LOCUS       NZ_CP040052             5681 bp    DNA     circular CON 05-JAN-2024
DEFINITION  Acinetobacter baumannii strain VB16141 plasmid unnamed2, complete
            sequence.
ACCESSION   NZ_CP040052
VERSION     NZ_CP040052.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN11557458
            Assembly: GCF_005280435.1
KEYWORDS    RefSeq.
SOURCE      Acinetobacter baumannii
  ORGANISM  Acinetobacter baumannii
            Bacteria; Pseudomonadota; Gammaproteobacteria; Moraxellales;
            Moraxellaceae; Acinetobacter; Acinetobacter calcoaceticus/baumannii
            complex.
REFERENCE   1  (bases 1 to 5681)
  AUTHORS   Veeraraghavan,B., Vijayakumar,S., Vasudevan,K., Narasimman,V. and
            Venkatesan,M.
  TITLE     Colistin resistant Acinetobacter baumannii_VB16141_hybrid assembly
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5681)
  AUTHORS   Veeraraghavan,B., Vijayakumar,S., Vasudevan,K., Narasimman,V. and
            Venkatesan,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (02-MAY-2019) Clinical Microbiology, Christian Medical
            College, Ida Scudder road, Vellore 632004, India
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method :: Canu v. 1.7; Unicycler hybrid v. 0.4.6
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 85.6x
            Sequencing Technology :: IonTorrent; Oxford Nanopore MiniION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 01/05/2024 02:01:07
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,143
            CDSs (total)                      :: 4,047
            Genes (coding)                    :: 3,902
            CDSs (with protein)               :: 3,902
            Genes (RNA)                       :: 96
            rRNAs                             :: 6, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 74
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 145
            CDSs (without protein)            :: 145
            Pseudo Genes (ambiguous residues) :: 0 of 145
            Pseudo Genes (frameshifted)       :: 78 of 145
            Pseudo Genes (incomplete)         :: 63 of 145
            Pseudo Genes (internal stop)      :: 14 of 145
            Pseudo Genes (multiple problems)  :: 9 of 145
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP040052.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..5681
                     /organism="Acinetobacter baumannii"
                     /mol_type="genomic DNA"
                     /strain="VB16141"
                     /isolation_source="blood"
                     /host="Homo sapiens"
                     /db_xref="taxon:470"
                     /plasmid="unnamed2"
                     /geo_loc_name="India"
                     /lat_lon="12.9165 N 79.1325 E"
                     /collection_date="2019"
                     /collected_by="Christian Medical College"
     gene            complement(join(5440..5681,1..259))
                     /locus_tag="FDF20_RS20905"
                     /old_locus_tag="FDF20_20905"
     CDS             complement(join(5440..5681,1..259))
                     /locus_tag="FDF20_RS20905"
                     /old_locus_tag="FDF20_20905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018680098.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_025464991.1"
                     /translation="MTPDEKKLYALMAVAEQQQNLVNQAVKELQITKEHIQKVIAEQTH
