LOCUS       NZ_CP041087             5359 bp    DNA     circular CON 08-JAN-2024
DEFINITION  Klebsiella pneumoniae strain Kp202 plasmid pKp202_5, complete
            sequence.
ACCESSION   NZ_CP041087
VERSION     NZ_CP041087.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN12082929
            Assembly: GCF_006459145.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 5359)
  AUTHORS   Chen,L.
  TITLE     Genomic sequencing of K. pneumoniae strain Kp202
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5359)
  AUTHORS   Chen,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-JUN-2019) HMH-CDI, Hackensack-Meridian Health Center
            for Discovery and Innovation, 340 Kingsland Street, Building 102,
            Nutley, NJ 07110, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 2019
            Assembly Method                   :: Unicycler v. 0.4.8
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 150.0x
            Sequencing Technology :: Illumina HiSeq; Oxford Nanopore MiniION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 01/08/2024 05:17:17
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,931
            CDSs (total)                      :: 5,813
            Genes (coding)                    :: 5,633
            CDSs (with protein)               :: 5,633
            Genes (RNA)                       :: 118
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 84
            ncRNAs                            :: 9
            Pseudo Genes (total)              :: 180
            CDSs (without protein)            :: 180
            Pseudo Genes (ambiguous residues) :: 0 of 180
            Pseudo Genes (frameshifted)       :: 71 of 180
            Pseudo Genes (incomplete)         :: 104 of 180
            Pseudo Genes (internal stop)      :: 29 of 180
            Pseudo Genes (multiple problems)  :: 20 of 180
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP041087.1.
            Bacteria and source DNA available from HMH-CDI.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..5359
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="Kp202"
                     /db_xref="taxon:573"
                     /plasmid="pKp202_5"
                     /collected_by="CDI"
     gene            join(5325..5359,1..178)
                     /locus_tag="FJV42_RS29860"
                     /old_locus_tag="FJV42_29855"
     CDS             join(5325..5359,1..178)
                     /locus_tag="FJV42_RS29860"
                     /old_locus_tag="FJV42_29855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000137423.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="WP_000137423.1"
                     /translation="MTELEKQLLTALEQLHQDYSQRLDEWESAFAEWQKMSGLMQRENA
                     ALNERVTRLSQQVANLSRQLQRLSQ"
                     /name="MbeD family mobilization/exclusion protein"
     gene            complement(728..991)
                     /locus_tag="FJV42_RS29875"
                     /old_locus_tag="FJV42_29870"
     CDS             complement(728..991)
                     /locus_tag="FJV42_RS29875"
                     /old_locus_tag="FJV42_29870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010891192.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_054175658.1"
                     /translation="MAAYTSETEKFLQSVSSDQTWWKSRYNPGDSVPHSGIYRCTVCGK
                     EITSNGSDPFPPQNHHQHSQQQAIKWQLIVRTDTKGDRFGIK"
                     /name="hypothetical protein"
     gene            complement(1409..1825)
