LOCUS       NZ_CP038250             2905 bp    DNA     circular CON 29-OCT-2023
DEFINITION  Staphylococcus warneri strain GD01 plasmid p8GD01, complete
            sequence.
ACCESSION   NZ_CP038250
VERSION     NZ_CP038250.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10687116
            Assembly: GCF_007833855.1
KEYWORDS    RefSeq.
SOURCE      Staphylococcus warneri
  ORGANISM  Staphylococcus warneri
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus.
REFERENCE   1  (bases 1 to 2905)
  AUTHORS   Liu,C. and Fu,Q.
  TITLE     Whole genome sequence and comparative genome analysis of
            Staphylococcus warneri strain GD01 isolated from diseased porcine in
            China
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2905)
  AUTHORS   Liu,C. and Fu,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-MAR-2019) School of Life Science and Engineering,
            Foshan University, No. 33, Guang Yun Road, Shishan Town, Nanhai
            District, Foshan, Guangdong 528225, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method :: SOAPdenovo v. 2.4; Celera Assembler v. 8.0
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 555.0x
            Sequencing Technology             :: Illumina HiSeq; PacBio
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 10/29/2023 02:55:38
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,508
            CDSs (total)                      :: 2,422
            Genes (coding)                    :: 2,387
            CDSs (with protein)               :: 2,387
            Genes (RNA)                       :: 86
            rRNAs                             :: 7, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 7, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 63
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 16 of 35
            Pseudo Genes (incomplete)         :: 12 of 35
            Pseudo Genes (internal stop)      :: 11 of 35
            Pseudo Genes (multiple problems)  :: 4 of 35
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP038250.1.
            Bacteria and source DNA available from China.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2905
                     /organism="Staphylococcus warneri"
                     /mol_type="genomic DNA"
                     /strain="GD01"
                     /isolation_source="muscle abscess tissue"
                     /host="porcine"
                     /db_xref="taxon:1292"
                     /plasmid="p8GD01"
                     /geo_loc_name="China: Guangdong"
                     /collection_date="2017-12-01"
                     /collected_by="foshan university"
     gene            complement(180..485)
                     /locus_tag="EOJ31_RS12470"
     CDS             complement(180..485)
                     /locus_tag="EOJ31_RS12470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002490323.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_031925506.1"
                     /translation="MIFIYIIFSAILLYYALKYGIRNGFVDLEANKDGLVYYKKSASLL
                     EEIGNIYSRVSTSKSKEAKAVYNEAFDILLSEKKPKIIFKELTEKKEEILKLSIDD"
                     /name="hypothetical protein"
     gene            complement(664..981)
                     /locus_tag="EOJ31_RS12475"
     CDS             complement(664..981)
                     /locus_tag="EOJ31_RS12475"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_189723693.1"
                     /translation="MGTTQDVAGTFWVRNEKKYTFVKSLYPLKCLASPDHTFFNVCKFP
                     LCSYKEFGANSKFGGFLKKIAPAGTKKVDDFLSHYMQNFSLHVTGQCLKIVTGFAKVFM
                     R"
                     /name="hypothetical protein"
     gene            complement(1091..2014)
                     /locus_tag="EOJ31_RS12480"
     CDS             complement(1091..2014)
                     /locus_tag="EOJ31_RS12480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002499696.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /GO_process="GO:0006260 - DNA replication [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_189723695.1"
                     /translation="MEKYTEKKRRNQVFKKLIERHIGDNQMDLVENCNTFLSFVTNRRM
                     DKKKLYKSNPCKNRFCPMCAWRKARKDALGLSLMMQHIKQTEDKQFIFLTLTTPNVTSE
                     HLENEIKIYNKSFKKMFERKKVRTITKGYVRKLEITYNKKRDDYNPHFHVLIAVNKSYF
                     TDKRYYISQKEWLEMWRDVTGNSEITQVHIQKVKQNNNKELYEMAKYSGKDNDYLINQK
                     VFDAFYKALKGKQVLVYSGLFKDARKKLKNGELDYLKEVDPTEYIYQIFYTWNKKEYLA
                     SEIFDLTESEKQEINHQMIDEIEEEK"