                     STVSKSLNTGLQEGTAELIKTAKALGHLKNSIESTSDQFSWKIITIILGIFAILMLGII
                     WLFSVYIKPLENIPQIESLRQQGIQFDIGSCTVGEESKPCVRVMKKQCGYGKNGDFCVI
                     DPK"
                     /name="hypothetical protein"
     gene            complement(256..1179)
                     /locus_tag="FDF20_RS20910"
                     /old_locus_tag="FDF20_20910"
     CDS             complement(256..1179)
                     /locus_tag="FDF20_RS20910"
                     /old_locus_tag="FDF20_20910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005249378.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobA/MobL family protein"
                     /protein_id="WP_002011644.1"
                     /translation="MAIARLSVKVGKAGKAAPHAEYIDRDEEKKLKQEQSDLEHSDYGN
                     MPKWAEHNPITFWQAADLYERKNGSTYREYEIALPREMNAEQRLELVEDFIQSEIGSKY
                     PYQFAIHNPKAMDGNDQPHIHLMFNERLQDGIERDPEQYFKRYNSKNPERGGAKKDNTG
                     KSYQERKTDIKDLRQRWADLCNSHLEKHQIDSRIDMRSYKEQGIEKDPEKKLLPSQAKD
                     PEIREALQQSRTAYKELERLDLGDPKNDLKDLKNSPISDKEIKQGIESFKADFASFKQL
                     ALQQYKEQQKLEREQQKTMKFRGMSR"
                     /name="MobA/MobL family protein"
     gene            complement(1179..1334)
                     /locus_tag="FDF20_RS21090"
     CDS             complement(1179..1334)
                     /locus_tag="FDF20_RS21090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005098410.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme exporter protein CcmD"
                     /protein_id="WP_161772599.1"
                     /translation="MQLKQVLGKIKDISFGVIAAPLIIIIMMWASILDQRTFKKELDRK
                     KAQEKT"
                     /name="heme exporter protein CcmD"
     gene            1617..2033
                     /locus_tag="FDF20_RS20915"
                     /old_locus_tag="FDF20_20915"
     CDS             1617..2033
                     /locus_tag="FDF20_RS20915"
                     /old_locus_tag="FDF20_20915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002061210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein TraD"
                     /protein_id="WP_025464995.1"
                     /translation="MNNDWLSEKITYISALKNPSDAQKLLLELAKIQYRTPDQEKKINA
                     LIKAEKAIDRANKQKVAVRKLLNAEKEAERKARTRHLIQLGALFEIANLDQRDPAELLG
                     ILLKTAEIDPNDMKWQIWKELGQETLNHRKKDKK"
                     /name="conjugal transfer protein TraD"
     gene            2194..2691
                     /locus_tag="FDF20_RS21095"
     CDS             2194..2691
                     /locus_tag="FDF20_RS21095"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_031380830.1"
                     /translation="MATAIRADYCTNMTINNCSFSGFNNCIEMNFCTNFNILGSGFFNS
                     NNAVFLSNCYGKGAISNNYTHNVNNLISVADSKLKYPLPSKNKEKHKIIKKEQKKNSSI
                     RNIEFNKKIKELINLEANQKFIKRNHQLACKIKYIKANLGKLEAESLLFLTQALMQYDL
                     QS"
                     /name="hypothetical protein"
     gene            complement(3183..3962)
                     /locus_tag="FDF20_RS20920"
                     /old_locus_tag="FDF20_20920"
     CDS             complement(3183..3962)
                     /locus_tag="FDF20_RS20920"
