LOCUS       NZ_CP041107             2675 bp    DNA     circular CON 08-JAN-2024
DEFINITION  Klebsiella pneumoniae subsp. pneumoniae strain KPCTRSRTH07 plasmid
            unnamed8, complete sequence.
ACCESSION   NZ_CP041107
VERSION     NZ_CP041107.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN07450602
            Assembly: GCF_002248115.2
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae subsp. pneumoniae
  ORGANISM  Klebsiella pneumoniae subsp. pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 2675)
  AUTHORS   Fouts,D., Sutton,G., Nguyen,K., White,R., D'Souza,R. and
            Thamlikitkul,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-JUN-2019) Bioinformatics, JCVI, 9605 Medical Center
            Drive, Suite 150, Rockville, MD 20850, USA
REFERENCE   2  (bases 1 to 2675)
  AUTHORS   Fouts,D., Sutton,G., Nguyen,K., White,R., D'Souza,R. and
            Thamlikitkul,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-JUN-2019) Bioinformatics, JCVI, 9605 Medical Center
            Drive, Suite 150, Rockville, MD 20850, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 23-MAY-2019
            Assembly Method                   :: Unicycler v. v0.4.7
            Assembly Name                     :: KPCTRSRTH07
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Reference-guided Assembly         :: NA
            Genome Coverage                   :: 161.03x
            Sequencing Technology :: Illumina NextSeq 500, Oxford Nanopore
            MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 01/08/2024 05:19:52
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,806
            CDSs (total)                      :: 5,682
            Genes (coding)                    :: 5,535
            CDSs (with protein)               :: 5,535
            Genes (RNA)                       :: 124
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 90
            ncRNAs                            :: 9
            Pseudo Genes (total)              :: 147
            CDSs (without protein)            :: 147
            Pseudo Genes (ambiguous residues) :: 0 of 147
            Pseudo Genes (frameshifted)       :: 70 of 147
            Pseudo Genes (incomplete)         :: 80 of 147
            Pseudo Genes (internal stop)      :: 20 of 147
            Pseudo Genes (multiple problems)  :: 19 of 147
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP041107.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2675
                     /organism="Klebsiella pneumoniae subsp. pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="KPCTRSRTH07"
                     /isolation_source="Rectal swab"
                     /host="Swine"
                     /sub_species="pneumoniae"
                     /db_xref="taxon:72407"
                     /plasmid="unnamed8"
                     /geo_loc_name="Thailand: Nakhon Pathom"
                     /lat_lon="13.8199 N 100.0622 E"
                     /collection_date="2016-11-04"
     gene            complement(join(2249..2675,1..857))
                     /locus_tag="CI661_RS29335"
                     /old_locus_tag="CI661_0029335"
     CDS             complement(join(2249..2675,1..857))
                     /locus_tag="CI661_RS29335"
                     /old_locus_tag="CI661_0029335"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="plasmid recombination protein"
                     /protein_id="WP_228715576.1"
                     /translation="MKSQFMHVELYSREEPAKKTINKSKNLNHQSDVRTTTVSGVLSEM
                     KREEGFTSHLESIHAPDVLYGSISDLERSIERYEAEFKTTDKNGKEKKLRKDACILLAG
                     VVSLDRADEEIWEEYKKSSIEYLKNKYGENLKCVVEHTDETNPHFHFYVVGNQKQDLNL
                     LHDGKLAVSKLAKEDKKKLHQTVYTEAMIKFQDDFYTKVSNKFGLSRTGEEPRERYKSR
                     PDYLRFKKRQETALNILSDIEEFEADIKEKARKTGYSKGAKQFQNKTWVIKVGEAIKLL
                     GKEHKAELDQKEKELEKIKKEKTEIETELNLKKEELSNAYSQRNEASRKNSVYIDKVNA
                     LKKENKLLLPYKDQFDLKLQQEKEPLQAEVKELTSENTNLKNENSELKKENLDFKEFIL
                     GVKNYYGSKFQEWYEEVFNPKTKTKPKF"
                     /name="plasmid recombination protein"
     gene            complement(1101..1700)
