LOCUS       NZ_CP041232             4148 bp    DNA     circular CON 22-OCT-2023
DEFINITION  Bacteroides xylanisolvens strain H207 plasmid unnamed2, complete
            sequence.
ACCESSION   NZ_CP041232
VERSION     NZ_CP041232.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN12137749
            Assembly: GCF_006546965.1
KEYWORDS    RefSeq.
SOURCE      Bacteroides xylanisolvens
  ORGANISM  Bacteroides xylanisolvens
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae;
            Bacteroides.
REFERENCE   1  (bases 1 to 4148)
  AUTHORS   Ross,B.D., Verster,A.J., Radey,M.C., Schmidtke,D.T., Pope,C.E.,
            Hoffman,L.R., Hajjar,A., Peterson,S.B., Borenstein,E. and Mougous,J.
  TITLE     Acquired interbacterial defense systems protect against interspecies
            antagonism in the human gut microbiome
  JOURNAL   bioRxivorg, 471110 (2018)
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4148)
  AUTHORS   Ross,B.D., Verster,A.J., Radey,M.C., Schmidtke,D.T., Pope,C.E.,
            Hoffman,L.R., Hajjar,A., Peterson,S.B., Borenstein,E. and
            Mougous,J.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-JUN-2019) Microbiology, University of Washington, 1959
            NE Pacific St Box 357735, Seattle, WA 98195, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 12-JUN-2019
            Assembly Method                   :: Unicycler v. 0.4.8-beta
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 53.0x
            Sequencing Technology             :: Illumina HiSeq; PacBio Sequel
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 10/22/2023 02:48:52
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,231
            CDSs (total)                      :: 5,137
            Genes (coding)                    :: 5,032
            CDSs (with protein)               :: 5,032
            Genes (RNA)                       :: 94
            rRNAs                             :: 5, 5, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 5, 5, 5 (5S, 16S, 23S)
            tRNAs                             :: 77
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 29 of 105
            Pseudo Genes (incomplete)         :: 67 of 105
            Pseudo Genes (internal stop)      :: 22 of 105
            Pseudo Genes (multiple problems)  :: 12 of 105
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP041232.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4148
                     /organism="Bacteroides xylanisolvens"
                     /mol_type="genomic DNA"
                     /strain="H207"
                     /host="Homo sapiens"
                     /db_xref="taxon:371601"
                     /plasmid="unnamed2"
                     /geo_loc_name="USA:Seattle"
                     /collection_date="2014"
     gene            106..1131
                     /locus_tag="FKZ68_RS26660"
                     /old_locus_tag="FKZ68_26660"
     CDS             106..1131
                     /locus_tag="FKZ68_RS26660"
                     /old_locus_tag="FKZ68_26660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008657007.1"
                     /GO_function="GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA]"
                     /GO_process="GO:0006270 - DNA replication initiation
                     [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="WP_004295509.1"
                     /translation="MKKKLPITKNKDVVVSWVYTWSKQQDMSIHEQRIVLRILEACQAE
                     LKGVKLKDYAGTKRKFEHGLWDVDAQMHVSDVIFSGRDYNEIIAALDSLAGRFFTYEDD
                     EEWWKCGFISNPKYKKRTGIITFRVSNDLWDVFTKFAKGYREFELNKALALPTGYSLRF
