LOCUS       NZ_CP041108             2461 bp    DNA     circular CON 08-JAN-2024
DEFINITION  Klebsiella pneumoniae subsp. pneumoniae strain KPCTRSRTH07 plasmid
            unnamed9, complete sequence.
ACCESSION   NZ_CP041108
VERSION     NZ_CP041108.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN07450602
            Assembly: GCF_002248115.2
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae subsp. pneumoniae
  ORGANISM  Klebsiella pneumoniae subsp. pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 2461)
  AUTHORS   Fouts,D., Sutton,G., Nguyen,K., White,R., D'Souza,R. and
            Thamlikitkul,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-JUN-2019) Bioinformatics, JCVI, 9605 Medical Center
            Drive, Suite 150, Rockville, MD 20850, USA
REFERENCE   2  (bases 1 to 2461)
  AUTHORS   Fouts,D., Sutton,G., Nguyen,K., White,R., D'Souza,R. and
            Thamlikitkul,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-JUN-2019) Bioinformatics, JCVI, 9605 Medical Center
            Drive, Suite 150, Rockville, MD 20850, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 23-MAY-2019
            Assembly Method                   :: Unicycler v. v0.4.7
            Assembly Name                     :: KPCTRSRTH07
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Reference-guided Assembly         :: NA
            Genome Coverage                   :: 161.03x
            Sequencing Technology :: Illumina NextSeq 500, Oxford Nanopore
            MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 01/08/2024 05:19:52
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,806
            CDSs (total)                      :: 5,682
            Genes (coding)                    :: 5,535
            CDSs (with protein)               :: 5,535
            Genes (RNA)                       :: 124
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 90
            ncRNAs                            :: 9
            Pseudo Genes (total)              :: 147
            CDSs (without protein)            :: 147
            Pseudo Genes (ambiguous residues) :: 0 of 147
            Pseudo Genes (frameshifted)       :: 70 of 147
            Pseudo Genes (incomplete)         :: 80 of 147
            Pseudo Genes (internal stop)      :: 20 of 147
            Pseudo Genes (multiple problems)  :: 19 of 147
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP041108.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2461
                     /organism="Klebsiella pneumoniae subsp. pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="KPCTRSRTH07"
                     /isolation_source="Rectal swab"
                     /host="Swine"
                     /sub_species="pneumoniae"
                     /db_xref="taxon:72407"
                     /plasmid="unnamed9"
                     /geo_loc_name="Thailand: Nakhon Pathom"
                     /lat_lon="13.8199 N 100.0622 E"
                     /collection_date="2016-11-04"
     gene            join(1716..2461,1..223)
                     /gene="mobV"
                     /locus_tag="CI661_RS29345"
                     /old_locus_tag="CI661_0029345"
     CDS             join(1716..2461,1..223)
                     /gene="mobV"
                     /locus_tag="CI661_RS29345"
                     /old_locus_tag="CI661_0029345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000024818.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /GO_process="GO:0006310 - DNA recombination [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobV family relaxase"
                     /protein_id="WP_000024818.1"
                     /translation="MANYAIMRCKKLTGMGSVASALQHCYRERETPNANAERTPENYCS
                     VSKSTDQAMGRVRELLPEKRRKDAVLAVEYVMTASPEWWKEATPRQQAEFFARSEQWLE
                     KKYGKDRVVAAVVHRDEATPHLSAFVVPLTQDGRLSAKEFIGGRSKMREDQSTYAESVK
                     KLGLERGIEGSRATHQTVQHYYESINRGTRSQVSISPEALEPRVLRKGIFTKDVEDQAA
                     IAKRLSHAVNDGFAGTIAMASQSAQNAKRARELQKTMDAQQKRLQSVTEPFKGLSREQM
                     TEILMMAQRFKQQNQEKEKQQRIEREKQRQTRSRGMGGMER"
                     /name="mobV"
     gene            complement(322..552)
                     /locus_tag="CI661_RS29350"
                     /old_locus_tag="CI661_0029350"
     CDS             complement(322..552)
                     /locus_tag="CI661_RS29350"
