sequencing Technology :: Illumina HiSeq; Oxford Nanopore MiniION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003036645.2-RS_2024_05_30
            Annotation Date                   :: 05/30/2024 04:06:04
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,420
            CDSs (total)                      :: 5,296
            Genes (coding)                    :: 5,186
            CDSs (with protein)               :: 5,186
            Genes (RNA)                       :: 124
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 13
            Pseudo Genes (total)              :: 110
            CDSs (without protein)            :: 110
            Pseudo Genes (ambiguous residues) :: 0 of 110
            Pseudo Genes (frameshifted)       :: 52 of 110
            Pseudo Genes (incomplete)         :: 57 of 110
            Pseudo Genes (internal stop)      :: 17 of 110
            Pseudo Genes (multiple problems)  :: 14 of 110
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP043593.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3991
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="WCHKP040009"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="p1_040009"
                     /geo_loc_name="China: Chengdu, Sichuan"
                     /collection_date="2017-03-22"
     gene            306..497
                     /locus_tag="C6M58_RS26950"
                     /old_locus_tag="C6M58_27215"
     CDS             306..497
                     /locus_tag="C6M58_RS26950"
                     /old_locus_tag="C6M58_27215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000166328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_040198051.1"
                     /translation="MTKQQKTALNMAKFIQNQSLLLLDKLNELDLDVEADLCEKLHDDA
                     EHLFRTLSSRLDELQDGN"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            497..919
                     /locus_tag="C6M58_RS26955"
                     /old_locus_tag="C6M58_27220"
     CDS             497..919
                     /locus_tag="C6M58_RS26955"
                     /old_locus_tag="C6M58_27220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005229777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="WP_040214596.1"
                     /translation="MAIVSISEAARLVKVSRPTIYKMINSGKLSYTSVVKHGKAIKVID
                     TSELIRVFGSLDGVIDTVKYDVKSDAESTGINSVGLHDLQHRIALLEAENDGLKGAVKA
                     RDEHIDSLRQAMQLLEHKHEPSSPPHSPWWKFWKKS"
                     /name="helix-turn-helix domain-containing protein"
     gene            1723..1995
                     /locus_tag="C6M58_RS26960"
                     /old_locus_tag="C6M58_27230"
     CDS             1723..1995
                     /locus_tag="C6M58_RS26960"
                     /old_locus_tag="C6M58_27230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004897311.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_019405140.1"
                     /translation="MATDAQVKEINALIKKYPDSCSICHEVYDEDDVTYTVFGYDRKGK
                     IQVTTGCCAGMLTEPVLLGVCGCFDPEERDEIMQNHPMAKQFFTE"
                     /name="hypothetical protein"
     gene            2576..3550
                     /locus_tag="C6M58_RS26965"
                     /old_locus_tag="C6M58_27235"
     CDS             2576..3550
                     /locus_tag="C6M58_RS26965"
