LOCUS       NZ_CP043341             2088 bp    DNA     circular CON 24-MAY-2024
DEFINITION  Escherichia coli strain WCHEC115106 plasmid p6_115106, complete
            sequence.
ACCESSION   NZ_CP043341
VERSION     NZ_CP043341.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN12623214
            Assembly: GCF_022559065.1
KEYWORDS    RefSeq.
SOURCE      Escherichia coli
  ORGANISM  Escherichia coli
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Escherichia.
REFERENCE   1  (bases 1 to 2088)
  AUTHORS   Hu,Y., Long,H., Feng,Y. and Zong,Z.
  TITLE     The complete genome of Escherichia coli strain WCHEC115106
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2088)
  AUTHORS   Hu,Y., Long,H., Feng,Y. and Zong,Z.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-AUG-2019) Center of Infectious Diseases, West China
            Hospital, Sichuan University, Guoxuexiang 37, Chengdu, Sichuan
            610041, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.4.7
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 200.0x
            Sequencing Technology :: Illumina HiSeq; Oxford Nanopore MiniION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022559065.1-RS_2024_05_24
            Annotation Date                   :: 05/24/2024 04:21:23
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,139
            CDSs (total)                      :: 5,017
            Genes (coding)                    :: 4,754
            CDSs (with protein)               :: 4,754
            Genes (RNA)                       :: 122
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 91
            ncRNAs                            :: 9
            Pseudo Genes (total)              :: 263
            CDSs (without protein)            :: 263
            Pseudo Genes (ambiguous residues) :: 0 of 263
            Pseudo Genes (frameshifted)       :: 87 of 263
            Pseudo Genes (incomplete)         :: 171 of 263
            Pseudo Genes (internal stop)      :: 54 of 263
            Pseudo Genes (multiple problems)  :: 41 of 263
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP043341.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2088
                     /organism="Escherichia coli"
                     /mol_type="genomic DNA"
                     /strain="WCHEC115106"
                     /host="Homo sapiens"
                     /db_xref="taxon:562"
                     /plasmid="p6_115106"
                     /geo_loc_name="China: Chengdu, Sichuan"
                     /collection_date="2017"
     gene            810..1775
                     /locus_tag="FZC46_RS25570"
                     /old_locus_tag="FZC46_25880"
     CDS             810..1775
                     /locus_tag="FZC46_RS25570"
                     /old_locus_tag="FZC46_25880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012421200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_039064478.1"
                     /translation="MSEDKFLSDYSPRDAVWDTQRTLTDSVGGIYQTAAEFERYALRMA
                     SCSGLLRFGWSTIMETGETRLRLRSAQFCRVRHCPVCQWRRTLMWQARFYQALPKIVVD
                     YPSSRWLFLTLTVRNCEIGELGTVLTAMNAAFKRMEKRKELSPVQGWIRATEVTRGKDG
                     SAHPHFHCLLMVQPSWFKGKNYVKHERWVELWRDCLRVNYEPNIDIRAVKTKTGEVVAN
                     VAEQLQSAVAETLKYSVKPEDMANDPEWFLELTRQLHKRRFISTGGALKNVLQLDRETN
                     EDLAIADDVGDGTDDGKRTAFVWDSGKRRYKRAPEKDKSD"
