LOCUS       NZ_CP041120             2137 bp    DNA     circular CON 20-JUN-2024
DEFINITION  Escherichia coli strain ECCTRSRTH03 plasmid unnamed10, complete
            sequence.
ACCESSION   NZ_CP041120
VERSION     NZ_CP041120.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN07450616
            Assembly: GCF_002246595.2
KEYWORDS    RefSeq.
SOURCE      Escherichia coli
  ORGANISM  Escherichia coli
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Escherichia.
REFERENCE   1  (bases 1 to 2137)
  AUTHORS   Fouts,D., Sutton,G., Nguyen,K., White,R., D'Souza,R. and
            Thamlikitkul,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-JUN-2019) Bioinformatics, JCVI, 9605 Medical Center
            Drive, Suite 150, Rockville, MD 20850, USA
REFERENCE   2  (bases 1 to 2137)
  AUTHORS   Fouts,D., Sutton,G., Nguyen,K., White,R., D'Souza,R. and
            Thamlikitkul,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-JUN-2019) Bioinformatics, JCVI, 9605 Medical Center
            Drive, Suite 150, Rockville, MD 20850, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 23-MAY-2019
            Assembly Method                   :: Unicycler v. v0.4.7
            Assembly Name                     :: ECCTRSRTH03
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Reference-guided Assembly         :: NA
            Genome Coverage                   :: 150.12x
            Sequencing Technology :: Illumina NextSeq 500, Oxford Nanopore
            MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002246595.2-RS_2024_06_20
            Annotation Date                   :: 06/20/2024 03:02:23
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,934
            CDSs (total)                      :: 4,822
            Genes (coding)                    :: 4,583
            CDSs (with protein)               :: 4,583
            Genes (RNA)                       :: 112
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 78
            ncRNAs                            :: 12
            Pseudo Genes (total)              :: 239
            CDSs (without protein)            :: 239
            Pseudo Genes (ambiguous residues) :: 0 of 239
            Pseudo Genes (frameshifted)       :: 74 of 239
            Pseudo Genes (incomplete)         :: 168 of 239
            Pseudo Genes (internal stop)      :: 35 of 239
            Pseudo Genes (multiple problems)  :: 37 of 239
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP041120.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2137
                     /organism="Escherichia coli"
                     /mol_type="genomic DNA"
                     /strain="ECCTRSRTH03"
                     /isolation_source="Rectal swab"
                     /host="Swine"
                     /db_xref="taxon:562"
                     /plasmid="unnamed10"
                     /geo_loc_name="Thailand: Nakhon Pathom"
                     /lat_lon="13.8199 N 100.0622 E"
                     /collection_date="2016-08-01"
     gene            complement(join(1878..2137,1..736))
                     /locus_tag="CI675_RS24775"
                     /old_locus_tag="CI675_0024775"
     CDS             complement(join(1878..2137,1..736))
                     /locus_tag="CI675_RS24775"
                     /old_locus_tag="CI675_0024775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020240588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_038989441.1"
