LOCUS       NZ_CP040353             4007 bp    DNA     circular CON 25-JUN-2023
DEFINITION  Klebsiella pneumoniae strain P39 plasmid p.P39Z2, complete sequence.
ACCESSION   NZ_CP040353
VERSION     NZ_CP040353.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN11649358
            Assembly: GCF_030323605.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 4007)
  AUTHORS   Zhang,P.
  TITLE     Whole genome of Klebsiella pneumonias P39
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4007)
  AUTHORS   Zhang,P.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-MAY-2019) Neurobiology Laboratory, Kailuan General
            Hospital, 57 Xinhua East Road, Tangshan 063000, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. v0.4.5
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 196.0x
            Sequencing Technology :: Oxford Nanopore GridION; Illumina HiSeq
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 06/23/2023 17:45:50
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,294
            CDSs (total)                      :: 5,169
            Genes (coding)                    :: 5,051
            CDSs (with protein)               :: 5,051
            Genes (RNA)                       :: 125
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 85
            ncRNAs                            :: 15
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 65 of 118
            Pseudo Genes (incomplete)         :: 60 of 118
            Pseudo Genes (internal stop)      :: 23 of 118
            Pseudo Genes (multiple problems)  :: 29 of 118
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP040353.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4007
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="P39"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="p.P39Z2"
                     /geo_loc_name="China:Tangshan"
                     /collection_date="2016-05-11"
     gene            join(3923..4007,1..671)
                     /locus_tag="FEZ16_RS26455"
                     /old_locus_tag="FEZ16_26755"
     CDS             join(3923..4007,1..671)
                     /locus_tag="FEZ16_RS26455"
                     /old_locus_tag="FEZ16_26755"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_235123389.1"
                     /translation="MTTVIYADQDFVACDSKWACEDSLLSLHDHYINKYVYFTGDKSDY
                     IAFFAGDEYPIVAYQALYQKAISNDDFFRYSTEQAELNLSVEWLIVDKTSGAYVNSNAM
                     ASWFFDVRYLGTGGEHAAHFFHYSKRVKYRSIYENNVVGAMKYAYYKDPKYSGHPHNLK
                     SWNPKYPINNTVDNNHHMYRDVLISRLGELNMNNNGGHAITELPVVAKLSPVKDRRMVL
                     PPLKTTPSNSAPKVTVSSAISMMNFLNTL"
                     /name="hypothetical protein"
     gene            1062..1766
                     /locus_tag="FEZ16_RS26460"
                     /old_locus_tag="FEZ16_26760"
     CDS             1062..1766
                     /locus_tag="FEZ16_RS26460"
                     /old_locus_tag="FEZ16_26760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000805974.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_077227850.1"
                     /translation="MKPWVKLPSKFVLDGRLKELLWIDDKVGKPSHKVAALKLYVALSM
                     RAESKEVFSHYIEAYITRYSAQVTYEELSELTALSRSSISSGIDILVGLGVLSVDKDGR
                     KNIYRFPGFDGSKDWCKIPYRALLSRDGKRIEAFHKLKLRSKIELYALKMFIYLCAVRD