                     /locus_tag="FJV42_RS29880"
                     /old_locus_tag="FJV42_29875"
     CDS             complement(1409..1825)
                     /locus_tag="FJV42_RS29880"
                     /old_locus_tag="FJV42_29875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001283459.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="WP_032419562.1"
                     /translation="MSDQKNNLDIQKQTLESKWGKEALSMGWSAIPTSLFFLQGALNMT
                     PTTFNVLLHLIIHWWKPYDWPHPSQESIAVRMGVSSRTVQRSLQELENYGLLTKIRTSK
                     DNPKYKGRNIYDMSLLVKSLNILTPDLNAKLNEK"
                     /name="helix-turn-helix domain-containing protein"
     gene            2173..2847
                     /locus_tag="FJV42_RS29885"
                     /old_locus_tag="FJV42_29880"
     CDS             2173..2847
                     /locus_tag="FJV42_RS29885"
                     /old_locus_tag="FJV42_29880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001259273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NYN domain-containing protein"
                     /protein_id="WP_032419561.1"
                     /translation="MRTIVYVDGFNFYHGLVKRSGYKWLDLYKLFEEQLLPIRARESQL
                     IQVKFFTAEIKAKFASRGELAHQAQQAYHRALVQIYGDKLQIIKGYYSERQECAMTFNE
                     GHPPSKTDRTTVWKLEEKQTDVRMALEMYRDAIRGEVEQLVLCTNDSDMIPPIEMIKAD
                     RPELKIGIVVPREQDTSRVISNLASLGDWSLPYVSYEALRLALLPDKVPTRRKPILKPN
                     HW"
                     /name="NYN domain-containing protein"
     gene            3817..4158
                     /locus_tag="FJV42_RS29900"
                     /old_locus_tag="FJV42_29895"
     CDS             3817..4158
                     /locus_tag="FJV42_RS29900"
                     /old_locus_tag="FJV42_29895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006122514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="WP_057172823.1"
                     /translation="MADKRNKMLTMWVTEDEHRRLLERCDGRQLAAWMRQSCLDEKPAR
                     ACRLPSISPALLRQLAGMGNNLNQIARKVNAVGAGHDRVQIVAALMAIDAGLERLRHAV
                     LEKGGDDDR"
                     /name="MobC family plasmid mobilization relaxosome protein"
     gene            4367..>4798
                     /locus_tag="FJV42_RS31005"
                     /pseudo=""
     CDS             4367..>4798
                     /locus_tag="FJV42_RS31005"
                     /inference="COORDINATES: protein motif:HMM:NF015397.4"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            4836..5321
                     /locus_tag="FJV42_RS29910"
                     /old_locus_tag="FJV42_29905"
     CDS             4836..5321
                     /locus_tag="FJV42_RS29910"
                     /old_locus_tag="FJV42_29905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001749519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeB family mobilization protein"
                     /protein_id="WP_064147840.1"
                     /translation="MSSLLALAKDLEQQSKAQQQSTGEMLKAAFSEHEKSVKAELSASA
                     KRISDAISAHEQGMTAAMQSNRLSVLRMVGRTWLTITLVSVLLIATSGSILWWQGQQIT
                     GNYRTIRAQERTQAMLSEKNHGVQLSLCGEKKLSCVKVNPKAGAYGEDGNWMVLERK"
                     /name="MbeB family mobilization protein"
     Typing          3550..3730
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="87.978"
                     /coverage="83.0"
                     /evalue="2.08e-53"
     Typing          complement(3090..3600)
                     /name="ColRNAI_rep_cluster_1987"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="93.359"