                     /old_locus_tag="C6M58_27235"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_114269875.1"
                     /translation="MAFFNLLFVASLICFGGVMGSYSRGCRDSQNKFSKDKDENNKRAS
                     VYRFGIASAFICVPFISSFLHVDYSSIIFPVADGGGTKFIEQILLLISVSGISAYLGYA
                     LLDGLANKVLKEQVDGIDKKQQDLEAEQDEFKDELDRSKELIEQLEMDKKTTKFELGYF
                     KAISAVDKAESMMSIPDEALSVKKKLTEALDAVTESLSLVKREDVAKDDYDKLLVLKAY
                     ILKRLDRIDDALSITDELLMSNEDNPILIYNKACYQYILRRCQADNSDIKDMIRRALTI
                     KVTDPEFIRRQEKIRTKVIGNKDNDLEGLFTDAELEELKVAIK"
                     /name="hypothetical protein"
     gene            complement(3777..3889)
                     /locus_tag="C6M58_RS26970"
                     /old_locus_tag="C6M58_27240"
                     /pseudo=""
     CDS             complement(3777..3889)
                     /locus_tag="C6M58_RS26970"
                     /old_locus_tag="C6M58_27240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005761324.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /name="replication initiation protein"
     Typing          complement(2..258)
                     /name="ColRNAI_rep_cluster_1987"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="82.707"
                     /coverage="92.0"
                     /evalue="8.95e-56"
     Typing          complement(3620..3991)
                     /name="rep_cluster_2374"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="83.376"
                     /coverage="91.0"
                     /evalue="1.92e-91"
ORIGIN
        1 aggaacagga gagcgcacga gggagccacc agggggaaac gcctggtatc tttaagtcct
       61 gtcgggtttc gccaccactg atttgagcgt ccgtttccgc gatgcttgtc aggggggcgg
      121 agcctatgga aaaacagccg ttcggcggcc tttgcttttc tgcctcatat cttggttgcc
      181 tacgttttta tgtacacgct cctgccgctc gccgcagccg aacggctgga gcgtagcgac
      241 tgagtgagcg aggaagcgga aaagagacta gtttgacatt gagcactgac gctctgaggc
      301 ttcttatgac aaaacaacag aaaacagcgc tgaacatggc taaattcatc cagaatcagt
      361 ctctgctcct gctggataag cttaacgagc ttgatctcga tgtcgaggcc gacctttgtg
      421 agaaactcca tgatgatgcg gagcatcttt tccgtacact gtcctcgaga ctggatgaat
      481 tacaggatgg taactgatgg ccatagtgtc tattagtgaa gcggcacggc ttgttaaggt
      541 tagtcgcccc acaatttaca agatgattaa cagtgggaag ttaagttaca cctctgtggt
      601 aaagcacggg aaagctatta aagttattga tacttcagag ctaattagag tgtttggttc
      661 tcttgatggt gtaatcgata ctgtaaaata tgatgtaaaa agtgacgcag aatctacagg
      721 tattaacagc gttggtttac atgatttaca acatagaatc gctttacttg aagctgaaaa
      781 cgatggtctt aaaggggctg ttaaggctcg agatgagcat attgattccc ttcgtcaggc
      841 tatgcagctt ctggagcaca agcacgaacc ttcttcacca ccccattccc cgtggtggaa
      901 attctggaaa aaatcctgat cccgccatgc ttccattttg ctctccggcc attccgggga
      961 gttcctgaac cttcccaaaa atcgtcagat ccctgaacgc tcctcaccac taaaaatacc
     1021 cacacactac gcaaaattaa aattttgcag atagaccttt attttcaatc agttatctat
     1081 tttaaattac gcaattttat tttttgtaag gtgaatccga gtcgtggacg actctatggc
     1141 gaatcgccga tgacttgccc acgattcata tgtgaatcac gccatataat cagtacgtta
     1201 tgatgacttg actctagagt cgacttgccg ggttggtggc tttttgacca tggcgactct
     1261 agagtcaagt cacgagtcga atcgccggtg aatcgtgtgg tgagtcgtcc ggcgacttgc
     1321 cataatgtga ttgctggtct cgacaaaccc gattcctgaa cgtgctgaaa accggttttc