                     /old_locus_tag="FDF20_20920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000422636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="APH(3')-VI family aminoglycoside
                     O-phosphotransferase"
                     /protein_id="WP_002011642.1"
                     /translation="MELPNIIQQFIGNSVLEPNKIGQSPSDVYSFNRNNETFFLKRSST
                     LYTETTYSVSREAKMLSWLSEKLKVPELIMTFQDEQFEFMITKAINAKPISALFLTDQE
                     LLAIYKEALNLLNSVAIIDCPFISNIDHRLKESKFFIDNQLLDDIDQDDFDAELWGDHK
                     TYLSLWNELTETRVEERLVFSHGDITDSNIFIDKFNEIYFLDLGRAGLADEFVDISFVE
                     RCLREDASEETAKIFLKHLKNDRPDKRNYFLKLDELN"
                     /name="APH(3')-VI family aminoglycoside
                     O-phosphotransferase"
     gene            complement(4898..5113)
                     /locus_tag="FDF20_RS20925"
                     /old_locus_tag="FDF20_20925"
     CDS             complement(4898..5113)
                     /locus_tag="FDF20_RS20925"
                     /old_locus_tag="FDF20_20925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002011639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_002011639.1"
                     /translation="MQNELERYKNFDPTNAPLVKPSFVKKLQERHTIAQAQAFDADVVA
                     WLSSQDNETKQHINDMVRHIMALKRA"
                     /name="hypothetical protein"
     gene            complement(5103..5399)
                     /locus_tag="FDF20_RS20930"
                     /old_locus_tag="FDF20_20930"
     CDS             complement(5103..5399)
                     /locus_tag="FDF20_RS20930"
                     /old_locus_tag="FDF20_20930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004282231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BrnT family toxin"
                     /protein_id="WP_002011632.1"
                     /translation="MPLIEYYGLLFEWHDQKMDLVYRGREITFEEVCSIFLDPALISFE
                     DVGHYDEQRLISVGLSNRGRLLTVVWVERGDVARIITAFEPSHHQKRRYSNAK"
                     /name="BrnT family toxin"
     ARG             complement(3187..3962)
                     /name="aph(3')-VI"
                     /gene="aph(3')-VI"
                     /gene_name="APH(3')-VI family aminoglycoside
                     O-phosphotransferase"
                     /tool="amrfinderplus"
                     /drug_class="AMINOGLYCOSIDE"
                     /identity="99.23"
                     /coverage="100.0"
     ARG             complement(3187..3962)
                     /name="aph(3')-VIa"
                     /gene="aph(3')-VIa"
                     /gene_name="aminoglycoside O-phosphotransferase
                     APH(3')-VIa"
                     /tool="amrfinderplus"
                     /drug_class="AMINOGLYCOSIDE"
                     /identity="99.23"
                     /coverage="100.0"
     Typing          complement(260..1179)
                     /name="MOBQ"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 tccatgaaaa ttgatcacta gttgattcaa tcgagttttt taaatgtcca agtgccttag
       61 cggtcttgat aagctctgct gtaccctcct gtaagcccgt atttagcgat tttgatacag
      121 tgctatgggt ttgctctgcg atgaccttct gaatgtgttc tttcgtgatt tgaagctctt
      181 taacggcctg attgactagg ttctgctgtt gttctgcaac tgccatcagt gcatataatt
      241 ttttttcatc aggtgtcatc ggctcatccc tctaaacttc attgttttct gttgctctcg
      301 ttctaatttc tgctgttctt tgtactgctg taaggcaagc tgtttaaagc tggcaaaatc
