LOCUS       NZ_CP041088             4052 bp    DNA     circular CON 08-JAN-2024
DEFINITION  Klebsiella pneumoniae strain Kp202 plasmid pKp202_6, complete
            sequence.
ACCESSION   NZ_CP041088
VERSION     NZ_CP041088.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN12082929
            Assembly: GCF_006459145.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 4052)
  AUTHORS   Chen,L.
  TITLE     Genomic sequencing of K. pneumoniae strain Kp202
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4052)
  AUTHORS   Chen,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-JUN-2019) HMH-CDI, Hackensack-Meridian Health Center
            for Discovery and Innovation, 340 Kingsland Street, Building 102,
            Nutley, NJ 07110, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 2019
            Assembly Method                   :: Unicycler v. 0.4.8
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 150.0x
            Sequencing Technology :: Illumina HiSeq; Oxford Nanopore MiniION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 01/08/2024 05:17:17
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,931
            CDSs (total)                      :: 5,813
            Genes (coding)                    :: 5,633
            CDSs (with protein)               :: 5,633
            Genes (RNA)                       :: 118
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 84
            ncRNAs                            :: 9
            Pseudo Genes (total)              :: 180
            CDSs (without protein)            :: 180
            Pseudo Genes (ambiguous residues) :: 0 of 180
            Pseudo Genes (frameshifted)       :: 71 of 180
            Pseudo Genes (incomplete)         :: 104 of 180
            Pseudo Genes (internal stop)      :: 29 of 180
            Pseudo Genes (multiple problems)  :: 20 of 180
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP041088.1.
            Bacteria and source DNA available from HMH-CDI.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4052
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="Kp202"
                     /db_xref="taxon:573"
                     /plasmid="pKp202_6"
                     /collected_by="CDI"
     gene            complement(join(3767..4052,1..35))
                     /locus_tag="FJV42_RS29915"
                     /old_locus_tag="FJV42_29910"
     CDS             complement(join(3767..4052,1..35))
                     /locus_tag="FJV42_RS29915"
                     /old_locus_tag="FJV42_29910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000957083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="WP_055318048.1"
                     /translation="MLTMWVTEDEHRRLLERCDGRQLAAWMRQSCLDEKPARACRLPSI
                     SPALLRQLAGMGNNLNQIARKVNAVGAGHDRVQIVAALMAIDAGLERLRHAVLEKGGDD
                     DR"
                     /name="MobC family plasmid mobilization relaxosome protein"
     gene            1422..1880
                     /locus_tag="FJV42_RS29935"
                     /old_locus_tag="FJV42_29930"
     CDS             1422..1880
                     /locus_tag="FJV42_RS29935"
                     /old_locus_tag="FJV42_29930"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_016245712.1"
                     /translation="MIETTLLAVLTGALSNLTSDAIKGIIGKLASKHPEVEQQASLLET
                     PLPFDEVDKLFSQMQGAIQAAAANGEIQLDGAELKALSGIKFDHQAGTVLINGSQVQAS
                     ILVTGGGQHATGKTIIQGDTTMTSQGTSIKMSGGAQIVMTGGARIIQN"
                     /name="hypothetical protein"
     gene            complement(2388..2600)
                     /locus_tag="FJV42_RS29940"
                     /old_locus_tag="FJV42_29935"