     1381 cggctgcgcc ggcaacgctt cacggccacg caataaattg cgcacccgtt caccgttttc
     1441 agtctggttt ggtgcgggtt ttgagttgcc tggcctgaat tcaggctgaa atccccagac
     1501 agtcagtcaa gtgcataacg attcatgccc gtaaaacgcc ctggagcgat tttgaggcgt
     1561 tttcaggggg taagacgtag gatttaatgg gttacgcccc agaatcgttc tgaggccgtt
     1621 ttagcggtgc gtgtaatggg acgttatggt aaatcaacgg cggatgcctg agtctgtgtt
     1681 agagtcagcg gattgtgata atcagtgact cagggagatg ttttggctac tgacgctcag
     1741 gtaaaagaaa ttaatgcact catcaaaaaa tacccggact catgctccat ctgtcatgaa
     1801 gtctatgatg aggatgatgt gacctacacc gtttttgggt atgaccggaa aggtaaaata
     1861 caggtcacca cgggatgctg tgccggaatg ctgacagagc cggttctgct gggtgtctgt
     1921 gggtgctttg acccggaaga acgtgacgag atcatgcaga atcaccccat ggcaaagcag
     1981 tttttcacag agtgattccg tatctgttga gtctgaagcc cgccttgtgc gggctttttc
     2041 atatctgcgt gaaatgaggc gttatggtaa atgcacgcat tcattctttt gaaaaatcca
     2101 gaatgacgaa tacatggggc atgtttatat gactattgag aggaaggatg ttattgtaaa
     2161 aaaatccttt aaattcaatc atttaattat ggtagccaaa ggggcggggc ttcgcttatt
     2221 ccttaggaat aagcgaagcc ccgccccttt ggctaccagt gcattatact ttttttttca
     2281 cccaatgtca atacatgggt tgattttatc attttaagca tttttgttgt tgtgagtgct
     2341 gggtttatgc cctatattca gcgctaagca agcatgggct tgcaaaggaa caattaatga
     2401 gaggtgctct atgaaaaaaa tcaaacttca cgatgagcgt ccagacttgt aagtgtcaag
     2461 tcagcagaaa aaggcagcca aggctgcctt ttttgttatt ggttagtata tgattgagct
     2521 tatcttaact tacctgaaca aagttttatt gtttgctttg cgcaaggatt ctctcatggc
     2581 tttttttaac ctattgtttg ttgcatctct aatttgtttt ggtggtgtta tggggagcta
     2641 ttccagaggt tgccgagact cccaaaataa attttcaaaa gataaggatg agaataataa
     2701 aagagctagt gtttatagat ttggtatagc atccgcattt atttgtgttc ctttcatatc
     2761 atcatttctt catgttgatt actcaagtat aatatttcct gtggctgatg gtggtggaac
     2821 taagttcata gaacaaatat tgcttcttat ttctgtttcg gggatctctg cgtatcttgg
     2881 gtacgcatta ctggatggtc ttgccaacaa agtattaaaa gagcaagtag acggtataga
     2941 taaaaagcaa caagatttgg aggctgaaca agatgagttt aaagatgagc ttgataggag
     3001 caaggagctg atagaacagc ttgaaatgga taagaaaaca acaaaattcg agctaggata
     3061 ctttaaagcc atttcagctg tggataaagc agaatcaatg atgtccattc cggatgaggc
     3121 tctttctgtt aagaaaaaac taactgaggc attagatgct gtaacggaat cattgtctct
     3181 tgttaaaaga gaggatgtag ctaaggatga ctacgacaag ctcttagtgc ttaaagctta
     3241 tattttgaaa agacttgatc gtattgatga tgctctgtca attacggatg agttacttat
     3301 gagtaatgag gataacccta tacttattta caataaggct tgctatcaat atattttgcg
     3361 tcgttgccaa gctgataact ccgatattaa ggatatgatt cgcagggctc tgactattaa
     3421 agttacagat cctgaattca ttcgcaggca agaaaaaata agaaccaagg tcataggaaa
     3481 taaagataat gatcttgaag ggttgtttac tgacgctgag ctggaggaat taaaggtggc
     3541 tatcaaatag gcagtggcta gctctatgaa ttccaaaaag atccttgacg atcctttgag
     3601 gtgcagcgta ctctacccct caaacgaaaa aaccacccgg caaggtggtt tttcgaaggt
     3661 tcagtaaccg gcaagtttct gaaccgaggt aactggctta gaggagcgca gtcaccaaaa
     3721 cagttcgttt agtttagcct taactggcgc ataacttcaa gactaactcc tctaaatcaa
     3781 ttaccagtgg ctgctgccaa tggcgataag tcgtgtcttt ccgggttgga ctcaagagat
     3841 agttactgga acgggcgcag cagtcggact gaacgggggg ttcgtgcata cagtccagct
     3901 tggagcgaac tgccttcccg gagccgagta tcaggcatgg aatgagaaaa cgcggccata
     3961 acagcggaat gacaccggta aaccgaaagg c
//