      361 agccttaaaa ctctcaatgc cctgtttaat ttctttgtct gagatagggc tgtttttgag
      421 gtctttcagg tcgtttttag ggtcgcctaa atctagtcgc tcaagctctt tataggctgt
      481 acgtgactgt tgcaaggctt ccctgatttc agggtctttg gcttggcttg gtaagagttt
      541 cttttcaggg tctttctcta tgccttgctc tttgtagctt cgcatatcaa tacggctgtc
      601 aatttggtgt ttttccaaat ggctattgca taaatccgcc cacctttggc gtaggtcttt
      661 aatatcagtt tttcgttcct ggtaactctt gcctgtattg tcttttttag ctccgccacg
      721 ttcaggattc ttgctgttat agcgtttgaa atattgctct ggatctcgtt cgattccatc
      781 ttgcagacgt tcattaaaca tgaggtggat gtggggctga tcgttgccgt ccattgcttt
      841 agggttatga attgcaaact gatacggata ttttgagcca atttcagact gaataaagtc
      901 ttcaaccagt tctaggcgtt gctcagcatt catctctcta ggcagggcaa tttcatattc
      961 tcgataggta ctgccatttt tacgctcgta aaggtcggct gcttgccaaa aggtaatcgg
     1021 attatgttca gcccatttcg gcatatttcc atagtcacta tgttcaaggt cggattgttc
     1081 ctgtttcagc tttttttctt cgtcccgatc aatatattcg gcatgcggtg ctgccttacc
     1141 tgccttacca actttcacac ttaaacgagc tatcgccatt aggttttttc ctgtgccttt
     1201 tttcggtcta gttctttctt aaatgttctt tgatcgagta tcgaagccca catcataatg
     1261 atgataatta gcggtgctgc gatcacgcca aaactaatat ctttgatttt tcccaatacc
     1321 tgttttagtt gcatgctgtt gctcctagct ttggtacttc tttttttttc attcaatttt
     1381 caattgaacg aaaaaaagaa gtttcagggt tttagggatg aagtccctaa cgtgcttagg
     1441 tttctcaatg aaattgagaa acgtctaagc gcgccatcaa atttttgatg gaagtacagg
     1501 cgataatctc cagaacgact ttaacaaaat tacgttactc gaacgtaaat attttgttat
     1561 cgttctttga gtattgagcc tgtgcttttg cggtatatga attaatggaa ttgaatatga
     1621 ataatgattg gctgtctgaa aaaatcacat atatttctgc tttaaagaat cctagtgatg
     1681 ctcaaaaact tttacttgaa ttagccaaaa ttcagtacag aacacccgac caagagaaaa
     1741 aaatcaatgc cttgatcaaa gctgaaaaag ccatagatcg agcaaataag caaaaagttg
     1801 cagttagaaa attattgaat gccgaaaagg aagcagaacg taaagctcgt acacgtcatc
     1861 tcattcaatt aggcgcacta tttgaaatag ctaacctaga tcagcgtgac ccagccgaat
     1921 tacttggcat tcttctaaaa actgctgaaa ttgatcctaa tgatatgaaa tggcaaattt
     1981 ggaaagagct aggacaagaa actttaaatc atcgtaaaaa agacaaaaag tgattgttca
     2041 gaatttttat tcaactttat ctaagcacgt aaaaaactca tctatataca gagggtctaa
     2101 aaattatatt tttgatttat aaagataatt aaagattact ttgcataagg tgtattatct
     2161 taataataag gcaactaagg taggatgaat tttatggcga ctgcaattcg tgcagattat
     2221 tgtacaaata tgactataaa caattgctct ttttcagggt ttaacaattg tatagagatg
     2281 aacttttgta ctaacttcaa tatattaggt agtggttttt ttaattctaa taatgctgtc
     2341 tttttatcta attgctacgg aaaaggagct atatcaaaca actatactca taatgtaaat
     2401 aatttaattt cagttgctga ttcaaaacta aaataccctc ttccttcaaa aaataaggaa
     2461 aagcataaaa tcataaaaaa agagcagaag aaaaatagtt caataaggaa tatagaattt
     2521 aataaaaaaa ttaaagaact tattaactta gaagctaacc aaaaatttat taagagaaat
     2581 catcagttag cttgtaaaat aaaatatata aaagcaaatc ttggaaaatt agaagctgaa
     2641 agccttcttt tcttgactca agcattaatg cagtacgatc ttcaaagtta agatgatggt
     2701 atgacaattt tatatactcc ataaaccctt taaattaatt aggtggttta tgtcgcactt
     2761 caagttttac tctgccaagt attgatatta ttaaagctct taagataatt taacattcgt
     2821 catttcccat aagaatttaa taaaatacta tatggctgac agatagataa aagactaaga
     2881 aaagaaaagc agacaaaaaa ataccatcga taataaaatt ggttaaaaat gttgcacgat
     2941 gaaatttaaa taaacttgca aagctaataa attaacactt ttatattcaa aaaaacttaa
     3001 atcacaagtt aagctaataa acagttttag ctattttaaa taagctcatt ttaaaaacca
