LOCUS       NZ_CP042156             1435 bp    DNA     circular CON 08-OCT-2023
DEFINITION  Staphylococcus aureus strain B4-59C plasmid pSALNC1.4-2, complete
            sequence.
ACCESSION   NZ_CP042156
VERSION     NZ_CP042156.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN12359201
            Assembly: GCF_007726525.1
KEYWORDS    RefSeq.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus.
REFERENCE   1  (bases 1 to 1435)
  AUTHORS   Neyaz,L., Karki,A.B. and Fakhr,M.K.
  TITLE     Comparative genomics of plasmid bearing Staphylococcus aureus
            strains isolated from various retail meats
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1435)
  AUTHORS   Neyaz,L., Karki,A.B. and Fakhr,M.K.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-JUL-2019) Biological Science, The University of Tulsa,
            800 S Tucker Dr, Tulsa, OK 74135, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: CLC Genomic workbench v. 7
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 204.33x
            Sequencing Technology             :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 10/08/2023 02:16:41
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,799
            CDSs (total)                      :: 2,718
            Genes (coding)                    :: 2,627
            CDSs (with protein)               :: 2,627
            Genes (RNA)                       :: 81
            rRNAs                             :: 6, 5, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 5, 5 (5S, 16S, 23S)
            tRNAs                             :: 61
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 91
            CDSs (without protein)            :: 91
            Pseudo Genes (ambiguous residues) :: 0 of 91
            Pseudo Genes (frameshifted)       :: 53 of 91
            Pseudo Genes (incomplete)         :: 36 of 91
            Pseudo Genes (internal stop)      :: 35 of 91
            Pseudo Genes (multiple problems)  :: 30 of 91
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP042156.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1435
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /strain="B4-59C"
                     /isolation_source="retail chicken"
                     /db_xref="taxon:1280"
                     /plasmid="pSALNC1.4-2"
                     /geo_loc_name="USA: Oklahoma"
                     /lat_lon="36.1540 N 95.9928 W"
                     /collection_date="2010-06"
                     /collected_by="Lubna S. Abdalrahman"
     gene            complement(245..1141)
                     /locus_tag="FP482_RS14175"
                     /old_locus_tag="FP482_14170"
     CDS             complement(245..1141)
                     /locus_tag="FP482_RS14175"
                     /old_locus_tag="FP482_14170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000532202.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_219726469.1"
                     /translation="MSRPKMIYLEDEKTILDFHKNLTGGRLVVYLTYDQSNDRFGPLKN
                     TYDLKVKSYDNGVYKVCWYKNSRKKSNTSIHQKFNLEKRLKMSKEELEKLEEEQRKSHI
                     FEVKNLIKDYVLCNHFDMFWTLTFDPKKYGGEISDDLAYELMSKFLHNMRRRHKRKSDK
                     PFNYIAVPERHKSGQIHWHMITGNVEPNLVDSGKTYKKQKIYNCTDWQYGFTNVQKVRS
                     KSKVSSYMTKYITKDLLYSPVRKHKAKYWSSKGLKLPKVYAGNYSDLSSILPLYNENGE
                     LKPTHSNDVCDIWLFKV"
                     /name="hypothetical protein"
ORIGIN
        1 attcaatcac tcaccaatat ttgcttacgc aatagcatat agcccttttc catatcaaaa
       61 gttttctcgg cataaatgtc atcctaattt cattctcaca acgcatagga agccatttga
      121 gacacttagg cataattcta atgattttat acctgtttaa cgctcacgcg tggctgcgag
      181 gctctgagcg ctgcccaaac gctttacgga ttccatcctt gcgttttcag agcctcacag
      241 ccaattaaac tttaaatagc caaatatcac acacatcatt gctatgtgtt ggctttaatt
      301 ccccattctc gttatacaga ggtaaaatac tactcaaatc agaataatta cctgcataca
      361 ccttaggcaa cttcaatccc ttactgctcc aatatttagc tttatgcttt cttacaggac
      421 tatataacaa atctttagta atatatttag tcatgtaact actcactttt gattttgaac
      481 gcactttttg aacattcgta aatccatatt gccaatctgt gcaattataa attttctgct
      541 ttttatatgt tttaccacta tcaaccaaat taggttctac attaccagtt atcatatgcc
      601 aatgtatttg accactctta tgacgttctg gcactgctat atagttaaac ggcttatcac
      661 ttttacgttt atgtctccgt ctcatattat gcaaaaattt actcataagc tcataagcta
      721 aatcatcact aatctctccg ccatattttt tcggatcaaa tgttaatgtc caaaacatat
      781 caaagtgatt acacaataca taatctttaa ttaaattttt aacctcaaaa atatgacttt
      841 ttcgttgttc ctcttccaat ttttctaact cttcttttga cattttcaag cgcttttcta
      901 gattgaattt ttggtggata gaagtgttag atttttttcg tgaatttttg taccaacaga
      961 ccttataaac gccgttatca taggatttaa ccttcaaatc atatgtgttt ttaagtggtc
     1021 caaaacggtc gttactttgg tcgtatgtca agtagacgac caaacgtcct cccgtcaaat
     1081 ttttgtggaa atccaagatt gttttttcgt cttccaaata aatcattttt ggtctactca
     1141 taataaaaaa actccttctc aaattatttt gaaaaagagt tacaacacat ccaattttat
     1201 caacttgatt ttatttacct gatacagtaa tatacaagtt gataaagctc attgttacac
     1261 aacaaacttt ggtcggggag tgtgtaactc tttttatttg ttttagctat aatatagcac
     1321 tgagagcgtt acaggtctat tcctgtagcg cttttttatt tattccaatt tccttttgaa
     1381 catggaacct ttgggcccca ttcaatcact caccaatatt tgcttacgca atagc
//