                     /old_locus_tag="CI661_0029350"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_029488008.1"
                     /translation="MMNAEDKLFKKVDRLMLHDSLKKNEVLTVWERTFLSSTYSIYRRT
                     SGNEFSTKGLSPKQKSTAFSILKKYNYHLMD"
                     /name="hypothetical protein"
     gene            complement(539..1021)
                     /locus_tag="CI661_RS29355"
                     /old_locus_tag="CI661_0029355"
     CDS             complement(539..1021)
                     /locus_tag="CI661_RS29355"
                     /old_locus_tag="CI661_0029355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001565850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_202974839.1"
                     /translation="MNTKKISKLERHTYMDESGEIKQDSKIETFSIPAEPPYVKLYIAD
                     IAMIHGLSKSQNDVLLQLAMLIGWDGFVSVSKTRFEKTIQPRVHIEYQTFKNIIAALVD
                     KQIFLRAGRGELEANPFLFARGDWPSIYERRKKIELRISYDSNGRTVQTTVTDDER"
                     /name="hypothetical protein"
     Typing          1708..2459
                     /name="MOBV"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="94.821"
                     /coverage="96.0"
                     /evalue="1.44e-171"
ORIGIN
        1 aaaaagagcg cgtgagctac agaagactat ggatgcgcag cagaaacgcc tacagagcgt
       61 tacagagcct tttaaggggc tttccagaga gcagatgacc gaaatcctga tgatggctca
      121 gcggtttaag cagcaaaacc aggaaaagga aaaacagcag cgtattgaac gtgaaaaaca
      181 gcgacagacg cgatcgcgtg gcatgggtgg tatggagcgt tagttttgat gcgatgcagg
      241 atagggctaa cgccgcaaag tgacgtcatt tgcggcattc cagagatcag gttctgccgc
      301 cctgtataac gctgagtcca gctaatccat cagatggtaa ttgtattttt tcaaaataga
      361 aaaagcggtg cttttttgtt ttggtgacaa tcccttagtt gaaaattcat taccgcttgt
      421 tctgcgatat atgctgtatg tactacttaa aaaagtacgc tcccaaacag tcaaaacctc
      481 attctttttt agagagtcat gcagcattaa tctatctact tttttgaata gcttatcttc
      541 agcgttcatc atccgttacc gttgtttgta ctgtccttcc attggaatca taactgattc
      601 ttaactctat tttttttctt ctttcgtaaa ttgaaggcca gtctccccga gcaaaaagaa
      661 acggattggc ttcaagctct ccccgccctg cccggagaaa gatttgttta tcaacaaggg
      721 cagcgattat gtttttaaac gtctgatatt caatatgaac cctaggttgt atggtcttct
      781 caaatctagt ttttgataca gatacaaagc catcccatcc aatcagcatt gccaactgca
      841 aaagcacatc attttgagat tttgacaaac catgaatcat cgcaatgtct gcgatgtaaa
      901 gcttgacgta gggcggttca gccgggatag aaaaagtctc gatcttagag tcttgtttaa
      961 tctctccgct ctcgtccatg tatgtatgcc gttcaagctt agaaatcttt tttgtattca
     1021 ctctagcccc atgtatcagc atgtttttag tactcacatt taagtactaa agatgccggt
     1081 agtcaagtac cttacctaaa gtacgattag tacttgaggt gagtacgatt agtacttgag
     1141 gtaagtacga ttagtacttg aggtaagtac gattagtact tgaggtgagt acgattcttc
     1201 tctctagccc ttggtgtgcg cgggttcccg tatctatatc tatatattaa gggggaaaat
     1261 aaaggctgaa aaacgccatt tttaaacatc gaaaaacgag cttttttgag tctggagcgt
     1321 acggatttct atgtccgggg agtggaaatt ccgcttcctc gaacggacag actcgcggcg
     1381 atgccgctcc ctaatccgtt cttgcggcga gcggttcctg ctctttcaaa aacgatattc
     1441 attgcctgat ttcgtcaagg gcgagcgtag cgagtgccat ttacccttga cgactcaccg
     1501 gataaaacag gcttggcagt ggtgggaggt gacgcggagc gacgccttcc acctgccaga
     1561 ccgccgttga ttttgacctt tggaagcgca gcttcccgaa cgattttgcg aagcaaagtc
     1621 tagtgagtta cactatcatc ttgatagtgg cccgccggag gtatcgcaat gcgctccccc
     1681 gcctggctga atgaatgccg gaatcagggg ggaacatggc gaactacgcg ataatgcgct
     1741 gcaaaaagct gacggggatg gggagcgtgg ccagcgcgtt gcagcactgc taccgagagc
     1801 gtgagacgcc gaacgctaac gctgaacgga caccagaaaa ctactgctct gtgtccaaat
     1861 caacggatca ggcaatgggg cgtgtgcggg agctgctgcc ggaaaaacgc cgtaaagatg
     1921 cggtactggc cgttgaatac gttatgacag caagccctga gtggtggaaa gaggccacac
     1981 cacggcagca ggcggagttt ttcgcccgct ctgagcaatg gctggagaag aaatacggga
     2041 aggatcgtgt tgtggcggcg gtggttcacc gggacgaggc caccccgcac ctgtctgcgt
     2101 tcgtggtgcc attgacgcag gatggacggc tgtccgcgaa agagtttatt ggcgggcggt
     2161 caaagatgcg tgaagatcag agcacctacg ctgaatcagt aaaaaaactg ggtcttgagc
     2221 gcggcatcga gggaagccgc gccacgcatc agacagttca gcactactac gaatcgataa
     2281 accgtggcac ccgtagccag gtatcgatct cgccggaggc gctggagccg cgtgtattgc
     2341 ggaagggcat tttcaccaaa gacgtggaag atcaggcagc catagccaaa cgtctaagcc
     2401 acgcagtgaa cgatggcttt gcaggaacca tcgctatggc ctctcagagc gcccagaacg
     2461 c
//