     3061 aaatttagat ttattggtga tataaaactt taaatcaata gctccactaa cgctcttcac
     3121 ttatttattt aaaatttagc gacgtaaaaa gacaattaag tatttttaga taatgcttgg
     3181 aatcaattca attcatcaag ttttaaaaaa taattccttt tgtcaggtct atcatttttt
     3241 aaatgcttta aaaatatttt agcagtttcc tccgatgcat cctctcttag gcaacgttca
     3301 acaaaggata tatctacaaa ttcatctgct aacccagcac ggccaagatc taaaaaataa
     3361 atttcattga atttatctat aaaaatatta ctatccgtga tatcgccatg agaaaaaacc
     3421 aatctttctt caacacgagt ctcagttaac tcattccata gacttaggta agttttatgg
     3481 tctccccata attcagcgtc aaaatcatct tgatctatat cgtcaaggag ttggttatca
     3541 ataaaaaatt ttgactcttt taaccgatga tcaatgtttg aaataaatgg acaatcaata
     3601 atagcaactg aatttaacag attgagtgcc tccttataga tagcaagcaa ttcttggtct
     3661 gttaaaaaaa gcgctgaaat tggttttgca ttgatcgctt tagtgatcat gaattcaaac
     3721 tgctcatcct gaaaagtcat gatgagttca ggcaccttta atttctcaga gagccaactc
     3781 aacattttcg cttcgcgaga gacactgtat gtggtctctg tatataaagt gctagatcgc
     3841 ttaagaaaaa aagtttcatt atttcgatta aaagaataaa catccgatgg cgactgacca
     3901 attttatttg gctctaaaac actgtttcca ataaattgtt gaataatatt gggcaattcc
     3961 atcaagtttt ccttttattc agcattaaaa ccccgcaaat gcaaggccta gtaaatagat
     4021 gatcttaatt tggttcactg tagcaaaaat atggggcgaa ttcaaaactg gttcaatagc
     4081 ctaagcagaa aaaggagtat ttgattatcc gcactactat acttcctaaa aaaaaatgct
     4141 ctcaacttct caactcgtac ccaaagcgtc gcacttcgtg ctttggcttt ggaaacggtt
     4201 gagagagttt cggcaatact ctccctaaag gcggtcattt aaaaaaatga cgcatccttt
     4261 aagtattgcc gatttaccgc atattctttt ggcttcggag ccacgtatat cggtcgtatc
     4321 cgcacatagc tttgcaaact atgcagacaa ggactaaagg tcttgcacct ctccccacac
     4381 gctccctgtc gaagtatggc ggtatctctg cgagggtttc cccaacatac aacttaacca
     4441 acctatacaa ctactcttaa cgctccgctt ttgtgagatt cccctgtagc ggtttagcct
     4501 ttcgactatc gctacgttgc accagtgaca cttattccct ccacatgcaa cgcatgccaa
     4561 tccgtaaaac ggacacgcag gagcaggcaa agctcgatct aggatgctta tttgatgatt
     4621 taaaacacgg attaacgaag acttatcatt ttgagtcttg atctaaacac tgtttattgt
     4681 gaaaatagag ttcaggtaca agcctttgtg tgaaatctgc acgagttggt agctctgctg
     4741 atcttcgtta cttgatgttc caccatcaaa taactgcgta ccgctgaata taaagcgaaa
     4801 gcccattgag ttgcaagatt caatgggctt tttctttgat caatcagata ttaagacaaa
     4861 aaagagaggt catatctaat catgactaaa tccctaatca agcacgtttc aatgccataa
     4921 tatggcgaac catatcgtta atatgttgtt ttgtttcatt atcttgtgaa cttaaccatg
     4981 caactacatc agcatcaaaa gcctgtgctt gagctatggt atggcgttcc tgtaatttct
     5041 tcacaaagct aggtttaacc aatggcgcat tggtagggtc aaaattttta tagcgttcta
     5101 gttcattttg cattgctgta cctccgcttt tggtgatgtg atggttcaaa tgcagtgatt
     5161 attctcgcaa catctccacg ttcaacccaa accactgtta atagtctacc acgattgctt
     5221 aaaccgactg atattagtcg ttgttcatca tagtgtccta catcctcaaa agagatcaat
     5281 gcaggatcaa ggaaaatact acagacctcc tcgaacgtga tttctcgccc tcgatagact
     5341 aaatccattt tttggtcatg ccattcaaat aacaagccgt aatattcaat taatggcatg
     5401 attacctctt ttcctctcgt gaaataaaaa atatgcctat tattttgggt ctatgacaca
     5461 aaaatctcca ttttttccat atccgcactg ctttttcatc acacgaacac acggtttaga
     5521 ttcctctcca acagtacagc ttccaatatc aaactggata ccttgctgtc ttaagctctc
     5581 gatctgaggg atattttcta aaggtttgat ataaacactg aataaccaaa tgatgccaag
     5641 catcagaata gcgaaaatgc ctaaaataat ggtgatgatt t
//