                     /locus_tag="CI661_RS29340"
                     /old_locus_tag="CI661_0029340"
     CDS             complement(1101..1700)
                     /locus_tag="CI661_RS29340"
                     /old_locus_tag="CI661_0029340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019704520.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="WP_094327210.1"
                     /translation="MAKAKVLIDDTEEAIIKNALDVDDMNEVNINVTRKKKTGFLGTYS
                     IVFHDSVKTLSKMNLKPNAYKIVMYLFGIIEMGNILVNFSQKKIADDLGLQPSNVSRAF
                     KELFEKKVLIKDSEDGHVYLNSNLCTMGVPKNFDQKRMKSLQKSNIETEDFKNQINLFT
                     PTNTTKIKTNDKKVIKKKEKENVLEFPMQNDWVDIE"
                     /name="helix-turn-helix domain-containing protein"
ORIGIN
        1 ttatgctctt ttccaagtaa tttaattgcc tcaccaactt taattaccca tgttttattt
       61 tgaaattgtt ttgcaccttt actatatcca gttttccttg ctttttcttt aatatcagct
      121 tcaaattctt ctatatcaga caatatattt aatgctgttt cttgtctttt tttaaatctc
      181 aagtaatcag ggcgggattt atagcgttct cgcggctcct cgcccgttct gctcaatcca
      241 aatttattag atacctttgt ataaaaatca tcttgaaatt tgatcatagc ttctgtgtag
      301 actgtttgat gtaatttttt cttatcttct tttgctaatt tagatactgc gagctttcca
      361 tcatgaagca aatttaaatc ttgtttttga ttaccgacca cataaaagtg aaaatgtggg
      421 tttgtttcgt ctgtatgctc aacaacacat tttaaatttt caccatattt atttttcaaa
      481 tattcaatag atgatttctt gtattcttcc caaatttctt catctgctcg atctagagaa
      541 accacaccag caagcaagat gcatgcatct ttgcgtagct tcttctcttt gccgttttta
      601 tcagtagtct taaattcagc ctcgtaacgc tctatagagc gttctagatc gcttatagag
      661 ccatacagca catcaggtgc atgtatgctc tctaaatgtg atgtaaaacc ttcttccctt
      721 ttcatttctg acaacacacc ggaaacggtt gttgttctaa catcagattg atgatttaga
      781 tttttacttt tatttattgt cttttttgct ggttcttctc tgctgtagag ttctacatgc
      841 ataaattgtg atttcatttt aaattctcct atattttaat ttcccttata tatgtaatta
      901 acagttattg tttttctgtc aatagctata ggaaccgact atatctatta cgctagcata
      961 tttcatatgc tgctccatag atgcggccct acggggttaa agtcaacttc aaaacaaaaa
     1021 agcaaatccc taaaccttgc aaattttata tttgcgaggt ttagggattc agcaaacgaa
     1081 gtgcggtagt gttagtttta ctattcaata tcaacccaat cattttgcat tggaaactct
     1141 aaaacgtttt ctttttcttt tttcttgata actttcttat cattggtttt tatttttgtt
     1201 gtatttgtag gagtaaataa attgatctga tttttaaaat cttcagtttc aatatttgat
     1261 ttttgtaaac ttttcattct cttttgatca aaatttttcg gaacacccat agtgcataga
     1321 tttgaattca agtaaacgtg tccgtcttcg ctatctttga ttaaaacttt tttttcaaaa
     1381 agttctttga aagctcttga tacgtttgaa ggctgcaaac ctagatcatc agcaatcttt
     1441 ttctgtgaga agttaactaa aatattaccc atctctatta tgccaaataa gtacattaca
     1501 atcttatatg cattaggctt taagttcatt ttagatagtg ttttcacaga gtcatgaaaa
     1561 actattgaat aagttcctaa aaacccagtt ttcttctttc tcgtgacgtt aatgtttact
     1621 tcattcatat catcaacatc taatgcattt tttattattg cttcttctgt atcgtctatt
     1681 aaaacttttg cttttgccat ttttatattc ctttttgtag taaaaataat aatctatgtt
     1741 gcatttataa ccgatctaaa tgcaatgtca atatcaaaac gataagaaag ttatcgtttc
     1801 aacatcaaat catatcaatg cacctgtatg caaaattatg attttcataa gtctgattat
     1861 gattttcata attttgcatt atgattttca taatcgaaaa ttatgatttt cataattttt
     1921 tttttggtaa agtgttgata tataaggctt taaatggtgc ttaagaagta agaaaataag
     1981 aaagaagaaa ccgtaacttc aactgcctta ccgcctcccc ttcgggtcgt tggacaaccg
     2041 ctcaaaccac agaaccagag gttctgcagt tttcacggtt cacggtttaa gtattttttc
     2101 tttataagtt attgatattt aaaggttact aactgcgtgc aaactacttt tttttgggat
     2161 aaatcccagc tatgacagct aaacgctgtc aggccgcttc tggtggtgtc tcatacacca
     2221 cataggcggc aaatatgaaa atattcaatt aaaatttggg ttttgttttt gtttttgggt
     2281 tgaatacttc ctcgtaccat tcctgaaatt tagatccata gtaattttta acacccaaaa
     2341 taaattcttt gaaatctaaa ttttcttttt tcagttctga attctcattt ttcaaattgg
     2401 tattttcaga agtcaactct ttgacttctg cttgtaatgg ctctttttcc tgctgtaatt
     2461 tcaaatcaaa ttgatctttg tatggaagta ataatttatt ttcttttttt agagcgttta
     2521 ctttatcaat ataaacgctg ttttttctcg atgcttcatt tctttgacta tatgcattag
     2581 ataattcttc ttttttcaaa ttaagctcag tttcaatttc tgttttttct ttttttattt
     2641 tttctaactc tttttctttt tgatctaatt ctgct
//