                     /name="protein rep"
     gene            1779..2045
                     /locus_tag="FZC46_RS25575"
                     /old_locus_tag="FZC46_25885"
     CDS             1779..2045
                     /locus_tag="FZC46_RS25575"
                     /old_locus_tag="FZC46_25885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001024536.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_001024536.1"
                     /translation="MNINIEYLNGNKTIGLFFLRSEAVIPDRFKNLILLIDGLSFGTFG
                     FHPHEGFEDELILYIQKTNERVKTLFVKIDLNGIKFGFLRTHS"
                     /name="hypothetical protein"
     Typing          1204..1435
                     /name="Col(BS512)"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="2.05e-118"
ORIGIN
        1 attgcatgca atctctagtg ctctgtctat cctgcattat cctcagcatt atcctcagcc
       61 ttgccaactc gacaccaatg caggatagac aatccgatgt caaatgttaa cactctgcga
      121 gtggtacatt ttccccggat tatcgtcctg agcctgccgc tggctctctt tctaccgcct
      181 cgctttgctc gttgctcaac gcctcacaga cacggattaa aatccgcatc cgttcaccgt
      241 tttttaaagt ccgttaaaag catgatgcca tctccgagag ttaatctcgt caaatgctaa
      301 atcgtggggg tcccctttgg ggttccgatt tagtgattga cgacaccacc gattaaaaaa
      361 cttatgcggg gtggatggtt tcacgaagtg aggccatcca cctgtaagac agggttttgt
      421 ttttatcccc tgttttggtg atcgggtgtg tggaaaaggt tggggtaagc cgttcggggt
      481 gcttgttttg gggggttaaa attgtggtta ttttttgcgc aattctcgcg cgtgatcctt
      541 gtatttatac ttaagggata aatggcgggt atgaaatagt ggtttagccc agtaatgacg
      601 aggctttgag tgggttttga caggtcaaag aaaatggagc agaattgagg cgtttttaat
      661 cggcgttggg gagtgcgtca acactcccca acatttcgaa tgtgtcacct cagcggcaaa
      721 ctctggtgac atgtactggc tcgcaatgca caggtacgtg atgaatatac cacatcaaat
      781 cacagcctgc ccagatcgga gcaggcttaa tgtcagaaga taaattcctt tcggactaca
      841 gcccccgtga tgcagtttgg gatacccagc gcacgcttac cgattctgtc gggggtatct
      901 accagactgc tgctgaattc gagcgctatg cactccgtat ggcctcctgt agcggtttgt
      961 tacgttttgg ttggtctacc atcatggaaa ccggagaaac gcgcctacgg cttcgtagtg
     1021 cgcaattttg ccgtgtccgt cattgccctg tctgccagtg gagaagaacc ctcatgtggc
     1081 aagcccgttt ttatcaggct ctaccgaaaa tcgttgtgga ttacccgtct tcccgatggt
     1141 tgtttctgac gttaactgtc aggaactgcg agataggtga acttggaaca gtccttacag
     1201 caatgaatgc ggcgtttaag cgaatggaaa agcgaaagga gctatcacct gttcaggggt
     1261 ggatcagggc tacggaggtg acgcgaggta aggatggcag cgcacatccg cattttcact
     1321 gtctgctgat ggtgcaacct tcttggttta aagggaagaa ctacgttaag cacgaacgtt
     1381 gggtagaact ctggcgcgat tgcttgcggg tgaactatga gccgaatatc gatattcggg
     1441 cagtaaaaac taagacaggt gaggttgtgg ccaacgttgc cgagcaactg caaagcgcgg
     1501 ttgctgaaac gctgaaatac tccgttaaac cggaagatat ggcaaacgat cctgagtggt
     1561 ttcttgagct gacgcggcag cttcacaagc gccgttttat ctcgaccggt ggagcgctaa
     1621 aaaacgtcct ccagttggat cgagaaacca atgaggatct tgccattgcc gacgatgtag
     1681 gggatggcac tgatgacggg aagcggacgg cgtttgtctg ggattcaggt aaacggcgtt
     1741 acaaacgcgc ccctgagaag gataaatcgg attaacgtat gaatattaat attgaatacc
     1801 tgaatggaaa taagactatt ggtttatttt ttttaagaag tgaagcggtg attcctgaca
     1861 ggtttaaaaa ccttattttg cttattgatg gattaagttt tggcacattt ggttttcatc
     1921 cgcacgaagg ttttgaggat gaattaattt tatatattca gaaaacaaac gagagggtaa
     1981 aaactctttt tgtgaaaata gatttaaacg gtatcaagtt tggattttta agaacgcatt
     2041 cttagttctg gaaaagagcc agcggcaggc tgaggtgata ggtacgag
//
