LOCUS       NZ_CP043278             2101 bp    DNA     circular CON 24-MAY-2024
DEFINITION  Escherichia coli strain WCHEC035148 plasmid p3_035148, complete
            sequence.
ACCESSION   NZ_CP043278
VERSION     NZ_CP043278.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN09229080
            Assembly: GCF_022558985.1
KEYWORDS    RefSeq.
SOURCE      Escherichia coli
  ORGANISM  Escherichia coli
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Escherichia.
REFERENCE   1  (bases 1 to 2101)
  AUTHORS   Ma,K., Feng,Y. and Zong,Z.
  TITLE     The complete genome of Escherichia coli strain WCHEC035148 isolate
            S1
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2101)
  AUTHORS   Ma,K., Feng,Y. and Zong,Z.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-AUG-2019) Center of Infectious Diseases, West China
            Hospital, Sichuan University, Guoxuexiang 37, Chengdu, Sichuan
            610041, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.4.7
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 200.0x
            Sequencing Technology :: Illumina HiSeq; Oxford Nanopore MiniION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022558985.1-RS_2024_05_24
            Annotation Date                   :: 05/24/2024 04:15:55
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,869
            CDSs (total)                      :: 4,744
            Genes (coding)                    :: 4,508
            CDSs (with protein)               :: 4,508
            Genes (RNA)                       :: 125
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 93
            ncRNAs                            :: 10
            Pseudo Genes (total)              :: 236
            CDSs (without protein)            :: 236
            Pseudo Genes (ambiguous residues) :: 0 of 236
            Pseudo Genes (frameshifted)       :: 71 of 236
            Pseudo Genes (incomplete)         :: 160 of 236
            Pseudo Genes (internal stop)      :: 43 of 236
            Pseudo Genes (multiple problems)  :: 34 of 236
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP043278.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2101
                     /organism="Escherichia coli"
                     /mol_type="genomic DNA"
                     /strain="WCHEC035148"
                     /host="Homo sapiens"
                     /db_xref="taxon:562"
                     /plasmid="p3_035148"
                     /geo_loc_name="China: Chengdu, Sichuan"
                     /collection_date="2018"
     gene            complement(628..894)
                     /locus_tag="FYK53_RS24230"
                     /old_locus_tag="FYK53_24465"
     CDS             complement(628..894)
                     /locus_tag="FYK53_RS24230"
                     /old_locus_tag="FYK53_24465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001024536.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_001024536.1"
                     /translation="MNINIEYLNGNKTIGLFFLRSEAVIPDRFKNLILLIDGLSFGTFG
                     FHPHEGFEDELILYIQKTNERVKTLFVKIDLNGIKFGFLRTHS"
                     /name="hypothetical protein"
     gene            complement(898..1863)
                     /locus_tag="FYK53_RS24235"
                     /old_locus_tag="FYK53_24470"
     CDS             complement(898..1863)
                     /locus_tag="FYK53_RS24235"
