LOCUS       NZ_CP042160             1435 bp    DNA     circular CON 08-OCT-2023
DEFINITION  Staphylococcus aureus strain B3-17D plasmid pSALNC1.4-1, complete
            sequence.
ACCESSION   NZ_CP042160
VERSION     NZ_CP042160.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN12359200
            Assembly: GCF_007726565.1
KEYWORDS    RefSeq.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus.
REFERENCE   1  (bases 1 to 1435)
  AUTHORS   Neyaz,L., Karki,A.B. and Fakhr,M.K.
  TITLE     Comparative genomics of plasmid bearing Staphylococcus aureus
            strains isolated from various retail meats
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1435)
  AUTHORS   Neyaz,L., Karki,A.B. and Fakhr,M.K.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-JUL-2019) Biological Science, The University of Tulsa,
            800 S Tucker Dr, Tulsa, OK 74135, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: CLC Genomic workbench v. 7
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 242.54x
            Sequencing Technology             :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 10/08/2023 02:21:55
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,878
            CDSs (total)                      :: 2,798
            Genes (coding)                    :: 2,703
            CDSs (with protein)               :: 2,703
            Genes (RNA)                       :: 80
            rRNAs                             :: 6, 5, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 5, 5 (5S, 16S, 23S)
            tRNAs                             :: 60
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 95
            CDSs (without protein)            :: 95
            Pseudo Genes (ambiguous residues) :: 0 of 95
            Pseudo Genes (frameshifted)       :: 49 of 95
            Pseudo Genes (incomplete)         :: 45 of 95
            Pseudo Genes (internal stop)      :: 30 of 95
            Pseudo Genes (multiple problems)  :: 26 of 95
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP042160.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1435
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /strain="B3-17D"
                     /isolation_source="retail chicken"
                     /db_xref="taxon:1280"
                     /plasmid="pSALNC1.4-1"
                     /geo_loc_name="USA: Oklahoma"
                     /lat_lon="36.1540 N 95.9928 W"
                     /collection_date="2010-06"
                     /collected_by="Lubna S. Abdalrahman"
     gene            568..1386
                     /locus_tag="FP481_RS14600"
                     /old_locus_tag="FP481_14600"
     CDS             568..1386
                     /locus_tag="FP481_RS14600"
                     /old_locus_tag="FP481_14600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000532202.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_261369538.1"
                     /translation="MSRPKMIYLEDEKTILDFHKNLTGGRLVVYLTYDQSNDRFGPLKN
                     TYDLKVKSYDNGVYKVCWYKNSRKKSNTSIHQKFNLEKRLKMSKEELEKLEEEQRKSHI
                     FEVKNLIKDYVLCNHFDMFWTLTFDPKKYGGEISDDLAYELMSKFLHNMRRRHKRKSDK
                     PFNYIAVPERHKSGQIHWHMITGNVEPNLVDSGKTYKKQKIYNCTDWQYGFTNVQKVRS
                     KSKVSSYMTKYITKDLLYSPVRKHKAKYWSSKGLKLPKVYAGNYSDLRCV"
                     /name="hypothetical protein"
ORIGIN
        1 tgtgtgatat ttggctattt aaagtttaat tggctgtgag gctctgaaaa cgcaaggatg
       61 gaatccgtaa agcgtttggg cagcgctcag agcctcgcag ccacgcgtga gcgttaaaca
      121 ggtataaaat cattagaatt atgcctaagt gtctcaaatg gcttcctatg cgttgtgaga
      181 atgaaattag gatgacattt atgccgagaa aacttttgat atggaaaagg gctatatgct
      241 attgcgtaag caaatattgg tgagtgattg aatggggatt agaccaagca agcaccaata
      301 gaaaggcata tagcccaaag gttccatgtt caaaaggaaa ttggaataaa taaaaaagcg
      361 ctacaggaat agacctgtaa cgctctcagt gctatattat agctaaaaca aataaaaaga
      421 gttacacact ccccgaccaa agtttgttgt gtaacaatga gctttatcaa cttgtatatt
      481 actgtatcag gtaaataaaa tcaagttgat aaaattggat gtgttgtaac tctttttcaa
      541 aataatttga gaaggagttt ttttattatg agtagaccaa aaatgattta tttggaagac
      601 gaaaaaacaa tcttggattt ccacaaaaat ttgacgggag gacgtttggt cgtctacttg
      661 acatacgacc aaagtaacga ccgttttgga ccacttaaaa acacatatga tttgaaggtt
      721 aaatcctatg ataacggcgt ttataaggtc tgttggtaca aaaattcacg aaaaaaatct
      781 aacacttcta tccaccaaaa attcaatcta gaaaagcgct tgaaaatgtc aaaagaagag
      841 ttagaaaaat tggaagagga acaacgaaaa agtcatattt ttgaggttaa aaatttaatt
      901 aaagattatg tattgtgtaa tcactttgat atgttttgga cattaacatt tgatccgaaa
      961 aaatatggcg gagagattag tgatgattta gcttatgagc ttatgagtaa atttttgcat
     1021 aatatgagac ggagacataa acgtaaaagt gataagccgt ttaactatat agcagtgcca
     1081 gaacgtcata agagtggtca aatacattgg catatgataa ctggtaatgt agaacctaat
     1141 ttggttgata gtggtaaaac atataaaaag cagaaaattt ataattgcac agattggcaa
     1201 tatggattta cgaatgttca aaaagtgcgt tcaaaatcaa aagtgagtag ttacatgact
     1261 aaatatatta ctaaagattt gttatatagt cctgtaagaa agcataaagc taaatattgg
     1321 agcagtaagg gattgaagtt gcctaaggtg tatgcaggta attattctga tttgagatgt
     1381 gtgtgatatt tggctattta aagtttaatt ggctgtgagg ctctgaaaac gcaag
//