                     NHNHYTSASFERINLQTSIPEADIPRTHAYLSGIGLIALVEKRRDGFGGMKKNPPNAYF
                     VTGHNDFFIGKR"
                     /name="hypothetical protein"
     gene            complement(2534..2935)
                     /locus_tag="FEZ16_RS26465"
                     /old_locus_tag="FEZ16_26765"
     CDS             complement(2534..2935)
                     /locus_tag="FEZ16_RS26465"
                     /old_locus_tag="FEZ16_26765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009310048.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="WP_235139128.1"
                     /translation="MARVSISEAARLTGKSRTTLHRLIKAGDLSTCSGERNAKMVDTSE
                     LLRVFGPFKQPKDEHHLGQFSEQRDTASADQSEQVIRHLKQEIEHLNTLLLSKDSHIDS
                     LKQAMLLLENHQAKLTESPAPWWKFWKKS"
                     /name="helix-turn-helix domain-containing protein"
     gene            complement(2935..3126)
                     /locus_tag="FEZ16_RS26470"
                     /old_locus_tag="FEZ16_26770"
     CDS             complement(2935..3126)
                     /locus_tag="FEZ16_RS26470"
                     /old_locus_tag="FEZ16_26770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000166328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_004187666.1"
                     /translation="MTKQQKTALNMAKFIQNQSLLLLEKLNELDLDVEADLCEKLHDDA
                     EHLFRTLSSRLDALQDGN"
                     /name="Rop family plasmid primer RNA-binding protein"
     Typing          3420..3821
                     /name="rep_cluster_2374"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="92.822"
                     /coverage="95.0"
                     /evalue="2.8800000000000003e-164"
ORIGIN
        1 accactacat aaataaatat gtgtatttca ctggagataa atcagattac atcgcgtttt
       61 tcgctgggga tgagtacccc attgtggcat atcaagcact gtaccaaaaa gccataagca
      121 acgatgattt ttttaggtat tcaacggaac aagctgagct taatttaagt gtagagtggt
      181 tgatagtcga taaaacaagc ggtgcatatg ttaactccaa tgcgatggct agttggttct
      241 ttgatgtacg atacttaggg actggcggag aacacgcagc acattttttc cactatagta
      301 aaagagtgaa gtatcgtagc atctacgaaa ataacgttgt cggcgcgatg aagtacgcat
      361 actataagga cccaaagtat tcagggcatc cacacaactt aaagtcatgg aaccctaagt
      421 accctatcaa caacactgtt gataataacc atcacatgta tagagatgta ctaattagtc
      481 gattaggcga attgaatatg aacaacaatg gcggacatgc aatcaccgag ttgccagtcg
      541 ttgcgaaact gtcgccagtt aaagatcgga gaatggtttt acctccacta aagaccactc
      601 catctaactc agcacctaag gtgacagtat cttcagcgat atcaatgatg aacttcctta
      661 atacgctgta aaaacgccct atgtgggcgt ttttttatgc tcccctttaa agaacaaaac
      721 gcccatccgc cataacctca tatacaaccc ttctcatgaa ctattaatta ctttcaaaag
      781 acgatttatt aacaacgtaa caccatgatt taaaataaaa aaaattaaaa attttatttt
      841 ttcagactaa cccatatcta gatagatatc gtcaaggcat gtttaaattt tcctatcaaa
      901 gcgactgaag ccataggaaa acatatggaa accgaaaaat atatattatt aatcaaacac
      961 ttatccgata gctcacacaa gttaatccct cttgttttgg cggtttccgt tcttgtcgcc
     1021 tttctatcaa tactgtttat tgcaatacgc atggggtaac aatgaagcct tgggtaaaat
     1081 tgccttcaaa gttcgtacta gatgggcgct taaaagagct tttatggatt gatgacaagg
     1141 taggaaaacc gtcacataag gtcgcagcct taaaactgta tgtcgcgctg tctatgagag
     1201 cggaaagtaa agaggttttc agtcactaca tagaggcata cataacacgt tactcagctc
     1261 aggtgaccta tgaggagctc tcagaactaa cagccctgag cagatcatca atatcatcag
