LOCUS       NZ_CP040839             3138 bp    DNA     circular CON 10-JAN-2024
DEFINITION  Klebsiella pneumoniae strain SH12 plasmid pSH12_6, complete
            sequence.
ACCESSION   NZ_CP040839
VERSION     NZ_CP040839.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN11963759
            Assembly: GCF_019444635.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 3138)
  AUTHORS   Yang,X.
  TITLE     complete sequence of Klebsiella pneumoniae strain SH12
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3138)
  AUTHORS   Yang,X.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2019) The Department of Applied Biology and
            Chemical Technology, The Hong Kong Polytechnic University, Hung Hom,
            Kowloon, Hong Kong 999999, Hong Kong
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: SPAdes v. 3.13.0
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 100.0x
            Sequencing Technology :: Illumina NextSeq; Oxford Nanopore MiniION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 01/10/2024 03:49:39
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,944
            CDSs (total)                      :: 5,823
            Genes (coding)                    :: 5,667
            CDSs (with protein)               :: 5,667
            Genes (RNA)                       :: 121
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 10
            Pseudo Genes (total)              :: 156
            CDSs (without protein)            :: 156
            Pseudo Genes (ambiguous residues) :: 0 of 156
            Pseudo Genes (frameshifted)       :: 67 of 156
            Pseudo Genes (incomplete)         :: 96 of 156
            Pseudo Genes (internal stop)      :: 20 of 156
            Pseudo Genes (multiple problems)  :: 26 of 156
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP040839.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3138
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="SH12"
                     /isolation_source="sputum"
                     /db_xref="taxon:573"
                     /plasmid="pSH12_6"
                     /geo_loc_name="China"
                     /collection_date="2016"
     gene            92..487
                     /locus_tag="FHY43_RS29495"
                     /old_locus_tag="FHY43_30105"
     CDS             92..487
                     /locus_tag="FHY43_RS29495"
                     /old_locus_tag="FHY43_30105"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_001222910.1"
                     /translation="MRISNIDWLKKRIGFIRKLGEQTARQRQIIDLLDNEAGLTEQERK
                     LLHVLATAEKNELQAQENARKQANQKRMEGKTQRRERNHRLFLAAGLLIEAGLVDTKTG
                     ELRYPKDNILQKLKAIRLDLETSPDHH"
                     /name="hypothetical protein"
     gene            complement(1592..2125)
                     /locus_tag="FHY43_RS29500"
                     /old_locus_tag="FHY43_30115"
     CDS             complement(1592..2125)
                     /locus_tag="FHY43_RS29500"
                     /old_locus_tag="FHY43_30115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005221103.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_106509525.1"
                     /translation="MASTEEKLLTLLLSVEHLQHTAMEQQKAVADSLAVARETLRGYRD
                     ISDGVAKQVRDEVRNEVQKLDVAGLIGERISQDFQRLEESVANMKANADALNKDIATIH
                     HNVVKEYNTLNKYSLKWFIGVTVSFLVMFCVLGWGMKTMLDRNYNATAAVYQKVVTLED
                     KLAEKPATGKSRKN"
                     /name="hypothetical protein"
     gene            complement(2128..3054)
                     /locus_tag="FHY43_RS29505"
                     /old_locus_tag="FHY43_30120"
     CDS             complement(2128..3054)
                     /locus_tag="FHY43_RS29505"
                     /old_locus_tag="FHY43_30120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005221102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobA/MobL family protein"
                     /protein_id="WP_001314449.1"
                     /translation="MATYHLSVKFGGKGQAANHADYIERKEKYRDRQDLEYSAHGNMPE
                     WARDNPSHFWQAADQFERANGSTYRELEIALPRELTAEQRLELVQDFVRQEAGERHAWS
                     FAIHNPKASIDGGEQPHAHIMMSQRVNDGIERTPEQYFRRYNARYPERGGAKKDSGSLT
                     LTQQKEQLRELRKRWEVKHNEHMRKHGFERGFIDCRTLKEQGIERRPEVHLGFEAAGRL
