LOCUS       NZ_CP043385             2496 bp    DNA     circular CON 04-APR-2024
DEFINITION  Enterobacter hormaechei subsp. xiangfangensis strain WCHEX045001
            plasmid p2_045001, complete sequence.
ACCESSION   NZ_CP043385
VERSION     NZ_CP043385.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10525000
            Assembly: GCF_003964795.2
KEYWORDS    RefSeq.
SOURCE      Enterobacter hormaechei subsp. xiangfangensis (Enterobacter
            xiangfangensis)
  ORGANISM  Enterobacter hormaechei subsp. xiangfangensis
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Enterobacter; Enterobacter cloacae complex.
REFERENCE   1  (bases 1 to 2496)
  AUTHORS   Wu,W., Long,H., Feng,Y. and Zong,Z.
  TITLE     The complete genome of Enterobacter xiangfangensis strain
            WCHEX045001
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2496)
  AUTHORS   Wu,W., Long,H., Feng,Y. and Zong,Z.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-AUG-2019) Center of Infectious Diseases, West China
            Hospital, Sichuan University, Guoxuexiang 37, Chengdu, Sichuan
            610041, China
REFERENCE   3  (bases 1 to 2496)
  AUTHORS   Wei,L., Wu,W., Lin,J., Zhang,X., Feng,Y. and Zong,Z.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2018) Center of Infectious Diseases, West China
            Hospital, Sichuan University, Guoxuexiang 37, Chengdu, Sichuan
            610041, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.4.7
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 200.0x
            Sequencing Technology :: Illumina HiSeq; Oxford Nanopore MiniION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003964795.2-RS_2024_04_04
            Annotation Date                   :: 04/04/2024 04:33:52
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,732
            CDSs (total)                      :: 4,615
            Genes (coding)                    :: 4,520
            CDSs (with protein)               :: 4,520
            Genes (RNA)                       :: 117
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 95
            CDSs (without protein)            :: 95
            Pseudo Genes (ambiguous residues) :: 0 of 95
            Pseudo Genes (frameshifted)       :: 31 of 95
            Pseudo Genes (incomplete)         :: 62 of 95
            Pseudo Genes (internal stop)      :: 18 of 95
            Pseudo Genes (multiple problems)  :: 14 of 95
            Pseudo Genes (short protein)      :: 1 of 95
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP043385.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2496
                     /organism="Enterobacter hormaechei subsp. xiangfangensis"
                     /mol_type="genomic DNA"
                     /strain="WCHEX045001"
                     /isolation_source="blood"
                     /host="Homo sapiens"
                     /sub_species="xiangfangensis"
                     /db_xref="taxon:1296536"
                     /plasmid="p2_045001"
                     /geo_loc_name="China: Chengdu, Sichuan"
                     /collection_date="2018-01"
     gene            join(2403..2496,1..134)
                     /locus_tag="EKN98_RS23835"
                     /old_locus_tag="EKN98_023835"
     CDS             join(2403..2496,1..134)
                     /locus_tag="EKN98_RS23835"
                     /old_locus_tag="EKN98_023835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010615788.1"
                     /GO_component="GO:0005886 - plasma membrane [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YgdI/YgdR family lipoprotein"
                     /protein_id="WP_021243043.1"
                     /translation="MKKIFVSVFAAAVALSALTGCTRTSYAIHTNDGRTIVSDGKPKES
                     DSGLLGYTDANGVKQQINKTDVKEVSEIPH"
                     /name="YgdI/YgdR family lipoprotein"
     gene            500..685
                     /locus_tag="EKN98_RS23840"
                     /old_locus_tag="EKN98_023840"
     CDS             500..685
                     /locus_tag="EKN98_RS23840"
                     /old_locus_tag="EKN98_023840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000165998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_032673404.1"
                     /translation="MTRQESAALNMAKFIRSQTLLLLERLEQMDLDEAAGCCEHLHDQA
                     EALYAMLNAQIGEKDA"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            complement(983..1201)
