LOCUS       NZ_CP043510             4657 bp    DNA     circular CON 24-MAY-2024
DEFINITION  Salmonella enterica subsp. enterica serovar Rissen strain GJ0703-2
            plasmid unnamed, complete sequence.
ACCESSION   NZ_CP043510
VERSION     NZ_CP043510.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN12657726
            Assembly: GCF_011057955.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. enterica serovar Rissen
  ORGANISM  Salmonella enterica subsp. enterica serovar Rissen
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 4657)
  AUTHORS   Zhou,A.
  TITLE     Whole-Genome comparative and Pathogenicity Analysis of Salmonella
            enterica subsp. enterica serovar Rissen
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4657)
  AUTHORS   Zhou,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-AUG-2019) Department of Laboratory Medicine, Shanghai
            East Hospital, Yuntai Road 1800, Shanghai 200123, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: SOAPdenovo v. MAY-2019
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 257.0x
            Sequencing Technology :: PacBio RS II platform and Illumina HiSeq
            4000 platform
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_011057955.1-RS_2024_05_24
            Annotation Date                   :: 05/24/2024 02:01:41
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,798
            CDSs (total)                      :: 4,678
            Genes (coding)                    :: 4,554
            CDSs (with protein)               :: 4,554
            Genes (RNA)                       :: 120
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 12
            Pseudo Genes (total)              :: 124
            CDSs (without protein)            :: 124
            Pseudo Genes (ambiguous residues) :: 0 of 124
            Pseudo Genes (frameshifted)       :: 53 of 124
            Pseudo Genes (incomplete)         :: 92 of 124
            Pseudo Genes (internal stop)      :: 26 of 124
            Pseudo Genes (multiple problems)  :: 40 of 124
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP043510.1.
            Bacteria and source DNA available from Shanghai East Hospital.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4657
                     /organism="Salmonella enterica subsp. enterica serovar
                     Rissen"
                     /mol_type="genomic DNA"
                     /strain="GJ0703-2"
                     /serovar="Rissen"
                     /isolation_source="stool"
                     /sub_species="enterica"
                     /db_xref="taxon:399587"
                     /plasmid="unnamed"
                     /geo_loc_name="China"
                     /lat_lon="30.40 N 120.52 E"
                     /collection_date="2015-07-03"
                     /collected_by="Shanghai East Hospital"
     gene            complement(join(4626..4657,1..448))
                     /locus_tag="FZX11_RS23825"
                     /old_locus_tag="FZX11_24205"
     CDS             complement(join(4626..4657,1..448))
                     /locus_tag="FZX11_RS23825"
                     /old_locus_tag="FZX11_24205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001050742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_023138585.1"