     1321 gtattgatat cttagtgggc cttggggtgt tatcagtaga taaagacggg cgaaaaaaca
     1381 tctaccgatt ccctggcttt gatggttcta aagactggtg caagatacct tacagggcat
     1441 tgttatctcg tgatggcaaa cggatagaag cattccataa gcttaaatta agaagcaaga
     1501 ttgagctcta tgcgctaaag atgttcatct acttatgtgc tgttagagac aaccacaatc
     1561 actatacaag tgcttcattt gaaagaataa acttgcaaac ctctattccg gaagcggaca
     1621 tcccaaggac gcatgcctac ctgagtggta tagggctcat agctttagtg gagaaacgca
     1681 gagatgggtt tggtggcatg aagaaaaatc ctccaaatgc ctactttgtt acaggccaca
     1741 atgacttttt tatcgggaag cgatagtcga taagaaatca aacaatacga tcgcaattta
     1801 ccataacgcg tcattacgcg caccgctcag acggcctgtg cgcgattttc ccgcctgaac
     1861 ctcaaaactg catgtcttat cccctgaaaa cggctcagaa tggcgctgat gatttctgag
     1921 gctgtgaatc gttatgcagc cgactgcctg gcatcaggtt tcagcctgaa ttcaaaccca
     1981 accccaaaaa agagtatctt tcgccttgcc tgaaacggtg aacgggcggg caatttattg
     2041 cgtggccgtg aagcgttgcc ggcgcagccg gaaaaccggt tttcagcacg atcaggaatc
     2101 gggttcgtcg acggccggca atcacgttat ggcaagtcgc cggacgactc actacacgat
     2161 tcaccggcga ttcgactcgt gacttgactc tagagtcgtc aaggtcaaaa aaacaccaaa
     2221 atgacgattc gactctagag tcaagtcgtc ataagttact gatagtctta agtgagtcgt
     2281 cgatgactct atgacgagtc gtcggcaagt cgtacacgaa tcgccgacga cttggattca
     2341 ccttacagaa agtaatactg cgtaatttaa taacccacaa ctaactgata ttaatgagtt
     2401 atcttcaaaa ttttaatttt gcgtggggtg tgggtatttt tagtggtgag gagcgttcag
     2461 agatctgacg atttttggga aggttcagga actccccggg atggccggag aggaaaagtc
     2521 aagcatggca ggatcaggat tttttccaga atttccacca tggcgccggg gattccgtta
     2581 attttgcctg gtgattttca agaaggagca tggcctgttt caggctgtca atgtgcgaat
     2641 ccttggacaa aagtaaggtg ttcaagtgtt caatctcctg tttcagatga cgaatcacct
     2701 gttcactctg gtcagcagag gctgtatcac gctgttcaga gaactgtcca agatggtgtt
     2761 catccttcgg ttgtttaaag ggaccaaaga cacgcaaaag ctctgaagta tctaccattt
     2821 ttgcatttcg ttcaccgcta caggtggaca ggtcacctgc tttaattaac ctgtgcagtg
     2881 ttgttctact cttacccgtc agtcgggcag cctcactaat agacactctg gccatcagtt
     2941 accatcctgt aatgcatcca gtctcgagga cagtgtacgg aaaagatgct ccgcatcatc
     3001 gtggagtttc tcacaaaggt cggcctcgac atcgagatca agctcgttaa gcttctccaa
     3061 caggagcaga gactgattct ggatgaattt agccatgttg agcgctgttt tctgttgttt
     3121 tgtcataaga ggcctcagtg cgtcagtgct cagtgtaagg atgttctctt ttccgcttcc
     3181 tcgctcactc agtcgctacg ctcctgccgt tcggctgcgg cgagcggcag gagcatgcgt
     3241 agaaaagccc aagaaaaccg agcagccgca tgacggaaag aaggaaaggc cgcacggcca
     3301 tcgtttttcc ataggctccg cccccctgac aagcatcaca gaaagacgct caaatcagtg
     3361 gtggcgaaac ccgacaggac tataaagata cctatcattt ctgataggtg gctccctcgt
     3421 gcgctctcct gttcctgcct ttcggtttac cggtgtcatt ccgctgttat ggccgcggtt
     3481 tctcattcca cgcctgacac tcggttccgg gaaggcagtt cgctccaagc tggactgtat
     3541 gcacgaaccc cccgttcagt ccgaccgctg cgccttgtcc ggtaactgtc gacttgagtc
     3601 caacccggaa agacacgaca aaacgccact ggcagcagcc actgatatct ggttcgcaga
     3661 acaaagaagt cttgaggtgt tgaagtgtga ggcggactac ggctacactg ttagaacgaa
     3721 ttcggtttct gtgctctgcg aaagccagtt accacggttc agaaacttgc cggttaatga
     3781 accttcgaaa aaaccacctt gccgggtggt tttttcgttt ccaatggaag atacgctgtc
     3841 actgctgtat aagtcaacta actagcagtc ttcataagca tagcgatatg cgcacaacca
     3901 actgttctat aaaacaatta caatgacgac cgtaatttac gcagaccaag attttgttgc
     3961 ttgtgacagt aagtgggcat gtgaggatag ccttctatcc cttcatg
//