                     /coverage="98.0"
                     /evalue="0.0"
     Typing          4149..5359
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="94.802"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 agagcagcta catcaggact actcgcaaag gctggacgag tgggagagcg ccttcgcgga
       61 atggcagaag atgtctgggc ttatgcaacg ggagaacgcg gcactgaacg agcgcgtgac
      121 gcgcttgagt cagcaggtgg cgaacttgag caggcagtta cagcgtttga gccagtagtg
      181 cagcggcatg aaatggcggt ggccgccgaa cgggcatacg agcagcgaca gcacgaaaaa
      241 gagctggcgg aagcccgttc ccgtcagcgg agttatgacg gtccgacact gggctgaaca
      301 gtatcatccg gtgacaggcc gcacgaagaa gggctcttat ttctcccgct aaataggttc
      361 gtgatcaaaa agagcacggc ctatacctag ggggaattat gaaattgctt aacgtcattg
      421 aagctgtact taactgcctg tatctggcga ccgagctgtg ggactggctg gagaagcatt
      481 ttcctgtttt taaggcgttc atccggattc tggcctgaaa tcagactgta tgcatctggc
      541 tgcatgacca tgcagccggg gaaaatttat ctgtcacgaa cggggcggtg tatcgggtgg
      601 tttgttgccg gttttacctg actgccgtcc cgtttgtggc gaacctgtcc ggagcggtgc
      661 gggcaaggga tgttatggta aatatcttcg agcttcaggt acaaaaaaag ccccggaggg
      721 ctctcaatca tttgattccg aaacggtcac ctttagtgtc cgttctgaca atcaattgcc
      781 atttgattgc ttgttgctga ctgtgctgat gatggttttg cggcgggaac gggtcgctgc
      841 cgttactggt gatctctttt ccgcagacgg tacatcgata aattccagaa tggggaacgc
      901 tgtctcctgg attatatcgt gacttccacc atgtttgatc gctactgacg ctttgtaaaa
      961 acttctctgt ttcgctggta tatgcagcca tttagctttc cttttctgaa tttatagggc
     1021 agagatagaa aagccgcccg ctggggcggc ttttcgttgc cagtctaaat atcaagcata
     1081 ttgggttaac atccaggtta cagcctttcc tgcgtacgga ggcattacat taccttttgc
     1141 tatcggggct gtagtggaag gggttcctac gactttccag acaccacttt caggacactt
     1201 ttgtccggta gaagcagtcg taccaattgg tgctttagac atgctaattc ctctttttgt
     1261 gttttgtccg tattgctgtt tgtgtagcga tactgatgtt tagtttagaa attagctttc
     1321 aatagggagc tgttgtcatt ttctagaaat gtgatgctga acaccttttg tacagtgatg
     1381 tgcgcgcttt ggctgtcgga atttttggtt acttttcgtt tagtttggcg ttgaggtctg
     1441 gcgtaagaat gtttagtgac ttaactaaaa gagacatatc gtaaatgttt cgccctttgt
     1501 acttagggtt gtccttgctt gtacgaattt ttgtaagcaa tccgtaattt tcaagttctt
     1561 ggagtgagcg ttgaactgtt cttgatgaaa ctcccattct aaccgcgatg ctctcttgag
     1621 atggatgtgg ccaatcatag ggtttccacc agtggataat tagatgaagt agcacattga
     1681 atgttgtggg ggtcatattg agtgcgccct gcaggaagaa aagggatgta ggaatggctg
     1741 accatcccat gcttaacgct tccttccccc atttagactc aagtgtctgt ttttgaatgt
     1801 ctaaattatt tttttgatct gacatatacc aacctgctaa gctgaagtct tcttagaaga
     1861 cttcagctta gcaggttggt aaattaattc atataattag tacgacacca gtgcgcttat
     1921 aatatcatta tatttaacta tacttaatct acactcacct cttggtagcg cgattaagtt
     1981 acgcagctcc cttgaggctc taaacctccc tttaggtggg cagcgattaa gttacgcgtc
     2041 ttccttcagg agcttgaaac cgccctctcg gttagtttta accctgaggt actacaactt
     2101 aaactgtttg ctaacgttag tttttgttgt taaaaccgcc cttagaggcg gtttttttat
     2161 gcgcgaaata aaatgagaac aatagtttac gtagatgggt tcaattttta tcacggattg
     2221 gttaagcgtt cgggatataa gtggttagac ctttataagc tctttgaaga acaactgctt
     2281 ccgataagag cacgagaatc acagttgatt caggtgaagt tctttactgc tgagatcaag
     2341 gcaaagtttg cttctcgggg tgaattggcg caccaagctc agcaagccta ccatcgagca
     2401 ttagtacaga tctatggcga taagctacag ataataaaag gttattactc agagcgtcag
     2461 gaatgtgcaa tgacctttaa tgaggggcat cctccatcaa aaacggatag aacaacggtc
     2521 tggaagttag aagaaaagca gacagacgtt agaatggctt tagaaatgta tcgcgatgcg