                     /translation="MNLLLPRDIVEAVLNDKKTKNARVAKCDGSEFFLELPSMNADFPA
                     GKIILKLGDSGFYNKRTKSLEGAYGLRHIWDKHRVEIGATSAEDIVIFLESILLAGAEV
                     LIDPKKGQNKAIVVESGTGMMILELKKPNGEDPYYSIITAYDRKSHPGTKLHTII"
                     /name="hypothetical protein"
     gene            708..1475
                     /locus_tag="FZX11_RS23830"
                     /old_locus_tag="FZX11_24210"
     CDS             708..1475
                     /locus_tag="FZX11_RS23830"
                     /old_locus_tag="FZX11_24210"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_196042596.1"
                     /translation="MQPRELLMLSMYILVQAPVLTGLSKNQTESLTTNNKRGRRTAFYR
                     IKKHLQHDFYRIDSIKNEIHSPIKGFYMKDMKAVVVFTGKDLNIMRTEGGSGYWHARTD
                     RLNDADYLIAVRNRRETWAVKDLEHGTAFLIAKITGCFKSPDYDDRNVITFDEYAEIHT
                     PKAWKMLTDGQRYPVAYLSAQEAFLRIGVTPEQLEWKKFHPSSPSVPNTVIPGLAEEKT
                     EKLSLNEAIERAKKDISNATGIDSSAITISIKI"
                     /name="hypothetical protein"
     gene            complement(1674..1889)
                     /locus_tag="FZX11_RS23835"
                     /old_locus_tag="FZX11_24215"
     CDS             complement(1674..1889)
                     /locus_tag="FZX11_RS23835"
                     /old_locus_tag="FZX11_24215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000137421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="WP_000137421.1"
                     /translation="MTELEKQLLSALEQLQQDYSKRLDEWENAFAEWRTMSGLMQRENA
                     ALSERVTGLSRQVQSLSEQLRRLSQG"
                     /name="MbeD family mobilization/exclusion protein"
     gene            complement(1893..2378)
                     /locus_tag="FZX11_RS23840"
                     /old_locus_tag="FZX11_24220"
     CDS             complement(1893..2378)
                     /locus_tag="FZX11_RS23840"
                     /old_locus_tag="FZX11_24220"
                     /inference="COORDINATES: protein motif:HMM:NF016710.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeB family mobilization protein"
                     /protein_id="WP_001086854.1"
                     /translation="MNSLLTLAKDLEQKSKAQQQSTGEMLKAAFSEHEKSVRAELSESE
                     KRISAAILDHDRKLSAAMSQRTKGMLRMVSQTWLTIVLVSTLLTASGASILWWQGQQIL
                     DNYTTIREQKRTQAMLSERNSGVQLSTCGEQRRRCVRVNPEAGRFGEDSSWMILAGK"
                     /name="MbeB family mobilization protein"
     gene            complement(<2413..3117)
                     /locus_tag="FZX11_RS24330"
                     /old_locus_tag="FZX11_24225"
                     /pseudo=""
     CDS             complement(<2413..3117)
                     /locus_tag="FZX11_RS24330"
                     /old_locus_tag="FZX11_24225"
                     /inference="COORDINATES: protein motif:HMM:NF015397.4"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            complement(3056..3379)
                     /locus_tag="FZX11_RS23850"
                     /old_locus_tag="FZX11_24230"
     CDS             complement(3056..3379)
                     /locus_tag="FZX11_RS23850"
                     /old_locus_tag="FZX11_24230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000957083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="WP_001347450.1"
                     /translation="MLTMWVTEDEHRRLLERCDGKQLAAWMRQTCLDEKPARAGKLPSL
