LOCUS       NZ_CP042155             2880 bp    DNA     circular CON 08-OCT-2023
DEFINITION  Staphylococcus aureus strain B4-59C plasmid pSALNC2.8, complete
            sequence.
ACCESSION   NZ_CP042155
VERSION     NZ_CP042155.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN12359201
            Assembly: GCF_007726525.1
KEYWORDS    RefSeq.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus.
REFERENCE   1  (bases 1 to 2880)
  AUTHORS   Neyaz,L., Karki,A.B. and Fakhr,M.K.
  TITLE     Comparative genomics of plasmid bearing Staphylococcus aureus
            strains isolated from various retail meats
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2880)
  AUTHORS   Neyaz,L., Karki,A.B. and Fakhr,M.K.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-JUL-2019) Biological Science, The University of Tulsa,
            800 S Tucker Dr, Tulsa, OK 74135, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: CLC Genomic workbench v. 7
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 204.33x
            Sequencing Technology             :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 10/08/2023 02:16:41
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,799
            CDSs (total)                      :: 2,718
            Genes (coding)                    :: 2,627
            CDSs (with protein)               :: 2,627
            Genes (RNA)                       :: 81
            rRNAs                             :: 6, 5, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 5, 5 (5S, 16S, 23S)
            tRNAs                             :: 61
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 91
            CDSs (without protein)            :: 91
            Pseudo Genes (ambiguous residues) :: 0 of 91
            Pseudo Genes (frameshifted)       :: 53 of 91
            Pseudo Genes (incomplete)         :: 36 of 91
            Pseudo Genes (internal stop)      :: 35 of 91
            Pseudo Genes (multiple problems)  :: 30 of 91
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP042155.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2880
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /strain="B4-59C"
                     /isolation_source="retail chicken"
                     /db_xref="taxon:1280"
                     /plasmid="pSALNC2.8"
                     /geo_loc_name="USA: Oklahoma"
                     /lat_lon="36.1540 N 95.9928 W"
                     /collection_date="2010-06"
                     /collected_by="Lubna S. Abdalrahman"
     gene            <403..709
                     /locus_tag="FP482_RS14160"
                     /old_locus_tag="FP482_14155"
                     /pseudo=""
     CDS             <403..709
                     /locus_tag="FP482_RS14160"
                     /old_locus_tag="FP482_14155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001622764.1"
                     /note="frameshifted; internal stop; incomplete; partial in
                     the middle of a contig; missing N-terminus; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /name="transposase"
     gene            complement(793..1110)
                     /locus_tag="FP482_RS14165"
                     /old_locus_tag="FP482_14160"
     CDS             complement(793..1110)
                     /locus_tag="FP482_RS14165"
                     /old_locus_tag="FP482_14160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001830557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="staphostatin A"
                     /protein_id="WP_000049867.1"
                     /translation="MSKYQLINIKDNNLEFSEKYWLHILQGVWRPEKISTKPLKITFNK
                     NIFPIYICKEINEDSRRIILNNTDNTNIIIEIIIINHKKIIFNVLNKLSLGVTPKITFI
                     K"
                     /name="staphostatin A"
     gene            complement(1131..2330)
                     /locus_tag="FP482_RS14170"
                     /old_locus_tag="FP482_14165"
     CDS             complement(1131..2330)
                     /locus_tag="FP482_RS14170"
                     /old_locus_tag="FP482_14165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020366922.1"
                     /GO_function="GO:0008234 - cysteine-type peptidase activity
                     [Evidence IEA]"
                     /GO_process="GO:0006508 - proteolysis [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C47 family peptidase"