     CDS             complement(2388..2600)
                     /locus_tag="FJV42_RS29940"
                     /old_locus_tag="FJV42_29935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000137423.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="WP_000137423.1"
                     /translation="MTELEKQLLTALEQLHQDYSQRLDEWESAFAEWQKMSGLMQRENA
                     ALNERVTRLSQQVANLSRQLQRLSQ"
                     /name="MbeD family mobilization/exclusion protein"
     gene            complement(2604..3089)
                     /locus_tag="FJV42_RS29945"
                     /old_locus_tag="FJV42_29940"
     CDS             complement(2604..3089)
                     /locus_tag="FJV42_RS29945"
                     /old_locus_tag="FJV42_29940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001749519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeB family mobilization protein"
                     /protein_id="WP_055314654.1"
                     /translation="MSSLLALAKDLEQQSKAQQQSTGEMLKAAFSEHEKSVKAELSASA
                     KRISDAISAHEQGMTAAMQSNRLSVLRMVGRTWLTITLVSVLLIAMSGSILWWQGQQIT
                     GNYQTIRAQERTQAMLSEKNHGVQLSLCGEKKLSCVKVNPKAGAYGEEGNWMVLERK"
                     /name="MbeB family mobilization protein"
     gene            complement(<3127..3804)
                     /locus_tag="FJV42_RS31130"
                     /old_locus_tag="FJV42_29945"
                     /pseudo=""
     CDS             complement(<3127..3804)
                     /locus_tag="FJV42_RS31130"
                     /old_locus_tag="FJV42_29945"
                     /inference="COORDINATES: protein motif:HMM:NF015397.4"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     Typing          complement(144..323)
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="93.407"
                     /coverage="83.0"
                     /evalue="1.57e-69"
     Typing          300..786
                     /name="ColRNAI_rep_cluster_1987"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="88.235"
                     /coverage="93.0"
                     /evalue="5.96e-162"
     Typing          complement(2273..3777)
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="94.223"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 cggtgttcgt cttccgtcac ccacatcgtg agcatcttgt tgcgtttgtc tgccagagta
       61 gcctcctgat aacaccggga cgggcgggaa atgtttcccg gtcggcacgg tgttggacaa
      121 gccgcaggcg cgtcagtggc ttttagcggg tttcggggcg cagccctgaa ccagtcacgt
      181 agcgctagcg gagtgtatac tggctaaata tgttacggcg gagtggtaat gtatgaaagt
      241 gcttcatgtg ggaaggggaa aatgtggctg acgggcgtaa gtgcaacatg ctggtaaagg
      301 tgaaatgacg cctcctcgct cactcagtcg ctgcgctcct gccgtgagac tgcggcgggc
      361 gttaccagct cacagatgac gggatacgca agcagcgctc aaatcaggag aagccgggaa
      421 gaggatgcgg cgttgccgtt tttccatagg ctccgccccc ctgacgagta tcataaaatc
      481 tgacgctcaa atcagtggtg gcgaaacccg acaggactat aaagatccca ggcgtttccc
      541 cctggtagct ccctcgtgcg ctctcctgtt cctgccattc ggtttaccgg tgtcattccg
      601 ctgttatggc cgcgtttgtc tcattccacg cctgacactc agttccgggt aggcagttcg
      661 ctccaagctg gactgtatgc acgatccccc cgttcagtcc gactaccacg ctcttttcgg
      721 taactatcgt cttgagtcca acccgaaaag gcacgacaaa tcgccattgg cagtagccac
      781 tggtaaacag gatgtgcgag agatgtattc agagttcttg aagtggtggc cttactgcgg
      841 ctacactgga aggacagctt tggtgacatg tctcgcacaa gactgttacc acggttagta
      901 aatctgccag gattaactaa ccttcgaaaa accacctgcc agggtggttt tttcgtttac
      961 agagcaaaag actacgctca gaaagagatt atctcaagaa gatcatctct ttctcttact
     1021 caagtcaaag caaaaaaaca ccactccatc acaaactcag gttatagtcg gtatgcaact
     1081 aataacactg taatttctgt gcaaaatcga ggttatgcat atgcaaatca acatcaactg