                     YMLMSGQVYPLDISLENLKDRLGIPADKYKDKNGKDRIDHFEERVLKPAKAALDESCPY
                     TFNYVKVRENPNNKRSKVTGFRFYPVYQPQFRDEELEGKELQAKVTARYQIDSHVYEYL
                     RYSCGFTSEEINRNKETFITAQEKITDLIGELALLNGKSREKNNPKGWIINALKGKIKD
                     K"
                     /name="replication initiation protein"
     gene            complement(1168..1398)
                     /locus_tag="FKZ68_RS26665"
                     /old_locus_tag="FKZ68_26665"
     CDS             complement(1168..1398)
                     /locus_tag="FKZ68_RS26665"
                     /old_locus_tag="FKZ68_26665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005683050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_004295510.1"
                     /translation="MGTTEHEEPRFFFILNKGAKSGGEITHAVLNGSIVSKPAGWDAFH
                     GLALAREKLSSEEIQQQMKELGVEMEIVPLI"
                     /name="hypothetical protein"
     gene            complement(1418..1870)
                     /gene="mbpC"
                     /locus_tag="FKZ68_RS26670"
                     /old_locus_tag="FKZ68_26670"
     CDS             complement(1418..1870)
                     /gene="mbpC"
                     /locus_tag="FKZ68_RS26670"
                     /old_locus_tag="FKZ68_26670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004295511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mobilization protein MbpC"
                     /protein_id="WP_004295511.1"
                     /translation="METNSHPEAAASNVKQGQYSPRKRKDTTPRVNPQLAVELVYQELK
                     RVEVYTKRIEDATARKVQIDGKSLESAENRLKNVLADFERQGYRMKNGGYVDKRISFYS
                     ILCAVISLLFACFMCYLWTDAAKDRDNYKQYYEYYQEQAREQKGNK"
                     /name="mbpC"
     gene            complement(1827..2621)
                     /gene="mbpB"
                     /locus_tag="FKZ68_RS26675"
                     /old_locus_tag="FKZ68_26675"
     CDS             complement(1827..2621)
                     /gene="mbpB"
                     /locus_tag="FKZ68_RS26675"
                     /old_locus_tag="FKZ68_26675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007560590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mobilization protein MbpB"
                     /protein_id="WP_007560590.1"
                     /translation="MIGKGKSISHGVAALEYDLAKEINGQAVATEIARHELYGCTGAEM
                     VQEMKPYHIDFPNVKNNCLRFEVSPSIEESATFTDADWAELGNDFMQRMGLANHQYIII
                     RHSGTESKKEQAHLHILANRVSLSGELYRDNWIGKKATEAANAIAKERNFVQSQDIGKV
                     NKAEIKEAMDGVLKKMQGFDFTKFKEELGKRGFKVREARASTGKLNGYYVTARSGTEYK
                     ASEIGKGYTLAHIERTQSKLKCNSMNISHGNKLTPGSGSFQR"
                     /name="mbpB"
     gene            complement(2618..2917)
                     /gene="mbpA"
                     /locus_tag="FKZ68_RS27495"
                     /old_locus_tag="FKZ68_26680"
     CDS             complement(2618..2917)
                     /gene="mbpA"
                     /locus_tag="FKZ68_RS27495"
                     /old_locus_tag="FKZ68_26680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004327437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mobilization protein MbpA"
                     /protein_id="WP_004327437.1"
                     /translation="MELRRNEKITFRCTELEKDALAEQAARCSLSVSEYCRSLSLGGRP
                     RERYTEEERQLLRDIAQLKGTLQRLNNYFGGRQYREVFEENRALITELKKILSR"
                     /name="mbpA"
     gene            complement(3110..3307)
                     /locus_tag="FKZ68_RS26685"
                     /old_locus_tag="FKZ68_26685"
     CDS             complement(3110..3307)
