LOCUS       NZ_CP041343             1718 bp    DNA     circular CON 23-JUN-2024
DEFINITION  Escherichia coli strain CCUG 73778 plasmid pSUH-6, complete
            sequence.
ACCESSION   NZ_CP041343
VERSION     NZ_CP041343.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN12169096
            Assembly: GCF_009577985.1
KEYWORDS    RefSeq.
SOURCE      Escherichia coli
  ORGANISM  Escherichia coli
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Escherichia.
REFERENCE   1  (bases 1 to 1718)
  AUTHORS   Jaen-Luchoro,D., Busquets,A., Salva-Serra,F., Ahren,C., Karami,N.
            and Moore,E.R.B.
  TITLE     Complete genome sequence of the ESBL producing Escherichia coli
            strain CCUG 73778
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1718)
  AUTHORS   Jaen-Luchoro,D., Busquets,A., Salva-Serra,F., Ahren,C., Karami,N.
            and Moore,E.R.B.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-JUL-2019) Infectious Diseases, University of
            Gothenburg - CCUG, Guldhedsgatan 10, Box 7193, Gothenburg, Vastra
            Gotaland 40234, Sweden
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: SPAdes v. 3.11.1
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 200.0x
            Sequencing Technology :: Illumina MiSeq; Oxford Nanopore MiniION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_009577985.1-RS_2024_06_23
            Annotation Date                   :: 06/23/2024 04:13:19
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,303
            CDSs (total)                      :: 5,189
            Genes (coding)                    :: 4,967
            CDSs (with protein)               :: 4,967
            Genes (RNA)                       :: 114
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 87
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 222
            CDSs (without protein)            :: 222
            Pseudo Genes (ambiguous residues) :: 0 of 222
            Pseudo Genes (frameshifted)       :: 89 of 222
            Pseudo Genes (incomplete)         :: 154 of 222
            Pseudo Genes (internal stop)      :: 44 of 222
            Pseudo Genes (multiple problems)  :: 56 of 222
            Pseudo Genes (short protein)      :: 1 of 222
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP041343.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1718
                     /organism="Escherichia coli"
                     /mol_type="genomic DNA"
                     /strain="CCUG 73778"
                     /isolation_source="blood"
                     /host="Homo sapiens"
                     /culture_collection="CCUG:73778"
                     /db_xref="taxon:562"
                     /plasmid="pSUH-6"
                     /geo_loc_name="Sweden:Gothenburg"
                     /collection_date="2008-12-18"
     gene            complement(84..320)
                     /locus_tag="FMA85_RS26130"
                     /old_locus_tag="FMA85_26960"
     CDS             complement(84..320)
                     /locus_tag="FMA85_RS26130"
                     /old_locus_tag="FMA85_26960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016230891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_016230891.1"
                     /translation="MTRLTNLTPAEKKFIDDAIAAAERAAGKKLNQPNRHIVLNRARAQ
                     IESQRYADRQRALREDERQQSDFAWSRPRAPRR"
                     /name="hypothetical protein"
     gene            complement(1184..1588)
                     /locus_tag="FMA85_RS26135"
                     /old_locus_tag="FMA85_26965"
     CDS             complement(1184..1588)
                     /locus_tag="FMA85_RS26135"
                     /old_locus_tag="FMA85_26965"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_061604172.1"
                     /translation="MKILAAMEIADCDFEHMDMDVLVGALLKLKLWDSHHHNLNMQGKR
                     SFLDDLRADGIEAIKKYEAEIESENESFAEERLILRIYQNELGLWLGRLFCGEAEIGQC
                     GVYGSADEVRTAARQSGILCDSIEIFQKDA"
                     /name="hypothetical protein"
     Typing          complement(478..562)
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="96.512"
                     /coverage="100.0"
                     /evalue="3.06e-32"
ORIGIN
        1 ctgcgcgact gcatagctat gcacgcgggt gaaccgcagg tgatttcgca gcatcagcac
       61 cactaaaccg ccaaaatccg caatcagcgg cgcggcgcgc gcggacgtga ccaggcaaaa
      121 tcggactgct gccgctcatc ctcacgtaat gcacgctggc ggtcggcgta acgctgcgac
      181 tcaatctgcg cacgcgctct gttcaggacg atgtgccggt taggctgatt gagcttcttc
      241 ccggccgcac gttcggcagc ggctatagcg tcgtcgataa actttttctc agcgggggtc
      301 aggtttgtca gtctcgtcat gtttatctcc gtatgagaat agcccctgca gtctgccaga
      361 cacagtagga acgatgaagc gtaagcgacg gtgaaaggca gtcagaaacg gtgaacggga
      421 gcggatttta atccggtgcc gtgaggcgtt ggacaagccg caggcgcgtc agtggattta
      481 gcgggtttcg gggcgcagcc ctgaaccagt cacgtagcgc tagcggagtg tatactggct
      541 taatatgttg gcataggtgc ggttatcagg aaagtgcgtc atgtggcagg tgtgatatgt
      601 ggctcagaag cgtccgcaat accatgcccg aatagtgaaa tgatgcctcc tcgctcactc
      661 ggtcgctacg ctccggacgt gagactgcgg cgggcactac aacttttttc acatacatga
      721 agtgaggtgt gacggggatc tttttgaaaa atcaggctac agatgtacaa aagccccgtg
      781 acagaatcac agggcttcgg tactctaatt cttcgcagat acctgccagg atcagacgta
      841 gcaatcctat cctagcaggg ctggctagcc ttgtcactac cagcttaata ccattcaacg
      901 acattaaaat catatctgca cccttgaaac tcaggtctac gccccggact ccggcaggat
      961 aaacaggcaa acggtggaaa cgtaacttag ccgcgaaaga gttaagctct accccgtctc
     1021 gctgtacgat aacaggcacc tgataaagtg agattcaagg caggagttgc ggtgaaatgc
     1081 gattgcccag tctggcacaa cacccacaca atcagaacaa catagaacga cctgacgctg
     1141 gtcgctccgc tccccgtttt ctggtgtacc caccacgggg gcattaggca tccttttgaa
     1201 aaatttcgat gctatcgcac aaaataccgc tttgacgcgc agctgttcga acctcatcag
     1261 ccgatccata aacaccacac tgaccgatct cagcctcacc acaaaagagc ctccctaacc
     1321 ataagccaag ctcgttctga tagatcctca gtattaatcg ctcctccgca aaggactcat
     1381 tctcagattc aatttcagcc tcgtatttct taatagcctc aataccatcc gctcttaaat
     1441 catcgagaaa gctcctctta ccttgcatgt tcaagttgtg atggtggcta tcccacaatt
     1501 ttaatttcag taaagcccct actaagacat ccatatccat atgttcaaaa tcacaatcag
     1561 ctatttccat tgcagccaaa atcttcatac accctccgat ttaccataac atccgttatc
     1621 agcaccccct gacaggccct cagcgcaatt ctgacgcatc agagccgttt ccggcacatt
     1681 tcctcaccca catcccggaa aaacgcccct gatgattt
//
