LOCUS       NZ_CP041109             2125 bp    DNA     circular CON 08-JAN-2024
DEFINITION  Klebsiella pneumoniae subsp. pneumoniae strain KPCTRSRTH07 plasmid
            unnamed10, complete sequence.
ACCESSION   NZ_CP041109
VERSION     NZ_CP041109.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN07450602
            Assembly: GCF_002248115.2
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae subsp. pneumoniae
  ORGANISM  Klebsiella pneumoniae subsp. pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 2125)
  AUTHORS   Fouts,D., Sutton,G., Nguyen,K., White,R., D'Souza,R. and
            Thamlikitkul,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-JUN-2019) Bioinformatics, JCVI, 9605 Medical Center
            Drive, Suite 150, Rockville, MD 20850, USA
REFERENCE   2  (bases 1 to 2125)
  AUTHORS   Fouts,D., Sutton,G., Nguyen,K., White,R., D'Souza,R. and
            Thamlikitkul,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-JUN-2019) Bioinformatics, JCVI, 9605 Medical Center
            Drive, Suite 150, Rockville, MD 20850, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 23-MAY-2019
            Assembly Method                   :: Unicycler v. v0.4.7
            Assembly Name                     :: KPCTRSRTH07
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Reference-guided Assembly         :: NA
            Genome Coverage                   :: 161.03x
            Sequencing Technology :: Illumina NextSeq 500, Oxford Nanopore
            MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 01/08/2024 05:19:52
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,806
            CDSs (total)                      :: 5,682
            Genes (coding)                    :: 5,535
            CDSs (with protein)               :: 5,535
            Genes (RNA)                       :: 124
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 90
            ncRNAs                            :: 9
            Pseudo Genes (total)              :: 147
            CDSs (without protein)            :: 147
            Pseudo Genes (ambiguous residues) :: 0 of 147
            Pseudo Genes (frameshifted)       :: 70 of 147
            Pseudo Genes (incomplete)         :: 80 of 147
            Pseudo Genes (internal stop)      :: 20 of 147
            Pseudo Genes (multiple problems)  :: 19 of 147
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP041109.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2125
                     /organism="Klebsiella pneumoniae subsp. pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="KPCTRSRTH07"
                     /isolation_source="Rectal swab"
                     /host="Swine"
                     /sub_species="pneumoniae"
                     /db_xref="taxon:72407"
                     /plasmid="unnamed10"
                     /geo_loc_name="Thailand: Nakhon Pathom"
                     /lat_lon="13.8199 N 100.0622 E"
                     /collection_date="2016-11-04"
     gene            160..1125
                     /locus_tag="CI661_RS29360"
                     /old_locus_tag="CI661_0029360"
     CDS             160..1125
                     /locus_tag="CI661_RS29360"
                     /old_locus_tag="CI661_0029360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012421200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_094327213.1"
                     /translation="MSEDKFLSDYSPRDAVWDTQRTLTDSVGGIYQTAAEFERYALRMA
                     SCSGLLRFGWSTIMETGETRLRLRSAQFCRVRHCPVCQWRRTLMWQARFYQALPKIVVD
                     YPSSRWLFLTLTVRNCEIGELGTVLTAMNAAFKRMEKRKELSPVQGWIRATEVTRGKDS
                     SAHPHFHCLLMVQPSWFKGKNYVKHERWVELWRDCLRVNYEPNIDIRAVKTKTGEVVAN