     1141 caagagtatc ccaacatctt tcgatgttgt ctgctcgaat tgtgaatgga ccggcgtggc
     1201 tacattagat tatccggaaa acgtaaaaac cctatctgtc ggaggagaaa taaatttcac
     1261 tcataatgac gagacgccaa aatgtccaca atgtagcgtt ggatatatat atggtaaaag
     1321 tggcacttat aaacgtaata gtgcaactaa ccatatggac agaatcggag attataaaga
     1381 gtaaataata cgcatcacag caatctaacg agggaaatat aatgattgaa accacactac
     1441 ttgccgttct cactggcgca ttaagcaatc ttacttctga tgcaatcaaa ggcatcatag
     1501 ggaagttagc aagtaaacat cctgaagttg aacaacaagc ctcactgctt gaaacaccat
     1561 taccttttga cgaagttgat aaattatttt ctcagatgca gggggccatt caggctgcag
     1621 cagccaatgg tgaaattcag ctagatggag ctgaattaaa agcattgagc ggaataaaat
     1681 ttgatcacca agccggaact gttttgataa atggatctca agtacaagcg tcaattttag
     1741 tcactggtgg aggtcaacat gctactggaa aaacgatcat acaaggtgat acgacaatga
     1801 ctagccaggg tacaagtata aaaatgtcag gtggtgctca aatagtaatg actggtggag
     1861 cccgaatcat tcagaactaa tatgatttac cataacatct cttgcccgca ccgctccgga
     1921 catgttcgtc acaaacgggg cggcagtcag gtaaaaccgg caacaaacca cccgatacac
     1981 cgccccgttc gtgacagata aattttaccc ggctgcatgg tcatgcagcc agatgcatac
     2041 ggtctgattt caggccagaa tctggatgaa cgccttaaaa acaggaaaat gcttctccag
     2101 ccagtcccag atctccagcg ccatgtacag gcagttcagc accgtctcaa tcacgttaaa
     2161 cagtctcata atccctccgt tgtatacgcc gtgatgtttt catcacgacc gtatttagcg
     2221 ggaaatttat gagcccttct tcgtggggtt tgtcactggt gaagcctgtc agcccagcgt
     2281 cggaccgtta tagctccgct gacgggaacg ggcttccgcc agctcttttt cgtgctgtcg
     2341 ctgctcgtat gcccgttcgg cggccaccgc catttcatgc cgctgcacta ctggctcaaa
     2401 cgctgtaact gcctgctcaa gttcgccacc tgctgactca agcgcgtgac gcgctcgttc
     2461 agcgccgcgt tctcccgttg cataagacca gacatcttct gccattccgc gaaggcgctc
     2521 tcccactcgt ccagcctttg cgagtagtcc tgatgtagct gctctaatgc ggtcagcaac
     2581 tgtttttcca gttccgtcat gggctatttc ctctccagta ccatccagtt cccttcctcc
     2641 ccgtaagctc ccgctttcgg gttcactttg acgcaggaca gtttcttctc cccgcagagc
     2701 gacagctgaa cgccgtggtt tttctccgac aacatggcct gcgtccgctc ctgcgcccgg
     2761 atagtctggt aattcccggt gatctgctgc ccctgccacc acagaatgct cccgctcatg
     2821 gcgatcagca gtaccgagac cagggtgatg gtcagccacg tccggccgac catacgcagc
     2881 acgctcaggc ggttcgactg catcgccgcg gtcataccct gctcgtgggc gctgatggcg
     2941 tcgctgattc tcttcgcgct tgcgctcagt tccgctttta cagatttctc gtgctcgctg
     3001 aatgcggctt tcagcatctc gccggtactc tgctgctgcg ctttcgattg ctgctccaag
     3061 tccttcgcca gcgctaaaag actgctcata aatggctccc ttcagtcgga tgtttcgccc
     3121 cccgtccggg tcggcaatgc tgatactgtt ttttgtagtg cggaccacct caaaacctgc
     3181 cgctgtgagc gcacctgtga cgtcctcgcg agttttgagc tccccggatg aggctaaggc
     3241 cagcaaccca cgtgtaatcg cctgagcggc ttccagcttc gtttccggca gtgcggacgg
     3301 cgtaaccagt aaccgccggt tctccggggc gtttggatca tgcagtccca gtctgccgtt
     3361 caccacggtc tgccaggcat cgatgcgcgg ccggtcggcg cgatcgtaat acggctgcag
     3421 gcgtttcccg gtcagcagtt cagtgttggg gatcaggaaa ttcagctcca gccgcccctt
     3481 gtcggtgtgc tccacccaca gaatgctgta ctggtcttta tcgagcccgg gcatcagaac
     3541 ccgctcaaag ctggccatga tctgctcccg ctgcccgggc agcagttcag cctccgcgaa
     3601 cgacagcacg ccggaggtgt actttttcgc atacggcgag gcatcgataa gctcccggac
     3661 ttcctccggt tttccctgca gcacggtcgc cccctcgcgc tgccggtctt ttcccagcag
     3721 gtaatccacc ggaccggcac caccaccgcg cccccgggga tgaaatttaa cgatcatcat
     3781 cccccccttt ttccagcacc gcatgccgca gccgctccag tcccgcgtct attgccatca
     3841 gggcggccac aatctgcacc cgatcatgac cggcaccaac ggcattcact ttccgggcga
     3901 tctggttcag gttgttaccc ataccggcaa gctggcgcag cagcgccggc gatattgacg
     3961 gcagtctgca ggcacgcgcc ggcttctcat cgaggcagga ctgacgcatc cacgccgcca
     4021 gctgcctgcc gtcgcaccgc tcgagcagcc gc
//