                     /old_locus_tag="FYK53_24470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012421200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_001287824.1"
                     /translation="MSEDKFLSDYSPRDAVWDTQRTLTDSVGGIYQTAAEFERYALRMA
                     SCSGLLRFGWSTIMETGETRLRLRSAQFCRVRHCPVCQWRRTLMWQARFYQALPKIVVD
                     YPSSRWLFLTLTVRNCEIGELGTVLTAMNAAFKRMEKRKELSPVQGWIRATEVTRGKDG
                     SAHPHFHCLLMVQPSWFKGKNYVKHERWVELWRDCLRVNYEPNIDIRAVKTKTGEVVAN
                     VAEQLQSAVAETLKYSVKPEDMANDPEWFLELTRQLHKRRFISTGGALKNVLQLDRETN
                     EDLVIADDVGDGTDDGKRTAFVWDSGKRRYKRAPEKDKSD"
                     /name="protein rep"
     Typing          complement(1239..1470)
                     /name="Col(BS512)"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="2.05e-118"
ORIGIN
        1 tatccgccat ttatccctta agtataaata caaggatcac gcgcgagaat tgcgcaaaaa
       61 ataaccacaa ttttaacccc ccaaaacaag cacccccgaa cggcttaccc caaccttttc
      121 cacacacccg atcaccaaaa cagggaataa aaacaaaacc ctgtcttaca ggtggatggc
      181 ctcacttcgt gaaaccatcc accccgcata agttttttaa tcggtggtgt cgtcaatcac
      241 taaatcggaa ccccaaaggg gacccccacg atttagcatt tgacgagatt aactctcgga
      301 gatggcatca tgcttttaac ggactttaaa aaacggtgaa cggatgcgga ttttaatccg
      361 tgtctgtgag gcgttgagca acgagcaaag cgaggcggta gaaagagagc cagcggcagg
      421 ctcaggacga taatccgggg aaaatgtacc actcgcagag tgttaacatt tgacatcgga
      481 ttgtctatcc tgcattggtg tcgagttggc aaggctgagg ataatgctga ggataatgct
      541 gaggataatg caggatagac agagcactag agattgcatg caatctcgta cctatcacct
      601 cagcctgccg ctggctcttt tccagaacta agaatgcgtt cttaaaaatc caaacttgat
      661 accgtttaaa tctattttca caaaaagagt ttttaccctc tcgtttgttt tctgaatata
      721 taaaattaat tcatcctcaa aaccttcgtg cggatgaaaa ccaaatgtgc caaaacttaa
      781 tccatcaata agcaaaataa ggtttttaaa cctgtcagga atcaccgctt cacttcttaa
      841 aaaaaataaa ccaatagtct tatttccatt caggtattca atattaatat tcatacgtta
      901 atccgattta tccttctcag gggcgcgttt gtaacgccgt ttacctgaat cccagacaaa
      961 cgccgtccgc ttcccgtcat cagtgccatc ccctacatcg tcggcaatga caagatcctc
     1021 attggtttct cgatccaact ggaggacgtt ttttagcgcc ccaccggtcg agataaaacg
     1081 gcgcttgtga agctgccgcg tcagctcaag aaaccactca ggatcgtttg ccatatcttc
     1141 cggtttaacg gagtatttca gcgtttcagc aaccgcgctt tgcagttgct cggcaacgtt
     1201 ggccacaacc tcacctgtct tagtttttac tgcccgaata tcgatattcg gctcatagtt
     1261 cacccgcaag caatcgcgcc agagttctac ccaacgttcg tgcttaacgt agttcttccc
     1321 tttaaaccaa gaaggttgca ccatcagcag acagtgaaaa tgcggatgtg cgctgccatc
     1381 cttacctcgc gtcacctccg tagccctgat ccacccctga acaggtgata gctcctttcg
     1441 cttttccatt cgcttaaacg ccgcattcat tgctgtaagg actgttccaa gttcacctat
     1501 ctcgcagttc ctgacagtta acgtcagaaa caaccatcgg gaagacgggt aatccacaac
     1561 gattttcggt agagcctgat aaaaacgggc ttgccacatg agggttcttc tccactggca
     1621 gacagggcaa tgacggacac ggcaaaattg cgcactacga agccgtaggc gcgtttctcc
     1681 ggtttccatg atggtagacc aaccaaaacg taacaaaccg ctacaggagg ccatacggag
     1741 tgcatagcgc tcgaattcag cagcagtctg gtagataccc ccgacagaat cggtaagcgt
     1801 gcgctgggta tcccaaactg catcacgggg gctgtagtcc gaaaggaatt tatcttctga
     1861 cattaagcct gctccgatct gggcaggctg tgatttgatg tggtatattc atcacgtacc
     1921 tgtgcattgc gagccagtac atgtcaccag agtttgccgc tgaggtgaca cattcgaaat
     1981 gttggggagt gttgacgcac tccccaacgc cgattaaaaa cgcctcaatt ctgctccatt
     2041 ttctttgacc tgtcaaaacc cactcaaagc ctcgtcatta ctgggctaaa ccactatttc
     2101 a
//