                     SPALLRQLAGMGNNLNQIARQVNAGGGSGHDRVQVVAALMAIDAGLERLRHAVLEKGAD
                     DDR"
                     /name="MobC family plasmid mobilization relaxosome protein"
     Typing          complement(3481..3667)
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="85.263"
                     /coverage="87.0"
                     /evalue="2.7100000000000003e-47"
     Typing          3647..4126
                     /name="ColRNAI_rep_cluster_1987"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="89.938"
                     /coverage="93.0"
                     /evalue="3.51e-174"
     Typing          complement(1571..3066)
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="91.583"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 ggctcttcct atcataagca gtaatgatgc tgtagtacgg gtcttcgccg tttggttttt
       61 tcaattctag tatcatcatc cccgttcctg actctacaac aatcgctttg ttttggcctt
      121 ttttaggatc tatgagcact tctgccccag ctaataatat gctctccaaa aagatgacaa
      181 tatcctcagc ggaagtagct cctatctcga cacgatgctt gtcccatata tgcctaaggc
      241 cataggctcc ctcgagactt tttgtccttt tgttgtaaaa accggaatct cctagcttga
      301 ggatgatttt ccctgcggga aagtctgcat tcatgcttgg cagttctaga aaaaattcac
      361 ttccatcaca cttagccact cgtgcatttt ttgttttctt atcattaaga acagcttcaa
      421 ctatatcgcg tggaagtaac aagttcacaa actacacctc tatagccttc actattatgt
      481 ttaggcgtta aatccctttt tgaagggctg attctaacac tgacgtaatg agcaatttcc
      541 agtaaatctt gatagaaaaa accagttgta tttaccataa cattccttgc ccgcaccgct
      601 ccggacgggt tcagcgtgaa agcggcgtta gcccggtaaa atcggcagta aactccccgc
      661 taaaccgcgc attctgcgcc tgataaattt cacgtggctg catagccatg cagccacgtg
      721 aattgctcat gctttcaatg tatatcctcg tccaagcccc tgttttaacc ggtttatcaa
      781 aaaaccaaac agaaagcctt accactaaca ataaaagagg taggaggact gcattttatc
      841 gcataaaaaa acatttacaa cacgattttt atcgtataga ttccataaaa aatgaaattc
      901 actcacctat taagggtttc tatatgaaag atatgaaagc tgttgtggtt tttaccggga
      961 aggatttgaa cataatgaga actgaggggg ggtcaggcta ctggcatgcc agaacagaca
     1021 ggctcaacga tgccgattac ctcatagcag taagaaacag aagggaaacg tgggcagtaa
     1081 aagacctgga acacggcaca gcattcctga tcgccaaaat taccgggtgt tttaaaagcc
     1141 ctgattacga cgacaggaac gtcataacct ttgatgaata cgcagaaatt cacacgccaa
     1201 aagcatggaa aatgctaacc gatggtcagc gctatccggt tgcttacctg agcgcacagg
     1261 aagctttttt acgtattggg gtaacaccgg aacaactgga atggaagaaa ttccatcctt
     1321 catccccatc ggttcctaat acagtgattc ctggtctggc tgaagagaaa acagaaaaac
     1381 tctcccttaa cgaggcaatt gaaagagcca aaaaggatat tagcaacgca acagggattg
     1441 atagctcagc cataacaata agcatcaaga tctgatgaag cgtgaacaac aagatagcag
     1501 cctcatgttc tagaactgaa cctgtacgcc agaaacagca agcccatgct tttccggcgc
     1561 acagattcaa agtgacggac cgttgtacgt tcgctgtcgc tgagatcgtt ccagctccag
     1621 cgctttctga tgctgcgccg cccgttcctg ctcacgatgt gcctctatca cgttcagcct
     1681 tgtgacaacc ggcgcagctg ctcgctcaaa ctctgcacct gcctgctcaa gcccgtgacg
     1741 cgctcgctca gcgccgcgtt ctcccgttgc ataagaccag acatcgtccg ccattccgcg
     1801 aaggcgttct cccactcgtc cagccttttc gagtagtcct gctgtagctg ctctaatgcg
     1861 ctcagcaact gtttttccag ctccgtcatg tgctatttcc ccgccagtat catccagctc
     1921 gaatcctctc cgaaccgtcc cgcttccggg ttcaccctca cgcagcggcg tctctgctct
     1981 ccgcaggtcg agagctgcac accgctgttc ctctcggaca gcatggcctg cgtgcgcttc
