LOCUS       NZ_CP042109             1562 bp    DNA     circular CON 08-OCT-2023
DEFINITION  Staphylococcus aureus strain B8-13D plasmid pSALNCG1.5, complete
            sequence.
ACCESSION   NZ_CP042109
VERSION     NZ_CP042109.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN12359203
            Assembly: GCF_007726545.1
KEYWORDS    RefSeq.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus.
REFERENCE   1  (bases 1 to 1562)
  AUTHORS   Neyaz,L., Karki,A.B. and Fakhr,M.K.
  TITLE     Comparative genomics of plasmid bearing Staphylococcus aureus
            strains isolated from various retail meats
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1562)
  AUTHORS   Neyaz,L., Karki,A.B. and Fakhr,M.K.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-JUL-2019) Biological Science, The University of Tulsa,
            800 S Tucker Dr, Tulsa, OK 74135, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: CLC Genomic workbench v. 7
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 169.45x
            Sequencing Technology             :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 10/08/2023 02:14:27
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,838
            CDSs (total)                      :: 2,758
            Genes (coding)                    :: 2,668
            CDSs (with protein)               :: 2,668
            Genes (RNA)                       :: 80
            rRNAs                             :: 6, 5, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 5, 5 (5S, 16S, 23S)
            tRNAs                             :: 60
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 48 of 90
            Pseudo Genes (incomplete)         :: 41 of 90
            Pseudo Genes (internal stop)      :: 30 of 90
            Pseudo Genes (multiple problems)  :: 26 of 90
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP042109.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1562
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /strain="B8-13D"
                     /isolation_source="retail chicken gizzard"
                     /db_xref="taxon:1280"
                     /plasmid="pSALNCG1.5"
                     /geo_loc_name="USA: Oklahoma"
                     /lat_lon="36.1540 N 95.9928 W"
                     /collection_date="2010-06"
                     /collected_by="Lubna S. Abdalrahman"
     gene            join(953..1562,1..5)
                     /locus_tag="FP484_RS14640"
     CDS             join(953..1562,1..5)
                     /locus_tag="FP484_RS14640"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_186365001.1"
                     /translation="MSRPKMIYLEDEKTILDFHKNLTGGRLVVYLTYDQSNDRFGPLKN
                     TYDLKVKSYDNGVYKVCWYKNSRKKSNTSIHQKFNLEKRLKMSKEELEKLEEEQRKSHI
                     FEVKNLIKDYVLCNHFDMFWTLTFDPKKYGGEISDDLAYELMSKFLHNMRRRHKRKSDK
                     PFNYIAVPERHKSGQIHWHMITGNVEPNLVDSGKTYKKQKR"
                     /name="hypothetical protein"
     gene            join(1536..1562,1..414)
                     /locus_tag="FP484_RS14375"
                     /old_locus_tag="FP484_14375"
     CDS             join(1536..1562,1..414)
                     /locus_tag="FP484_RS14375"
                     /old_locus_tag="FP484_14375"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_261370724.1"
                     /translation="MVKHIKSRKDKPFNYIAVPERHKSGQIHWHMITGNVEPNLVDSGK
                     TYKKQKIYNCTDWQYGFTNVQKVRSKSKVSSYMTKYITKDLLYSPVRKHKAKYWSSKGL
                     KLPKVYAGNYSDLSSILPLYNENGELKPTHSNDVCDIWLFKV"
                     /name="hypothetical protein"
ORIGIN
        1 gataagccgt ttaactatat agcagtgcca gaacgtcata agagtggtca aatacattgg
       61 catatgataa ctggtaatgt agaacctaat ttggttgata gtggtaaaac atataaaaag
      121 cagaaaattt ataattgcac agattggcaa tatggattta cgaatgttca aaaagtgcgt
      181 tcaaaatcaa aagtgagtag ttacatgact aaatatatta ctaaagattt gttatatagt
      241 cctgtaagaa agcataaagc taaatattgg agcagtaagg gattgaagtt gcctaaggtg
      301 tatgcaggta attattctga tttgagtagt attttacctc tgtataacga gaatggggaa
      361 ttaaagccaa cacatagcaa tgatgtgtgt gatatttggc tatttaaagt ttaattggct
      421 gtgaggctct gaaaacgcaa ggatggaatc cgtaaagcgt ttgggcagcg ctcagagcct
      481 cgcagccacg cgtgagcgtt aaacaggtat aaaatcatta gaattatgcc taagtgtctc
      541 aaatggcttc ctatgcgttg tgagaatgaa attaggatga catttatgcc gagaaaactt
      601 ttgatatgga aaagggctat atgctattgc gtaagcaaat attggtgagt gattgaatgg
      661 ggattagacc aagcaagcac caatagaaag gcatatagcc caaaggttcc atgttcaaaa
      721 ggaaattgga ataaataaaa aagcgctaca ggaatagacc tgtaacgctc tcagtgctat
      781 attatagcta aaacaaataa aaagagttac acactccccg accaaagttt gttgtgtaac
      841 aatgagcttt atcaacttgt atattactgt atcaggtaaa taaaatcaag ttgataaaat
      901 tggatgtgtt gtaactcttt ttcaaaataa tttgagaagg agttttttta ttatgagtag
      961 accaaaaatg atttatttgg aagacgaaaa aacaatcttg gatttccaca aaaatttgac
     1021 gggaggacgt ttggtcgtct acttgacata cgaccaaagt aacgaccgtt ttggaccact
     1081 taaaaacaca tatgatttga aggttaaatc ctatgataac ggcgtttata aggtctgttg
     1141 gtacaaaaat tcacgaaaaa aatctaacac ttctatccac caaaaattca atctagaaaa
     1201 gcgcttgaaa atgtcaaaag aagagttaga aaaattggaa gaggaacaac gaaaaagtca
     1261 tatttttgag gttaaaaatt taattaaaga ttatgtattg tgtaatcact ttgatatgtt
     1321 ttggacatta acatttgatc cgaaaaaata tggcggagag attagtgatg atttagctta
     1381 tgagcttatg agtaaatttt tgcataatat gagacggaga cataaacgta aaagtgataa
     1441 gccgtttaac tatatagcag tgccagaacg tcataagagt ggtcaaatac attggcatat
     1501 gataactggt aatgtagaac ctaatttggt tgatagtggt aaaacatata aaaagcagaa
     1561 aa
//