                     /locus_tag="FKZ68_RS26685"
                     /old_locus_tag="FKZ68_26685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007209655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_004295503.1"
                     /translation="MVEYCVYWLENGEPMHEVFSSLAAAEMYSCAIRGKENIEWVEVSE
                     EETIDLDELEDMFPDDFCGV"
                     /name="hypothetical protein"
     gene            complement(3318..3593)
                     /locus_tag="FKZ68_RS26690"
                     /old_locus_tag="FKZ68_26690"
     CDS             complement(3318..3593)
                     /locus_tag="FKZ68_RS26690"
                     /old_locus_tag="FKZ68_26690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004327436.1"
                     /GO_function="GO:0004519 - endonuclease activity [Evidence
                     IEA]"
                     /GO_process="GO:0006401 - RNA catabolic process [Evidence
                     IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system YoeB family toxin"
                     /protein_id="WP_004327436.1"
                     /translation="MMYTIRVSDGVDKVIAKWKKSNPNLFKKYKKIYKELLEHPKTGLG
                     HPEALRGGGDITWSRHITAHDRIIYDIYEEVVEVYILEVEGHYNDK"
                     /name="type II toxin-antitoxin system YoeB family toxin"
     gene            complement(3590..3841)
                     /locus_tag="FKZ68_RS26695"
                     /old_locus_tag="FKZ68_26695"
     CDS             complement(3590..3841)
                     /locus_tag="FKZ68_RS26695"
                     /old_locus_tag="FKZ68_26695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004295507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_004295507.1"
                     /translation="MEALSVREYRNNLAASFTKADNGEQVLIRRKNEIYALVKVGREDL
                     MITPELQARIDKAREEIKSGKCVTLKSSEDIDAYFDSL"
                     /name="hypothetical protein"
ORIGIN
        1 ctttgggagt ttaaaagtaa attagtcccc acactttggg agttttaccc ctcttttttt
       61 gttttaatgt ggggattgtg tatatttgca gcaaatcaat cgtttatgaa aaagaaacta
      121 cctattacca agaataaaga tgttgttgtt tcatgggtat atacatggtc aaaacagcaa
      181 gacatgtcca tacacgaaca aagaatagtt cttcgcatac tggaagcgtg ccaagctgaa
      241 ctaaagggag taaaactgaa agattatgca ggcacgaaac gcaagtttga gcatggactt
      301 tgggatgttg atgcacaaat gcatgtatct gacgttattt tttccggacg tgattacaat
      361 gaaatcatag ccgcactcga ttctttggca ggacgttttt ttacttacga agatgacgag
      421 gaatggtgga agtgcggatt tatatctaac ccaaaatata aaaaacgcac tggcattata
      481 acctttcgtg tgtctaacga cctttgggat gtgtttacca agttcgccaa ggggtacaga
      541 gaatttgagt taaacaaggc tcttgcgcta cctactgggt attcccttag gttttacatg
      601 ttaatgagtg ggcaggtgta ccctttggat atatcccttg aaaacttgaa agaccgtctt
      661 ggcatacctg cggacaaata caaggacaag aacggaaaag acagaataga tcattttgag
      721 gaaagagttt tgaaaccagc aaaggctgcg cttgatgaga gctgcccata cactttcaac
      781 tacgtgaaag tgcgtgaaaa cccaaacaac aaacgtagca aggtgaccgg gtttaggttc
      841 tacccggtct atcaaccaca gttcagagat gaagaactgg aagggaaaga attgcaagca
      901 aaggttacag cacgatatca gatagacagc catgtgtacg agtacctccg ttattcctgc
      961 ggcttcacat cggaagagat aaaccggaac aaagagacat tcataacggc acaagaaaag
     1021 ataaccgacc ttatcggaga actggctctc ctaaacggaa aatcacgaga aaagaacaat
     1081 ccgaaagggt ggattataaa cgcccttaaa gggaaaatca aggataagta acaagattac
     1141 ccggctgaaa cactccgggt aatcttgtca aatcagagga acgatttcca tttctacacc
     1201 aagttctttc atctgctgtt gtatttcctc gctgcttagt ttctctctcg ccagtgcaag
     1261 cccatgaaag gcgtcccagc ctgccggctt cgaaacgata ctaccgttta ggacggcatg