     2581 attcgtggtg aagtagaaca attggttctc tgcactaacg actcagatat gataccgcca
     2641 atagaaatga taaaagctga tcggcctgag ttaaaaatag gaatcgtagt gccaagggaa
     2701 caggatacta gtcgagtgat tagtaatctg gctagtttag gggattggag cttgccatat
     2761 gtatcctatg aagccttaag attagcttta ttgccagata aagtccccac taggcggaag
     2821 ccaatactga agccaaatca ctggtaaaca gccggatctt cttgtgatcc ttttactctc
     2881 gtcgtaatct catgccctgc aaacaaaaaa accaccgcta ccaacggtgg ttcgtttgcc
     2941 ggaatcaaga gctaccaact ctttttcccg aaggtaactg gctttcacgg agcgcagata
     3001 ccaaaactgt ccttccagtg tagccgcagt caggccacca cttcaagaac tctgtagaag
     3061 cactctacta ctctgctccg tgaatcctgt taccagtggc tgctgccagt ggcgtttttg
     3121 cgtgtctttc cggattggac tcaagacgat agttaccgga aaaggcgcag cggtcggact
     3181 gaacgggggg ttcgtgcata cagtccagct tggagcgaac tgcctacccg gaactgagtg
     3241 tcaggcgtgg aatgagacaa acgcggccat aacagcggaa tgacaccggt aaaccgaaag
     3301 gcaggaacag gagagcgcac gagggagcca ccagggggaa acgcctggta tctttatagt
     3361 cctgtcgggt ttcgccacca ctgatttgag cgtcagattt cgtgatgctt gtcagggggg
     3421 cggagcctat ggaaaaacgg cagcgccgca tccttttccc gccctgcttg tcatgtcata
     3481 tgcctttgct cttatccgtg tgtgcgtaac gcccgccgca gccgaacggc aggagcggaa
     3541 gcgaccgagt gagcgaggag gcgtcatatc accgtaacct ccattttctc ctgtacgccc
     3601 tgtagctgca ttttccccct gtcacatgaa gcactttcat aaagtgttac tcctccgtaa
     3661 catattgagc cagtatacac tccgctagcg ctacgtgact ggttcagggc tgcgccccga
     3721 aacccgctaa aagccactga cgcgcctgcg gcttgtccaa caccgtgccg accgggaaac
     3781 atttcccgcc cgtcccggtg ttatcaggag gctactctgg cagacaaacg caacaagatg
     3841 ctcacgatgt gggtgacgga agacgaacac cggcggctgc tcgagcggtg cgacggcagg
     3901 cagctggcgg cgtggatgcg tcagtcctgc ctcgatgaga agccggcgcg tgcctgcaga
     3961 ctgccgtcaa tatcgccggc gctgctgcgc cagcttgccg gtatgggtaa caacctgaac
     4021 cagatcgccc ggaaagtgaa tgccgttggt gccggtcatg atcgggtgca gattgtggcc
     4081 gccctgatgg caatagacgc gggactggag cggctgcggc atgcggtgct ggaaaaaggg
     4141 ggggatgatg atcgttaaat ttcatccccg ggggcgcggt ggtggtgccg gtccggtgga
     4201 ttacctgctg ggaaaagacc ggcagcgcga gggggcgacc gtgctgcagg gaaaaccgga
     4261 ggaagtccgg gagcttatcg atgcctcgcc gtatgcgaaa aagtacacct ccggcgtgct
     4321 gtcgttcgcg gaggctgaac tgccgcccgg gcagcgggag cagatcatgg ccagctttga
     4381 gcgggttctg atgcccgggc tcgataaaga ccagtacagc attctgtggg tggagcatac
     4441 cgacaagggg aggctggagc tgaatttcct gatccccaac actgaactgc tgaccgggaa
     4501 acgcctgcag ccgtactacg atcgcgccga ccggccgcgc atcgatgcct ggcagaccgt
     4561 ggtgaacggc agactggggc tgcatgatcc aaacgccccg gagaaccggc ggttactggt
     4621 cacgccgtcc gcactgccgg aaacgaagct ggaagccgct caggcgatta cacgggggtt
     4681 gctggcctta gcctcatccg gggagctcaa aacgcgcgag gacgtcacag gggcgctcac
     4741 agcggcaggt tttgaggtgg tccgcaccac aaaaaacagt atcagcattg ccgacccgga
     4801 cggggggcga aacatccgac tgaagggagc catttatgag cagtctttta gcgctggcga
     4861 aggacttgga gcagcaatcg aaagcgcagc agcagagtac cggcgagatg ctgaaagccg
     4921 cattcagcga gcacgagaag tctgtaaaag cggaactgag cgcaagcgcg aagagaatca
     4981 gcgacgccat cagcgcccac gagcagggta tgaccgcggc gatgcagtcg aaccgcctga
     5041 gcgtgctgcg tatggtcggc cggacgtggc tgaccatcac cctggtctcg gtactgctga
     5101 tcgccacgag cgggagcatt ctgtggtggc aggggcagca gatcaccggg aattaccgga
     5161 ctatccgggc gcaggagcgg acgcaggcca tgctgtcgga gaagaaccac ggcgtgcagc
     5221 tgtcgctctg cggggagaag aaactgtcct gcgtcaaagt gaacccgaaa gcgggagctt
     5281 acggggagga cgggaactgg atggtactgg agaggaaata gcccatgacg gaactggaaa
     5341 aacagttgct gaccgcatt
//