     2041 tgctcccgga tggtcgtgta attgtcgagt atctgctgcc cctgccacca cagaatactt
     2101 gcgcccgatg ctgtcagcag tgtagacacc aagacgatgg tcagccacgt ctggctgacc
     2161 atccgcagca tacctttcgt gcgctggctc atggcagcgg acagcttcct gtcgtggtcg
     2221 aggatggcgg cgctgattct cttctcgctt tcgctcagtt ccgctctgac agacttctcg
     2281 tgctcgctga atgcggcttt cagcatctcg ccggtactct gctgctgcgc tttcgatttc
     2341 tgctctaagt ccttcgccag cgttaaaaga ctgttcatag atggctccct tcagtcggat
     2401 gtttcgcccc ccgtccgggt cggcaatgct gatgctgctt tttgtggtgc gtaccacctc
     2461 aaaacctgcg ctttccagcg cctcagtgac gtcctggcgg gttttcagct ccccggacga
     2521 ggctaaggcc agtaaacccc gtgtaattgc ctgagcggct tcctgcttcg tttccggcag
     2581 cgcggacggc gtgaccagca cccgccggtt ttcaggcgcg ttcgggtcat gcagccccag
     2641 cctgccgttc acgatggtct gccaggcatc aatgcgcgga cggtcggcgc ggtcgtaata
     2701 cggctggaga cgcttgccgg tcagcagctc cgtgttcggg atcaggaagt tcagctccag
     2761 ccgcccctta tcctggtgct caacccacag cacgctgtac tggtctttat cgagtccggg
     2821 catcagaacc cgttcaaagc tcgccatcag cttttcgcgc tgcccgggcg gtaaatcctt
     2881 ttcggcaaag gacaagacgc cggatgtgta cttttttgcg tagggcgagg cgtcgataag
     2941 ctccctgact tcttccggct tcccctgcag aacggtggcg ccgtcgcgct gtcggtcttt
     3001 ccccagcaga taatccaccg gaccggcgcc accgccgcgc cctcgcgggt gaaacttaac
     3061 gatcatcgtc tgcacccttt tccagcacgg catgccgcag ccgctcgagt ccggcatcta
     3121 tggccatcag cgcggcgacg acctgcacgc ggtcgtgccc gctgccacca ccggcgttaa
     3181 cctgccgggc aatctggttg aggttgttcc ccatgccggc aagctgacga agcagcgccg
     3241 gcgagagcga gggaagcttg ccggcgcggg cgggtttctc gtccaggcac gtctggcgca
     3301 tccaggctgc aagctgttta ccgtcgcagc gctccagcag acggcggtgc tcatcttcgg
     3361 tcacccacat cgtgagcatt ttgctgcgtt tgtctgccaa tccggcctcc tgataacgcc
     3421 gagacgggcg ggaaatcttt tcccggtcgg cgcggtgttg gacaagccgc aggcgcgtca
     3481 gtggttttag cgggtttcgg ggcgcagccc tgaaccagtc acgtagcgct agcggagtgt
     3541 atactggctt agtatggtaa atcgaagtgg aaattcaggg aagtgcttca tgtggcaggt
     3601 aaaaaattca gctgtggggc gtaagtgcga aatgctggag acgatgaaat gacgcctcct
     3661 cgctcactcg gtcgctacgc tcctgccgtg agactgcggc gggcgttacc tgctcaagaa
     3721 tgacgagata aatagcgctc aaatcaagaa ggaaggggaa aaggatccgg cgttgccgtt
     3781 tttccatagg ctccgccccc ctgacaagca tcacgaaatc tgacgctcaa atcagtggtg
     3841 gcgaaacccg acaggactat aaagatacca ggcgtttccc cctggtggct ccctcgtgcg
     3901 ctctcctgtt cctgcctttc ggtttaccgg tgtcattccg ctgttatggc cgcgtttatc
     3961 tcattccacg cctgacactc agttccgggt aggcagttcg ctccaagctg gactgtatgc
     4021 acgaaccccc cgttcagtcc gaccgctgcg ccttatccgg taactatcgt cttgagtcca
     4081 acccgaaaag acacgactta acgccactgg cagcggccac tggtaagcag gatgtgcgag
     4141 agatgtatcg agagttcttg aagtggaggc cttagtgagg ctacactgga aggacagtat
     4201 ttggtgacat gtctcgcaca agactgttac cacggttcag aaacttgccg gtttactgaa
     4261 ccttcgaaaa accaccttgc cgggtggttt tttcgtttac agggagagag attacgacga
     4321 gagtaaaacg atcacaagga gatctgaccg tttaccagtg atttggcttc gttttggttt
     4381 ccactgaaca ccaaaatagc actttttgca aaaagatgag cagtgataga gttgtattct
     4441 gtatgtgtag aagggcttgg tatgtaacct gaactctgga ttggttacat atttgtaggc
     4501 tacttgtcgg aaaccagatt tcgacaatgc gttgttaagg tcaaagacct gtcccgaacc
     4561 gaaatgctaa gggaatgcca cgaacaacac tattacgaag aagtcggcta tttagccggc
     4621 ttttttcata ttatggtatg aagttttgta cctggat
//
