LOCUS       NZ_CP042044             1435 bp    DNA     circular CON 08-OCT-2023
DEFINITION  Staphylococcus aureus strain B2-15A plasmid pSALNCL1.4, complete
            sequence.
ACCESSION   NZ_CP042044
VERSION     NZ_CP042044.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN12353686
            Assembly: GCF_007726495.1
KEYWORDS    RefSeq.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus.
REFERENCE   1  (bases 1 to 1435)
  AUTHORS   Neyaz,L., Karki,A.B. and Fakhr,M.K.
  TITLE     Comparative genomics of plasmid bearing Staphylococcus aureus
            strains isolated from various retail meats
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1435)
  AUTHORS   Neyaz,L., Karki,A.B. and Fakhr,M.K.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-JUL-2019) Biological Science, The University of Tulsa,
            800 S Tucker Dr, Tulsa, OK 74135, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: CLC genomic workbench v. 7
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 214.76x
            Sequencing Technology             :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 10/08/2023 02:49:23
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,825
            CDSs (total)                      :: 2,744
            Genes (coding)                    :: 2,658
            CDSs (with protein)               :: 2,658
            Genes (RNA)                       :: 81
            rRNAs                             :: 6, 5, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 5, 5 (5S, 16S, 23S)
            tRNAs                             :: 61
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 86
            CDSs (without protein)            :: 86
            Pseudo Genes (ambiguous residues) :: 0 of 86
            Pseudo Genes (frameshifted)       :: 49 of 86
            Pseudo Genes (incomplete)         :: 36 of 86
            Pseudo Genes (internal stop)      :: 31 of 86
            Pseudo Genes (multiple problems)  :: 27 of 86
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP042044.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1435
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /strain="B2-15A"
                     /isolation_source="retail chicken liver"
                     /db_xref="taxon:1280"
                     /plasmid="pSALNCL1.4"
                     /geo_loc_name="USA: Oklahoma"
                     /lat_lon="36.1540 N 95.9928 W"
                     /collection_date="2010-06"
                     /collected_by="Lubna S. Abdalrahman"
     gene            complement(join(569..1435,1..30))
                     /locus_tag="FP478_RS14255"
                     /old_locus_tag="FP478_14255"
     CDS             complement(join(569..1435,1..30))
                     /locus_tag="FP478_RS14255"
                     /old_locus_tag="FP478_14255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000532202.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_186364755.1"
                     /translation="MSRPKMIYLELEDEKTILDFHKNLTGGRLVLTYDQSNDRFGPLKN
                     TYDLKVKSYDNGVYKVCWYKNSRKKSNTSIHQKFNLEKRLKMSKEELEKLEEEQRKSHI
                     FEVKNLIKDYVLCNHFDMFWTLTFDPKKYGGEISDDLAYELMSKFLHNMRRRHKRKSDK
                     PFNYIAVPERHKSGQIHWHMITGNVEPNLVDSGKTYKKQKIYNCTDWQYGFTNVQKVRS
                     KSKVSSYMTKYITKDLLYSPVRKHKAKYWSSKGLKLPKVYAGNYSDLSSILPLYNENGE
                     LKPTHSNDVCDIWLFKV"
                     /name="hypothetical protein"
ORIGIN
        1 ttccaaataa atcatttttg gtctactcat aataaaaaaa ctccttctca aattattttg
       61 aaaaagagtt acaacacatc caattttatc aacttgattt tatttacctg atacagtaat
      121 atacaagttg ataaagctca ttgttacaca acaaactttg gtcggggagt gtgtaactct
      181 ttttatttgt tttagctata atatagcact gagagcgtta caggtctatt cctgtagcgc
      241 ttttttattt attccaattt ccttttgaac atggaacctt tgggctatat gcctttctat
      301 tggtgcttgc ttggtctaat ccccattcaa tcactcacca atatttgctt acgcaatagc
      361 atatagccct tttccatatc aaaagttttc tcggcataaa tgtcatccta atttcattct
      421 cacaacgcat aggaagccat ttgagacact taggcataat tctaatgatt ttatacctgt
      481 ttaacgctca cgcgtggctg cgaggctctg agcgctgccc aaacgcttta cggattccat
      541 ccttgcgttt tcagagcctc acagccaatt aaactttaaa tagccaaata tcacacacat
      601 cattgctatg tgttggcttt aattccccat tctcgttata cagaggtaaa atactactca
      661 aatcagaata attacctgca tacaccttag gcaacttcaa tcccttactg ctccaatatt
      721 tagctttatg ctttcttaca ggactatata acaaatcttt agtaatatat ttagtcatgt
      781 aactactcac ttttgatttt gaacgcactt tttgaacatt cgtaaatcca tattgccaat
      841 ctgtgcaatt ataaattttc tgctttttat atgttttacc actatcaacc aaattaggtt
      901 ctacattacc agttatcata tgccaatgta tttgaccact cttatgacgt tctggcactg
      961 ctatatagtt aaacggctta tcacttttac gtttatgtct ccgtctcata ttatgcaaaa
     1021 atttactcat aagctcataa gctaaatcat cactaatctc tccgccatat tttttcggat
     1081 caaatgttaa tgtccaaaac atatcaaagt gattacacaa tacataatct ttaattaaat
     1141 ttttaacctc aaaaatatga ctttttcgtt gttcctcttc caatttttct aactcttctt
     1201 ttgacatttt caagcgcttt tctagattga atttttggtg gatagaagtg ttagattttt
     1261 ttcgtgaatt tttgtaccaa cagaccttat aaacgccgtt atcataggat ttaaccttca
     1321 aatcatatgt gtttttaagt ggtccaaaac ggtcgttact ttggtcgtat gtcaagacca
     1381 aacgtcctcc cgtcaaattt ttgtggaaat ccaagattgt tttttcgtct tccaa
//