                     /protein_id="WP_001074681.1"
                     /translation="MAKKICNISTIVFVLAIGLILSLVFSLFFNNVNAEEASQKELPNQ
                     KNTKVNIDKKDIPSAVKKLAEDQYLSRVAALDKLSGEKNSSYTLGEAFKIYKFNQKSDG
                     NYYFPVLNKEGKVVYVVTISPKIANDKNTSSNSDYTINVSPFLSKILNQYENQKFTILT
                     NTKGYFVVTEDNKIKHVLKTPYSGEKNSKNTMESPKNIDLKNFKQTASVTKPIIQFENP
                     KYGVRAQYVNQLKNFKIRETQGNNGWCAGYTMSALLNATYNTDRYNAEAVMRYLHPNLQ
                     GDDFQFTGLTPQEMMKYGKSQGRDTQYLNRMPSYNEVDKLTTNNKGIAILGSRVESTDG
                     IHAGHAMAVVGNAELEGGQEVIMIWNPWDRGFMTQDAESNIIPVSNGDHYQWNSSIYGY
                     "
                     /name="C47 family peptidase"
ORIGIN
        1 cattggaagt atttatgagt ttcatcgaag atgataaact gtccagctta atttgataat
       61 ctaaaatctt aaaaaataaa ggaataataa caaaagtaca caaagtcatt ttccaatcca
      121 atataaaaag cataattatg gaaccaataa ttgttaatac attaggtaaa gtaatgggaa
      181 ccttatgtga tataaaagta tttataacct ttgtatcgtc tactatccta cttaataatt
      241 ctccactttc actcgaatca aaaaaataac tatgctcaaa aaaggtatgt ttaatgaacc
      301 tctatttatt ttgtttacta gctctcccgt aaataatggt agcgaattta ctttttcagt
      361 attaatcatt atgctatgta tctcatttag aaatcacccc aaaggttatg caataagacg
      421 aaatttatta atcgtttgaa ttctgttagt agaaagtcta taagtaaaga tatctagaaa
      481 gttgttaact attataggaa gaatcaaaga attctaagaa atacaattta tcatccagta
      541 tttaataata gatttatgga aggaattaat aataagataa agttaattga acgaatttct
      601 tttggctaca gaaattttaa caacttcaaa acatgcatca tgatgatttt cagtttatat
      661 caagttgaaa aagaagacaa ccaagcctaa tattggactg gttgcctaaa aataaatact
      721 ctcagaatta ttatttaaaa tagtttatta gtatctaaaa atcataaaat tgaaagagtt
      781 actttaagct gtttatttga taaaagtaat tttaggtgtt actcctaaag ataacttatt
      841 caacacattg aaaataatct ttttatggtt gattataatt atttctataa taatattagt
      901 attgtcggta ttatttaaaa ttatcctcct tgaatcttca ttaatttctt tacatatata
      961 tattggaaaa atatttttat taaaagttat ttttaaaggt tttgttgaaa ttttttctgg
     1021 tcgccatact ccttggagta tatgaagcca atatttttct gagaattcca aattattatc
     1081 tttaatatta attaattgat atttactcat aagtttgcct ttttatatta ttaataccca
     1141 taaatagaac tattccattg ataatgatct ccattagata ctggaataat attactttca
     1201 gcatcttgag tcataaaacc acggtcccaa gggttccaaa tcataatcac ttcttgtcca
     1261 ccttctaatt ctgcattacc aactacagcc atagcatgtc ctgcatgaat accgtctgtt
     1321 gattctacac gacttcctaa aatagcaatg cctttattat tagtagtcaa tttatcaact
     1381 tcattataag atggcattct attaagatat tgagtatctc taccctgtga tttcccatac
     1441 ttcatcattt cttgaggtgt taaacctgta aattggaaat catcaccttg taaattcgga
     1501 tgtaaatatc tcattactgc ctcagcatta taacgatctg tattataagt tgcattcagt
     1561 aatgctgaca ttgtatatcc agcacaccaa ccattattac cttgtgtttc tctgatttta
     1621 aagtttttta attgattgac atattgtgct cggactccat atttgggatt ctcaaattgt
     1681 ataataggtt ttgtaactga agctgtttgt ttaaagtttt ttaaatcaat atttttgggg
     1741 gattccatcg tatttttaga attcttttca ccactatatg gagtttttaa tacatgttta
     1801 attttattat cttctgtaac tacaaaataa ccttttgtat tggttaaaat tgtgaatttc
     1861 tgattttcat actgatttaa tatttttgaa agaaacggag aaacattaat tgtataatca
     1921 ctatttgaac ttgtattttt atcgtttgca attttaggag agattgtaac aacatatact
     1981 actttacctt ctttatttaa cacagggaaa tagtaattac catcactctt ctgattgaat
     2041 ttataaattt taaatgcttc acctaatgtg taagatgaat ttttttctcc ggataatttg
     2101 tcaagtgctg ctacacgtga aagatattga tcttcagcta gctttttaac tgccgatgga
     2161 atatcttttt tatcaatatt aacttttgta tttttttgat ttggtagttc tttttgtgat
     2221 gcttcctcag cattcacatt attaaaaaac agactaaata ccaaactaag tattaaacca
     2281 attgcaagaa caaagacaat cgtactaatg ttacatattt ttttagccat agaaaacact
     2341 cctttttatt tttgtaactc tttcattatt aatataacac tctttctgct tttttattat
     2401 ttttttccta aatgtttata ttaacgacat atttgtataa aatattaatt gataacgaaa
     2461 atatttttat taacttaata cctcaataat cttattgaat aaatttattg aggtgtacaa
     2521 tgacagttgg ggctaagttt aaacacttta attaagttag acattgaccc tctgcatcaa
     2581 tacactattt ataatagttt tattattttt ttcttctaaa tttgatataa aattagtatt
     2641 atattcttaa aattacggat aatttttttg acgatatact tattatctat tgcttttaat
     2701 atttcagata tatcacgata attcaatgcg taccttaagt attagcctac gcctatagtg
     2761 atgacattct tatcgaatta tttatacttc gaaagattaa ataatttttt aagattttag
     2821 attatcaaat taagctggat agtttatcat cttcgatgaa actcataaat acttccaatg
//
