LOCUS       NZ_CP041121             1749 bp    DNA     circular CON 20-JUN-2024
DEFINITION  Escherichia coli strain ECCTRSRTH03 plasmid unnamed11, complete
            sequence.
ACCESSION   NZ_CP041121
VERSION     NZ_CP041121.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN07450616
            Assembly: GCF_002246595.2
KEYWORDS    RefSeq.
SOURCE      Escherichia coli
  ORGANISM  Escherichia coli
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Escherichia.
REFERENCE   1  (bases 1 to 1749)
  AUTHORS   Fouts,D., Sutton,G., Nguyen,K., White,R., D'Souza,R. and
            Thamlikitkul,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-JUN-2019) Bioinformatics, JCVI, 9605 Medical Center
            Drive, Suite 150, Rockville, MD 20850, USA
REFERENCE   2  (bases 1 to 1749)
  AUTHORS   Fouts,D., Sutton,G., Nguyen,K., White,R., D'Souza,R. and
            Thamlikitkul,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-JUN-2019) Bioinformatics, JCVI, 9605 Medical Center
            Drive, Suite 150, Rockville, MD 20850, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 23-MAY-2019
            Assembly Method                   :: Unicycler v. v0.4.7
            Assembly Name                     :: ECCTRSRTH03
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Reference-guided Assembly         :: NA
            Genome Coverage                   :: 150.12x
            Sequencing Technology :: Illumina NextSeq 500, Oxford Nanopore
            MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002246595.2-RS_2024_06_20
            Annotation Date                   :: 06/20/2024 03:02:23
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,934
            CDSs (total)                      :: 4,822
            Genes (coding)                    :: 4,583
            CDSs (with protein)               :: 4,583
            Genes (RNA)                       :: 112
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 78
            ncRNAs                            :: 12
            Pseudo Genes (total)              :: 239
            CDSs (without protein)            :: 239
            Pseudo Genes (ambiguous residues) :: 0 of 239
            Pseudo Genes (frameshifted)       :: 74 of 239
            Pseudo Genes (incomplete)         :: 168 of 239
            Pseudo Genes (internal stop)      :: 35 of 239
            Pseudo Genes (multiple problems)  :: 37 of 239
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP041121.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1749
                     /organism="Escherichia coli"
                     /mol_type="genomic DNA"
                     /strain="ECCTRSRTH03"
                     /isolation_source="Rectal swab"
                     /host="Swine"
                     /db_xref="taxon:562"
                     /plasmid="unnamed11"
                     /geo_loc_name="Thailand: Nakhon Pathom"
                     /lat_lon="13.8199 N 100.0622 E"
                     /collection_date="2016-08-01"
     gene            275..1264
                     /locus_tag="CI675_RS24780"
                     /old_locus_tag="CI675_0024780"
     CDS             275..1264
                     /locus_tag="CI675_RS24780"
                     /old_locus_tag="CI675_0024780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001529700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_039022372.1"
                     /translation="MKNPELQNLTDYSPSDAPWDAHRSVSDDVGGIYLLAAEYERYGAR
                     MASCGGLLRFGWSTLKETGETRLRLREAHFCRVRHCPVCQWRRSLMWQARFYQSLPRIV
                     ADYPDSRWMFLTLTVRNCAIGELGDTLSRMNTAFQRLKDRKEFRPVQGWIRTTEVTRGS
                     DGSAHPHFHTLMMVPPGMLNGKSYVKHARWVELWRECLRVSYDPNVDVRAVKPRKPKDG
                     ESLACATAELVRGAVAETLKYSTKPADMVADPEWFLELTRQTHKRRFVATGGALKDVLK
                     LDQETDADMVIGDDISEGDDDGSRIAFEWKIEVKKYRRSPTKDKTESE"
                     /name="protein rep"
     Typing          complement(993..1182)
                     /name="ColpVC"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="96.859"
                     /coverage="99.0"
                     /evalue="3.7200000000000003e-85"
ORIGIN
        1 tcgcgcgcgt tccttgtatt tatacttaag ggataactct ggcgttaaga ataagcctca
       61 gcccttgtgc cgcaagggtt tcagcgtgat ttgcctgaaa atgactttga agttattctg
      121 tcgggagtgg tcgcgttaaa agcgaccccc gcaacgacgg ccatcgttcg ggggcgtgac
      181 cacctgtagg aattctattt tgcgacagac aacacaggtg atacggcaat gataacacgt
      241 caagtgagcc atcgcccagt atggggcggt gcgcatgaaa aatcctgaac tccagaacct
      301 cacggactat tccccctcag atgcgccctg ggacgctcac agaagcgttt ctgacgacgt
      361 gggagggatt tacctgcttg cggccgaata tgagcgctac ggggcgcgta tggcctcctg
      421 cggcggttta ctgcgtttcg ggtggtctac cctcaaagaa accggagaaa cgcgcctgag
      481 gctgcgtgag gcgcatttct gccgtgtccg gcactgtcct gtctgccagt ggaggcgctc
      541 cctgatgtgg caagcccgtt tctaccagtc cctgccgcgt atcgtggcgg attaccccga
      601 ttcccgctgg atgttcctga ccctgaccgt gcgcaactgt gcgatcgggg agctgggcga
      661 tacgctgagc cggatgaaca cggctttcca gcggctgaag gatcgcaaag agttcagacc
      721 agttcaggga tggatccgca ccacggaagt cacccgcggc agtgacggca gcgcacaccc
      781 gcacttccac acactgatga tggttccgcc tggcatgctt aacgggaaga gttacgtcaa
      841 acatgcgcgc tgggttgagc tgtggcggga gtgccttcgg gtcagctacg atccgaatgt
      901 cgatgtccgg gcagtgaaac cccggaagcc gaaggacggc gaatcgctgg cctgcgcgac
      961 cgccgaactg gtgcgcggcg cggtggccga gaccctgaaa tattccacga agccggccga
     1021 catggtcgcc gatcctgaat ggttcctcga actgacccgc cagacgcaca agcgccgctt
     1081 tgtggcgacc ggcggcgcac tcaaagacgt attgaaactc gatcaggaaa ccgatgccga
     1141 catggtgatc ggggatgata tttccgaggg cgatgatgac ggttcccgca tcgcgttcga
     1201 gtggaaaatc gaggtcaaaa aataccggcg ttcgccgacg aaagataaaa ccgaatcaga
     1261 gtaaaaacac tgcgatgcag gatagggcaa acgccgcaaa atgacgtcat ccgacatcat
     1321 tccgccgcgt tcgcccagtg acctgcagtc ggctctgggg tgtcggggct gcgccctgac
     1381 ctggggtttt agattgcggc catcgtgatg gcggtaatac aaaacgcacg ggacaagatg
     1441 tgtttttgga gtaccgccga cacgcgacgg acagtccaaa atatcttggt cagggctgcg
     1501 ccccgacacc ctgccaacac ctcacgccgc cagattaaaa tctgccagcg ttcgccgttc
     1561 ctgaaatcgt caaacgctaa atcgtggggt cccgctggct tgccagtggg ttccgattta
     1621 gtgattgacg agcgcacccg taaaacactg ccgacaggtg gttgtgatca cgcagtgagc
     1681 gcaaccacct gataagcgtt tttggggttt gtggggtccg atttaacgtg gattttgggg
     1741 gcaaaaaaa
//