                     /translation="MQNPKLKNLTDYSPDDKPWDVHKSQSDDVGGIYLRAAEFEAYAAR
                     MRDCGGLLRFGWSTLKDTGETRLRLREAHFCRVRHCPVCQWRRSLMWQARFYQSLPKIV
                     ADYPDARWMFLTLTVRNCAIEDLGDTLTAMNAAFQRMKVRKEFKSVQGWIRTTEVTRGR
                     DGSAHPHFHTLMMVPPGMLNGHDYVKHYRWVELWRDCLRVDYDPNVDVRAVKPRKPKDG
                     QTLACATAELVRGAVAETLKYSTKPADMVADPDWFLELTRQTHKRRFVATGGALKDVLK
                     LEQETDQDMVIGDDISDGEDDGSRLAFGWDSTPRKYVRLPERDKFKSDPD"
                     /name="protein rep"
     Typing          1968..2137
                     /name="ColpVC"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="83.626"
                     /coverage="87.0"
                     /evalue="3.09e-36"
ORIGIN
        1 ttgtcgaata tttcagggtt tcagcaacgg caccgcgcac cagttcagca gtggcacatg
       61 ccagagtctg gccatcttta ggcttgcggg gtttcactgc ccgaacatca acattaggat
      121 cgtaatcaac gcgcaggcag tcacgccaga gttcaaccca gcggtagtgc ttaacgtagt
      181 catgaccgtt cagcatccca ggaggaacca tcatcagggt gtgaaagtgg gggtgtgcag
      241 agccatcacg accgcgggta acttctgtgg tgcgaatcca tccctgtacg gatttaaatt
      301 ccttgcgaac cttcatgcgc tggaatgcgg cattcatggc agtaagcgtg tccccgagat
      361 cctcgatcgc acagttgcga acggtgagcg tgaggaacat ccagcgggca tcagggtaat
      421 cagcgacgat tttcggcaga gactgataaa aacgggcttg ccacatcagg gaacgcctcc
      481 actggcagac agggcagtga cgaacgcggc agaaatgcgc ctcacgaagc cgtaaacgcg
      541 tttctccggt gtctttaagg gtagaccagc caaaacgcag caagccgcca caatcgcgca
      601 tacgagccgc atacgcctca aattcagctg cacgcagata gataccgcca acatcatcag
      661 attgcgactt gtgaacgtcc cacggcttat cgtcgggact gtagtcagta aggttcttta
      721 gcttaggatt ctgcatagca cctgctccaa tatgggcagg cgctggaagg gtgtgttatc
      781 atttccgtat cacctgttgc gagtcgattt caaaccgtat ttagccaggt gatcgcgccc
      841 ctgaagtgtt ggtagcactt gcaggggttt ctcatatcat cgtgtcagta agtaaggtct
      901 tgggaaccac cccaagtaat caaaaattag ttcgcggaca cgatcacctg tcagaaatca
      961 tactcacaaa accattttcg agcaaattgg ctctcaggcc ttgcggcaca agggctggaa
     1021 gcgaatttga atcctagagt tatcccttaa gtataaatac aaggatttcg cccctttcag
     1081 ggccgaaaaa ccaaccccca aaagcagcat tcaggcactc aaacactcaa gcattcgtaa
     1141 gctcaaaaat taagcaaacc acgttaaatc gccccccctg agaaatgtca gattgagaca
     1201 aacgtgcagt attacattca ctgcacgcgg ctgtttccgt tgcaaatcgc aacaagagtc
     1261 cactattaaa cagagtggac cccgattccg aacggcgtgt gcctcctcgc agagctgcgg
     1321 gggcaatccc cgttcctcat cgcggccgca cgactttacc ccgcatactc ctgatggcgg
     1381 atttaaacga ataaggcata ccgagcaaaa cgaaaatacc cccacggcat cacctgtagg
     1441 gcagggctta cgcacctacc ccacaggcaa cgccttgaag ggggtaaaaa gcggctttac
     1501 agggcgatgg ctcaccatgt gaaccatcac ccatcacaag ggtatgaggg gtgcagtcgt
     1561 acaaccacta aatcggaacc ctaaagggat cccccgattt agaagttgac gattcgacgg
     1621 cggcgaacgc tgtcagattt aatattccat tgagcagagt gcgaataagg caggcgtaaa
     1681 gtggtcccac tttacatatc ctgcccgaat tctgccgttg attattcgtg tatgcgtgta
     1741 tgtatgcaga gtggaaatct cagggaaacc cgaaggaatg ccaaaggaaa tctgtgtacc
     1801 ggacaagatg tgtttttgga gtaccgccac acgcagcggc atccaaaaac aacctggtca
     1861 gggcaggccc cgacacccta atcaggatct gatttaaact tatcgcgttc aggcaaacgg
     1921 acgtattttc ttggcgtcga atcccagcca aaggcgaggc gtgaaccatc gtcttcacca
     1981 tcggaaatat catccccgat caccatgtcc tgatccgttt cctgctccag tttcagaacg
     2041 tctttcagag cgccaccggt cgcaacaaaa cggcgtttat gcgtctgccg ggtcagctct
     2101 aagaaccagt ccgggtcggc aaccatatca gccggct
//