                     VAEQLQSAVAETLKYSVKPEDMANDPEWFLELTRQLHKRRFISTGGALKNVLQLDRETN
                     EDLVIADDVGDGTDDGKRTAFVWDSGKRRYKRAPEKDKSD"
                     /name="protein rep"
     gene            1129..1395
                     /locus_tag="CI661_RS29365"
                     /old_locus_tag="CI661_0029365"
     CDS             1129..1395
                     /locus_tag="CI661_RS29365"
                     /old_locus_tag="CI661_0029365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001024536.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_001024536.1"
                     /translation="MNINIEYLNGNKTIGLFFLRSEAVIPDRFKNLILLIDGLSFGTFG
                     FHPHEGFEDELILYIQKTNERVKTLFVKIDLNGIKFGFLRTHS"
                     /name="hypothetical protein"
     Typing          554..785
                     /name="Col(BS512)"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="99.571"
                     /coverage="100.0"
                     /evalue="9.53e-117"
ORIGIN
        1 cgtttttaat cggcgttggg gagtgcgtca acactcccca acatttcgaa tgtgtcacct
       61 cagcggcaaa ctctggtgac atgtactggc tcgcaatgca caggtacgtg atgaatatac
      121 cacatcaaat cacagcctgc ccagatcgga gcaggcttaa tgtcagaaga taaattcctt
      181 tcggactaca gcccccgtga tgcagtttgg gatacccagc gcacgcttac cgattctgtc
      241 gggggtatct accagactgc tgctgaattc gagcgctatg cactccgtat ggcctcctgt
      301 agcggtttgt tacgttttgg ttggtctacc atcatggaaa ccggagaaac gcgcctacgg
      361 cttcgtagtg cgcaattttg ccgtgtccgt cattgccctg tctgccagtg gagaagaacc
      421 ctcatgtggc aagcccgttt ttatcaggct ctaccgaaaa tcgttgtgga ttacccgtct
      481 tcccgatggt tgtttctgac gttaactgtc aggaactgcg agataggtga acttggaaca
      541 gtccttacag caatgaatgc ggcgtttaag cgaatggaaa agcgaaagga gctatcacct
      601 gttcaggggt ggatcagggc tacggaggtg acgcgaggta aggatagcag cgcacatccg
      661 cattttcact gtctgctgat ggtgcaacct tcttggttta aagggaagaa ctacgttaag
      721 cacgaacgtt gggtagaact ctggcgcgat tgcttgcggg tgaactatga gccgaatatc
      781 gatattcggg cagtaaaaac taagacaggt gaggttgtgg ccaacgttgc cgagcaactg
      841 caaagcgcgg ttgctgaaac gctgaaatac tccgttaaac cggaagatat ggcaaacgat
      901 cctgagtggt ttcttgagct gacgcggcag cttcacaagc gccgttttat ctcgaccggt
      961 ggggcgctaa aaaacgtcct ccagttggat cgagaaacca atgaggatct tgtcattgcc
     1021 gacgatgtag gggatggcac tgatgacggg aagcggacgg cgtttgtctg ggattcaggt
     1081 aaacggcgtt acaaacgcgc ccctgagaag gataaatcgg attaacgtat gaatattaat
     1141 attgaatacc tgaatggaaa taagactatt ggtttatttt ttttaagaag tgaagcggtg
     1201 attcctgaca ggtttaaaaa ccttattttg cttattgatg gattaagttt tggcacattt
     1261 ggttttcatc cgcacgaagg ttttgaggat gaattaattt tatatattca gaaaacaaac
     1321 gagagggtaa aaactctttt tgtgaaaata gatttaaacg gtatcaagtt tggattttta
     1381 agaacgcatt cttagttctg gaaaagagcc agcggcaggc tgaggtgata ggtacgagat
     1441 tgcatgcaat ctctagtgct ctgtctatcc tgcattatcc tcagcattat cctcagcatt
     1501 atcctcagca ttatcctcag cattatcctc agccttgcca actcgacacc aatgcaggat
     1561 agacaatccg atgtcaaatg ttaacactct gcgagtggta cattttcccc ggattatcgt
     1621 cctgagcctg ccgctggctc tctttctacc gcctcgcttt gctcgttgct caacgcctca
     1681 cagacacgga ttaaaatccg catccgttca ccgtttttta aagtccgtta aaagcatgat
     1741 gccatctccg agagttaatc tcgtcaaatg ctaaatcgtg ggggtcccct ttggggttcc
     1801 gatttagtga ttgacgacac caccgattaa aaaacttatg cggggtggat ggtttcacga
     1861 agtgaggcca tccacctgta agacagggtt ttgtttttat tccctgtttt ggtgatcggg
     1921 tgtgtggaaa aggttggggt aagccgttcg ggggtgcttg ttttgggggg ttaaaattgt
     1981 ggttattttt tgcgcaactc tcgcgcgtga tccttgtatt tatacttaag ggataaatgg
     2041 cggatatgaa atagtggttt agcccagtaa tgacgaggct ttgagtgggt tttgacaggt
     2101 caaagaaaat ggagcagaat tgagg
//