     1321 ggtgatttcg ccgccggact tcgcaccctt gttcagtatg aagaagaacc ggggttcttc
     1381 gtgttccgtt gttcccataa ttcgtaaagt tagatgttta tttattcccc ttttgttccc
     1441 ttgcctgctc ttggtagtat tcataatact gcttgtagtt gtcccggtct ttggctgcat
     1501 ccgtccaaag atagcacatg aaacaagcga acaataggga gataacagca caaaggattg
     1561 agtagaacga aattcgtttg tccacataac cgccgttttt cattctgtac ccctgccgtt
     1621 caaagtccgc caacacgttt tttaggcgat tttcggcact ttcaaggctt ttcccgtcta
     1681 tttgtacctt tcgggctgtt gcgtcctcta tgcgcttcgt atagacttca acacgcttta
     1741 gttcttgata caccagttct accgcaagct gcgggtttac ccttggcgtt gtatcttttc
     1801 ttttccgggg gctgtactgt ccctgcttaa cgttggaagc tgccgcttcc gggtgtgagt
     1861 ttgtttccat gagatatgtt cattgagttg cacttcagtt tgctttgtgt ccgctcgata
     1921 tgggcgagag tgtagccttt ccctatctcg cttgccttat actccgtacc gcttcgggct
     1981 gtgacatagt agccgttaag tttcccggtg cttgccctgg cttcccggac tttaaaacct
     2041 ctcttaccaa gttcttcctt gaatttggta aagtcaaagc cctgcatctt cttcaatacg
     2101 ccgtccatgg cttccttgat ttccgctttg ttgactttgc caatgtcctg cgactgtaca
     2161 aagttccgtt ccttggctat ggcattggcg gcttccgttg cctttttccc tatccagttg
     2221 tcccggtaca gttccccgga aagggaaacc cggtttgcca gtatgtgcag gtgggcttgc
     2281 tctttcttgc tctccgtacc gctgtgccgg atgatgatgt actggtggtt cgccaacccc
     2341 atgcgctgca tgaagtcgtt accaagttcc gcccagtccg catccgtaaa ggtggcgctt
     2401 tcctctatcg aggggctgac ctcgaaacgt aggcagttgt tttttacgtt cggaaaatca
     2461 atgtgatacg gtttcatttc ctgcaccatt tccgcaccag tacacccata aagttcatgc
     2521 cgggctatct cggtggctac tgcctgcccg tttatctctt tggcgaggtc gtactccaat
     2581 gccgccacac catgtgatat gcttttccct ttccctatca tcgtgagagt atttttttga
     2641 gctctgtaat tagtgcccgg ttctcctcga acacttcccg gtactggcga ccaccgaagt
     2701 agttgttcag ccgttggagc gttcctttca actgggctat gtcccggaga agctgccgtt
     2761 cctcctcggt gtacctctcc cttgggcgcc ccccaaggga caaactccgg cagtattccg
     2821 atacgcttag actgcaccgg gctgcctgct ccgcaagtgc gtccttttca agttcggtac
     2881 accggaatgt aatcttttcg ttccgtctta gttccatgcc acaaaggtaa tcttaaaatc
     2941 tttttgagca aagcgagaaa agcaagaatt gtccgacaag gacacttctt gctatatata
     3001 cacatgccgc atgggaatac atccacgcca accgcccagc aaaaagcccc ggcgtgttag
     3061 aaaatccccc acagcctaac aaattctacc ccatttctac ccaaggggat tacacgccgc
     3121 agaagtcatc cgggaacatg tcttccagtt cgtccaaatc aatggtttct tcttcggaca
     3181 cctccaccca ttcaatgttt tctttccctc ttatcgcaca tgagtacatc tcggcggcgg
     3241 caagagaaga gaacacctcg tgcataggct cgccgttctc taaccagtaa acacaatatt
     3301 cgaccataac agttttatca tttatcgttg taatgcccct ctacctccaa gatgtagacc
     3361 tctaccactt cctcgtaaat gtcatagatt atccggtcat gggcggtaat gtgtcgagac
     3421 catgtaatat ccccaccgcc ccttaacgct tcgggatgcc caagcccagt cttagggtgc
     3481 tctaacaatt ctttgtagat tttcttatac ttcttgaaca aattggggtt tgatttcttc
     3541 catttggcaa tcaccttatc caccccgtcg gaaaccctaa ttgtgtacat catagactat
     3601 cgaaataagc gtcaatatcc tcactgcttt tgagggtaac acactttccg gatttgattt
     3661 cttcccttgc cttgtcaatc cttgcttgca gctccggggt tatcatcaaa tcttcacgac
     3721 caacttttac caaagcgtaa atctcgtttt tcctgcgaat tagtacctgc tcgccattgt
     3781 cagctttggt gaaagacgct gcgaggttgt tacggtattc tcttactgat aatgcttcca
     3841 tatctgtttg cttttaaatt cagcacaaag atagctatat ttcaataaaa tacaaacatt
     3901 ttgtacacaa acgtgtacac gccataaaaa cccgtttcca atcctaccgc ccgttggttg
     3961 gttttgcttt gctctttttc cctatcgttt ttctttttcc gacagtaaat caaccactta
     4021 gctctataaa ttccccttgt ctgttataag catcgtctgt aatatgctct atcacttctt
     4081 cgcaaacgcc cataaataaa gggattagaa catgtgtttc cccacacttt gggagtttag
     4141 tccccaca
//