                     /name="protein rep"
     gene            2457..2903
                     /locus_tag="EOJ31_RS12485"
     CDS             2457..2903
                     /locus_tag="EOJ31_RS12485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017001147.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="WP_189723692.1"
                     /translation="MKFHEKLKQERKKLNLSQEDLANKINISRQSISKWELEKGYPNIE
                     TLIELSELFDITVDELLKGDDFLKDKIVEDGKKLKHPLLFNLGEVIGLLGIIILISNFV
                     LRGIRLATHQDILPFLQSNLVTTIAIIFLLISWLTYETLGKSYK"
                     /name="helix-turn-helix transcriptional regulator"
     Typing          complement(1094..2014)
                     /name="rep_cluster_2133"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="84.432"
                     /coverage="99.0"
                     /evalue="0.0"
ORIGIN
        1 tattgcttta ttccaattgc tttattgacg ttgagcctcg gaacccttaa caatcccaaa
       61 acttgtcgaa tggtcggctt aatagctcac gctatgccga cattcgtctg caagtttagt
      121 taagggttct tctcaacatc aataaatttt ctcggcataa atgcgtcatt taaagctagt
      181 taatcatcta tacttaattt taaaatttct tcttttttct cagttaattc tttaaatata
      241 atttttggct ttttttcaga aagcaatatg tcaaaagcct cattatagac agctttcgct
      301 tctttagatt tagatgtaga aactctacta taaatatttc ctatctcttc aagtaaacta
      361 gcgctttttt tatagtaaac taagccgtct ttattcgctt caaggtcaac aaaaccattt
      421 ctaattccat attttaaagc gtaataaagt aaaatagccg aaaatattat atatataaat
      481 atcaaattaa tacctccttt tttaaaaaac tttatcacaa gaactatttg aattttaaat
      541 gcctctattt tgaattttaa gggggcattt taaagattta ggggtaaatc atatagtttt
      601 atacctaaac acttacataa gctcttaaaa cacaaatatg agccaaataa atatattttg
      661 acttcacctc ataaaaactt tagcaaaacc agtgacgatt tttagacact gcccagttac
      721 atgcaaacta aaattttgca tataatggct caaaaaatca tcaacttttt tagttcctgc
      781 aggagcaatt tttttcaaaa aaccaccgaa ttttgaattg gctccaaatt ctttgtaaga
      841 gcataaggga aatttgcata cattaaaaaa tgtatggtct ggcgaagcca gacatttcaa
      901 aggatacaag gattttacaa aagtatactt tttttcgttt cgtacccaga atgtacccgc
      961 aacatcttgt gttgtaccca aaatgtaccc acaagatatt acatctgtac ccaaaatgta
     1021 cccagacgtt ttttgacact tttcaataaa aaaacgctag ctttttgcta acgtttaaga
     1081 aaatttattt ttatttttct tcttcaattt catcaatcat ttgatgatta atttcttgtt
     1141 tttcactttc tgttaaatca aaaatttcac tcgctaaata ctctttttta ttccaagtat
     1201 aaaaaatttg ataaatatat tcggtcggat ccacttcttt taagtaatct aattctccat
     1261 tttttaattt ctttcttgcg tctttaaaca gtccagaata aacaagaact tgttttcctt
     1321 ttaacgcttt ataaaatgcg tcgaacactt tttgattaat taaatagtca ttatccttac
     1381 cagaatattt agccatttcg taaagttctt tattattatt ttgtttaact ttttgtatat
     1441 gtacttgtgt gatttctgaa tttcctgtga catcacgcca catttctagc cattcttttt
     1501 ggctaatata atatcgttta tccgtaaaat atgatttatt aacggcaatc aatacatgaa
     1561 aatgtgggtt ataatcatca cgctttttgt tataagtgat ttctaatttt ctcacataac
     1621 cttttgtaat tgttctcact tttttacgtt caaacatttt cttaaaagat ttattataaa
     1681 tttttatttc gttttctaaa tgctcacttg ttacgtttgg cgtcgtaagt gttaaaaaaa
     1741 tgaattgttt atcttctgtt tgcttaatat gctgcatcat caatgacaaa cctaatgcat
     1801 cttttctcgc ttttcgccat gcacacatcg gacaaaagcg atttttacat gggttagatt
     1861 tatataattt tttcttatcc attcttcgat tcgtcacaaa agataagaac gtattacaat
     1921 tttcaactaa atccatttga ttatccccaa tatgacgttc aattaatttt ttaaatactt
     1981 gatttcttcg ttttttctca gtatactttt ccatacaata aatcacataa aacaactttg
     2041 ttttaaacaa aattttaagc cgataaaaaa agttgctttt tctcctttct atgtatgttt
     2101 tttactagtc atttaaaacg atacattaat aggtacgaaa aagcaacttt ttttatgctt
     2161 aaagccagtc atatcaatgg aataaaggta attatttcaa atcgaaatag ttacccttat
     2221 tatcaagaca agaagaaact cgttttcaac tcgtttctaa aaccctaaat aaagtcataa
     2281 atcattattt ttatttatga ctttatttag ggttttattt atatctttat ttacaaatat
     2341 acttagtaat atatttaaat caccttaatg caactttaca gttacatatt gcaaccatcg
     2401 tattcttata atcatcccta aaaagtttta aatttaaaac acaggaggat aacctaatga
     2461 aattccacga aaaacttaaa caagaaagaa aaaaacttaa tttatctcaa gaagatctag
     2521 caaataaaat taatatcagc agacaatcta tatcaaaatg ggaacttgaa aaaggttatc
     2581 caaatatcga aacacttata gaactaagcg aactatttga tattactgta gatgaactgc
     2641 taaaaggaga tgattttttg aaagataaaa tcgttgaaga cggtaagaaa ctaaaacacc
     2701 ccctgctttt taatcttggg gaagtcatag gattattagg tataattatt ttaatctcca
     2761 attttgtact aagaggcatt cgattagcta cacatcaaga tatactgcct tttttacaaa
     2821 gtaatctagt taccactata gcaatcatat ttttactaat aagttggcta acttatgaaa
     2881 cacttggaaa aagttataaa tagtt
//
