LOCUS       NZ_CP043294             1308 bp    DNA     circular CON 24-MAY-2024
DEFINITION  Escherichia coli strain WCHEC025985 plasmid p7_025985, complete
            sequence.
ACCESSION   NZ_CP043294
VERSION     NZ_CP043294.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN12158048
            Assembly: GCF_022559025.1
KEYWORDS    RefSeq.
SOURCE      Escherichia coli
  ORGANISM  Escherichia coli
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Escherichia.
REFERENCE   1  (bases 1 to 1308)
  AUTHORS   Long,H., Feng,Y. and Zong,Z.
  TITLE     The complete genome of Escherichia coli strain WCHEC025985
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1308)
  AUTHORS   Long,H., Feng,Y. and Zong,Z.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-AUG-2019) Center of Infectious Diseases, West China
            Hospital, Sichuan University, Guoxuexiang 37, Chengdu, Sichuan
            610041, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.4.7
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 200.0x
            Sequencing Technology :: Illumina HiSeq; Oxford Nanopore MiniION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022559025.1-RS_2024_05_24
            Annotation Date                   :: 05/24/2024 04:20:03
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,230
            CDSs (total)                      :: 5,108
            Genes (coding)                    :: 4,788
            CDSs (with protein)               :: 4,788
            Genes (RNA)                       :: 122
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 90
            ncRNAs                            :: 10
            Pseudo Genes (total)              :: 320
            CDSs (without protein)            :: 320
            Pseudo Genes (ambiguous residues) :: 0 of 320
            Pseudo Genes (frameshifted)       :: 97 of 320
            Pseudo Genes (incomplete)         :: 228 of 320
            Pseudo Genes (internal stop)      :: 47 of 320
            Pseudo Genes (multiple problems)  :: 48 of 320
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP043294.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1308
                     /organism="Escherichia coli"
                     /mol_type="genomic DNA"
                     /strain="WCHEC025985"
                     /host="Homo sapiens"
                     /db_xref="taxon:562"
                     /plasmid="p7_025985"
                     /geo_loc_name="China: Chengdu, Sichuan"
                     /collection_date="2018-05"
     gene            join(1051..1308,1..279)
                     /locus_tag="FYK42_RS26020"
                     /old_locus_tag="FYK42_26505"
     CDS             join(1051..1308,1..279)
                     /locus_tag="FYK42_RS26020"
                     /old_locus_tag="FYK42_26505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005221105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="WP_014342224.1"
                     /translation="MQTQNVVTDKEREIRKRDLEDKDRKNASERRQEQKNQNFTQVYPL
                     GWKRLRELFRKNPGAAELYSMLAENIDGSCGAVVADQTHLASLLGVGRQTISRYVKWLE
                     EQGVLVKIPVAGKVCAYALNPHEVWKGYDNAKPYAAFLTKTLVNKDGDIQRRIMAMFHG
                     NDARQGMEGDTPEAE"
                     /name="helix-turn-helix domain-containing protein"
     Typing          1052..1228
                     /name="Col(KPHS6)"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="5.61e-88"
ORIGIN
        1 tcgttgcttg gtgttggtag acaaacaata tctaggtacg ttaagtggct agaagagcaa
       61 ggtgttttag taaaaatccc agtagctgga aaggtatgcg cttatgctct caacccgcat
      121 gaagtctgga aaggctacga taatgccaaa ccgtatgccg catttttgac gaaaacccta
      181 gtcaacaaag acggcgatat tcagcgccga atcatggcca tgttccacgg aaacgatgcc
      241 cgtcagggca tggaaggcga cacgccagaa gccgaataga ttcccgttcg ccaaatcgcc
      301 gaagcccgcc cgcaagggcg gtacaggttc cacaaggagc tgcttcacca ctccaccctg
      361 caaagcccta aaacgctctc agaacgcacg taagccattt ttccgcccaa agcccacgtg
      421 agcccgtaga acgtcaaaaa acgcgtcaaa acgcgtttta ttgcgtttta cgggtgattt
      481 cgtgggtctt gccggactgg ttcaccagga cggctagagg cggagtactc cgattatcca
      541 gactgatctc atctctcaaa ttcgtgaaat tagagagatg cgcacttata tgtttcctcg
      601 ccgttggctc agaaacatgt gcggcctgcg gcgctaaaac ccgtctggca ggtggttgcg
      661 ctcactgcgt gaacacaacc accttcccca attttttttg atcggtgcgt tggcaacaaa
      721 aaaatcggaa cccctgaagg ggcccccacg atttttcggt tgccaatggt taaattttca
      781 ccgttttttg cccgactgaa aggagggtgc tacctggaga tctcgcagct cgctgtgaga
      841 tctttttaga taagaaggaa aaaattgtat gttgttgttt ttattatggg tttataaatg
      901 tgttgtcgca tcctaggggc gacaacgttg tcgcatctat aggatgcgac agatataccc
      961 aacatgtcgt gcaaatgcga catgttgaca caaaaaaatg acaactgtat gttactttca
     1021 aacgacatgg tgtcgcagga gagatagtct atgcaaactc aaaatgttgt gacggacaaa
     1081 gaacgggaaa tcagaaaaag agatcttgaa gataaagacc gtaaaaacgc ctcagagcgt
     1141 cgacaggagc aaaaaaacca aaacttcacc caagtatacc ctttaggctg gaagcgtctc
     1201 agagagcttt tcaggaagaa tccgggggca gcagagcttt attcaatgct tgcagaaaac
     1261 attgatggct cttgtggtgc ggttgttgcc gatcaaaccc atttagca
//