                     /locus_tag="EKN98_RS23845"
                     /old_locus_tag="EKN98_023845"
     CDS             complement(983..1201)
                     /locus_tag="EKN98_RS23845"
                     /old_locus_tag="EKN98_023845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001046776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_182407767.1"
                     /translation="MFGFSSGALMTFNDDERHLLVSVVSGWLRRAEGDAGAMMLDAYRQ
                     ILSETEPAARAVMLEFLESVRIHYVSS"
                     /name="hypothetical protein"
     Typing          complement(733..820)
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="94.382"
                     /coverage="100.0"
                     /evalue="1.5000000000000001e-30"
     Typing          complement(1309..1481)
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="89.714"
                     /coverage="100.0"
                     /evalue="9.61e-56"
     Typing          1406..1988
                     /name="rep_cluster_2335"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="87.331"
                     /coverage="97.0"
                     /evalue="0.0"
ORIGIN
        1 acggtcgcac tattgtcagc gacggcaaac ctaaagaatc agactcaggc ctgcttggct
       61 atacagacgc gaatggtgtc aaacagcaga tcaataaaac cgacgttaaa gaagtctccg
      121 aaattccgca ctgagcatat tctccgaaaa aggccgctaa tgtggccttt ttctttacct
      181 gtggttctcc gccaaaatcc cagcaaattg catcaccaaa gctaaaagct ttcagggttg
      241 tctaaaaagc acaagacata agaggaagtg cggtatttta taatcaagcc cccaagaatt
      301 taccataaca tccgttgccc gcaccgcctc agacgcgctc agcgcgtttc tgacggaacc
      361 atgacaaaaa ccacaacaaa ccaccccgga acccgtcaga aacgcgcctg ttaaatttta
      421 acggcatgca tgactatgca ccagaatgac ggcatgctct tttcacgcaa aaatcatcac
      481 cagacgggga aaatcaccag tgaccagaca ggaatccgcc gccctcaaca tggccaaatt
      541 tatccgctca cagacactcc tcctcctcga acggctcgaa cagatggatc tggatgaggc
      601 agccggctgc tgtgagcatc tgcacgatca ggctgaagcg ctttacgcca tgctgaacgc
      661 acagataggc gagaaagatg cgtgaaaatc ggtgaacggg tgcgcaattc agtgcgcggc
      721 cgtgaggcga tggcggggtg tcggggcgca gccctgaacg gggtatttgt gatgccgccg
      781 cgtgcgcggt attacaaatg cacatcctgt ccgggagcgg acaccgggaa acagcaaaaa
      841 aaaccgggcg acacgcccgg aactcaatca agttagatta ctctcaatct tccataacag
      901 catcatggaa cgacgaccac cgtccgtgac ggccgcctgg attgagtatg gacaaaaatt
      961 caggaaatgc ttcaggaaat gctcaggacg aaacgtaatg aatgcgaact gattcaagaa
     1021 attcgagcat gaccgccctt gcggccggtt cggtttcaga caaaatctgc cggtatgcat
     1081 ccagcatcat ggctccggca tccccttcgg cacgccggag ccagcccgaa acaacggaca
     1141 caagcaggtg tcgctcatca tcattaaaag tcatcagggc tccggaggaa aaaccaaaca
     1201 tggcttacct cctgttaacg gcaacgcaga agaaaggttt acagggtagc gggcaggaat
     1261 gaaaaaaatc gcagtcagac cagaacggct gcttaaccgg tacaggcggg ttccgggcgc
     1321 agcgccggac cagtcacgca gcgctagcgg agtgtatact ggcttaatat gttggcacgg
     1381 atgcggatgt cagttaagtg cttcatgtgg caggagaaaa aggcggcatc ggtgcgtcag
     1441 cagaatattt gatacaggag atattccgct tcctcgctca ctgactcgct gcgctcggtc
     1501 gttcggctgc ggcgagcggt acgggcttac gtacagagca gaaatttcct ggagaatgcc
     1561 aggaaggttc ttagcgaaaa aggcataagg ccacggcaaa gccgtttttc cataggctcc
     1621 gcccccctga caagcatcac gaaatctgac gctcaaatca gtggtggcga aacccgatgc
     1681 ggcttaaaga taccaggcgt ttccccctgg tggctccctc gtgctccccc gcattcctgc
     1741 ctttcggttt accggtgtca ctccgctgtt atggccgcgg tttctcattc cacgcctgac
     1801 actcagttcc gggaaggcag ttcgctccag gatggactgt atgcacgaac cccccgttca
     1861 gtccgaccgc tgcgccttat ccggtaacta tcaacttgag tccaacccgg aaagacacga
     1921 ctaatcgcca ttggcaacgg ccattggtaa acaggatgtg cgagagatgt atcaagagtt
     1981 cttgaagtgg cggccttagt gaggctacac tgaaaggaca aatttggtga catgtctcgc
     2041 acaagactgt taccacggtt aggggatctg ccaggattac ctaaccttcg aaaaaccacc
     2101 tgccagggtg gttttttcgt ttacagggca agagattacg cgcgaaaaaa aaggatctca
     2161 agaagatcct ttataaatta gacatccaac ctcacaaaga ggaatactta aatcatcttg
     2221 gtatatgtat ctgctggatt acatctcata taagcctcct ccccgcttga caccacactt
     2281 tgaccatagc acctcgcgcc taactcgata tacagcccac catcaagcct cttttcacat
     2341 aaaaaataac ctatagttag atggttagtg accaaaactg atatggataa aaggagctgg
     2401 ctttgaaaaa gatttttgtt tcagtgttcg cagcggcagt tgcgctttca gccctcaccg
     2461 gctgcacgcg cacaagctat gccatacaca ccaatg
//