                     DDAQRHDIMQKRSEPDYSRHLEQARTVGHDIREWLDTPVKQHELVRRLQHDVAREHGFD
                     MRDRVSRQNRTEPERVKSPSRGFSMGF"
                     /name="MobA/MobL family protein"
     Typing          complement(2132..3054)
                     /name="MOBQ"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="98.052"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 gcacggaaga taccccctgc acccaccgac cgcaagcgat atactgcaca accccaacac
       61 accgcaaaaa acaccaggga gcatcccaaa catgcgcatc agcaacatcg actggttgaa
      121 gaaacgaatc ggctttatca ggaagctcgg agaacagacc gcacgacaga ggcagatcat
      181 tgacctgctc gataacgaag ccggactaac agaacaggag cgcaaactac tccacgtcct
      241 ggcaaccgca gaaaaaaacg agctacaggc acaggagaac gcacgcaaac aggccaacca
      301 aaaacggatg gaggggaaaa cacaacgacg ggaacgcaat caccgcctgt ttcttgcggc
      361 ggggttactg atcgaggccg gactagtgga cacaaaaaca ggcgaactga gatacccaaa
      421 agacaatata ttacagaaac ttaaggcaat caggctcgat cttgaaacaa gcccagatca
      481 tcattaattc cgctgcgtgg tggtgcgttt gcctgccggt gttcaatgtt ttcgatttcg
      541 cgacgcgcta cgcgcggatc tggcacaggc gcgtaagtgc acaatgcttg cctctgtgac
      601 tcttccgctt cctcgcccac tcgctcacta cgttcggtcg ctggggctgc ggcgagcggt
      661 gggatcactc tcgttgtgat gcagatccgt tttttttttt gcactggagt tatcaggagt
      721 agcggtgcac atgggatcgt gcgatatgct ggatggtgga aggtcggagg gaacggcaac
      781 aactcacccc tcccagtgaa gggacgggta gtttgccgct ctcgatatgc cggacggagc
      841 caaggccatc gatcacgggg cgcgtcggtg gaagaacccg cgcctgcgtg acgtatgcgt
      901 cttcgccgca ccatctcacc cgtcacgcca ccacataccg ggaactgccg ccaaggtcta
      961 actcaaccaa tctagccgcg ctacatacgg tttttgtggc aactcatcag gtgtccgctg
     1021 tcgatgaaac tctctgcgcc ggtagcggaa ctctcacgcg tgcggttgcc gtcgtcacag
     1081 ctcccccaac cgcaaacggt ctttgcaaac acgcaatcat ctgcaaaaac aggatttttt
     1141 cgggattctg gggaggctgt gcggtcggta atgcttgaag aatacagaag gttcatgcaa
     1201 actgaatgaa ctggtttccg ttgtcaccgc aacagactcc acaggaacat tgaggaggtc
     1261 gaaaacctca atgaacccga agaagctcgc ctaacggcgg gcttttttcg ttctacgctc
     1321 cctgacgaaa gatcgcaagt gcaataacga gatttttcac gtctttacgc tcaaaaagta
     1381 aaaaaaccat gttttcccct ggctgaatcc ccaaaaacgc gtgaaatgcg ttttcaggat
     1441 gttgcatagc tatgcacaaa tacggcacac gatttgtttc gctcgcccca gccgtcgaac
     1501 gggtcaaaat ggcaaacttt ctcatcagaa aacggtgaac gggacgcgga attttttcgc
     1561 gtcccgtgag gcgttggaca agcgaagcgc gtcagttttt ccggctcttc cctgttgctg
     1621 gtttctccgc cagtttatct tccagtgtca caactttctg atacaccgcc gctgtggcgt
     1681 tgtagttcct gtcgagcatt gttttcattc cccatccaag cacacagaac ataaccagaa
     1741 aactgaccgt aacaccgata aaccatttca gactgtattt attgagcgtg ttgtattctt
     1801 taacaacatt gtgatgaatt gtcgcaatgt ccttgttcag ggcatccgcg tttgccttca
     1861 tgtttgcgac tgactcttcc agccgctgaa aatcctggct gatgcgctca cctatcagcc
     1921 ctgcaacatc cagcttctgc acctcgtttc tgacttcatc cctgacctgt tttgccacac
     1981 cgtcagaaat atcccgatat ccgcgaagtg tttcccttgc cacagccaga gaatcagcaa
     2041 cagctttctg ttgctccatt gcggtatgtt gcagatgctc caccgataac aggagcgtga
     2101 gtaatttttc ttctgtgctg gccatgttca gaatcccata gaaaatccac gtgacggtga
     2161 tttaacccgt tcaggttcag ttcggttctg tctgctcact ctgtctctca tgtcaaagcc
     2221 atgctcccgc gcaacatcat gttgcagcct tctgaccagt tcatgttgct taaccggagt
     2281 gtccagccat tccctgatgt catgcccgac cgttcgcgcc tgttcaagat ggcgggaata
     2341 gtccggttca gaccgttttt gcatgatgtc atgacgctgg gcatcatcaa gccgtccggc
     2401 agcttcaaaa cccagatgca cttcgggacg tcgttcaatg ccctgttctt tcagcgtccg
     2461 gcagtcaatg aagccccttt caaagccatg ctttctcata tgttcgttgt gcttcacctc
     2521 ccagcgtttt cgcaattccc gcaactgctc tttttgctga gtgagagtca ggcttccgga
     2581 atcctttttc gcacctcccc gctcgggata cctggcgtta tagcgccgga aatactgttc
     2641 cggtgtacgt tcaatgccat cattcacacg ctggctcatc atgatatgcg catgaggctg
     2701 ttcgccgccg tcaatgctcg ctttcggatt gtgaatggca aaactccagg cgtgccgttc
     2761 gccagcttcc tgacgtacaa aatcctgcac cagttcaagg cgctgttccg ctgtcagttc
     2821 acggggtaat gcaatttcaa gttcccgata ggtcgaaccg ttcgcacgtt caaactggtc
     2881 agccgcctgc cagaaatgtg agggattatc tcgcgcccat tccggcatgt ttccgtgtgc
     2941 ggaatattcc aaatcctgac ggtcgcggta tttctctttg cgctcgatgt aatcggcgtg
     3001 gtttgcagcc tgccccttgc caccaaattt aacgctgagg tgataggttg ccacggtttc
     3061 agccctccgc aggagcgcac tgtttctcga cgaaggagag aaacatataa gtgcgcttcc
     3121 ttctaatttt acgaatta
//
