LOCUS       NZ_CP038249             4439 bp    DNA     circular CON 29-OCT-2023
DEFINITION  Staphylococcus warneri strain GD01 plasmid p7GD01, complete
            sequence.
ACCESSION   NZ_CP038249
VERSION     NZ_CP038249.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10687116
            Assembly: GCF_007833855.1
KEYWORDS    RefSeq.
SOURCE      Staphylococcus warneri
  ORGANISM  Staphylococcus warneri
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus.
REFERENCE   1  (bases 1 to 4439)
  AUTHORS   Liu,C. and Fu,Q.
  TITLE     Whole genome sequence and comparative genome analysis of
            Staphylococcus warneri strain GD01 isolated from diseased porcine in
            China
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4439)
  AUTHORS   Liu,C. and Fu,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-MAR-2019) School of Life Science and Engineering,
            Foshan University, No. 33, Guang Yun Road, Shishan Town, Nanhai
            District, Foshan, Guangdong 528225, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method :: SOAPdenovo v. 2.4; Celera Assembler v. 8.0
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 555.0x
            Sequencing Technology             :: Illumina HiSeq; PacBio
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 10/29/2023 02:55:38
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,508
            CDSs (total)                      :: 2,422
            Genes (coding)                    :: 2,387
            CDSs (with protein)               :: 2,387
            Genes (RNA)                       :: 86
            rRNAs                             :: 7, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 7, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 63
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 16 of 35
            Pseudo Genes (incomplete)         :: 12 of 35
            Pseudo Genes (internal stop)      :: 11 of 35
            Pseudo Genes (multiple problems)  :: 4 of 35
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP038249.1.
            Bacteria and source DNA available from China.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4439
                     /organism="Staphylococcus warneri"
                     /mol_type="genomic DNA"
                     /strain="GD01"
                     /isolation_source="muscle abscess tissue"
                     /host="porcine"
                     /db_xref="taxon:1292"
                     /plasmid="p7GD01"
                     /geo_loc_name="China: Guangdong"
                     /collection_date="2017-12-01"
                     /collected_by="foshan university"
     gene            2..1381
                     /gene="tet(K)"
                     /locus_tag="EOJ31_RS12455"
     ARG             3..1378
                     /name="tet(K)"
                     /gene="tet(K)"
                     /gene_name="tetracycline efflux MFS transporter Tet(K)"
                     /tool="amrfinderplus"
                     /drug_class="TETRACYCLINE"
                     /identity="100.0"
                     /coverage="100.0"
     gene            1567..2808
                     /gene="mobV"
                     /locus_tag="EOJ31_RS12460"
     CDS             1567..2808
                     /gene="mobV"
                     /locus_tag="EOJ31_RS12460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010889940.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /GO_process="GO:0006310 - DNA recombination [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobV family relaxase"
                     /protein_id="WP_000122374.1"
                     /translation="MSYSIVRVSKVKSGTNTTGIQKHVQRENNNYENEDIDHSKTYLNY
                     DLVNANKQNFNNLIDEKIEQNYTGKRKIRTDAIKHIDGLITSDNDFFDNQTPEDTKQFF
                     EYAKEFLEQEYGKDNLLYATVHMDEKTPHMHYGVVPITDDGRLSAKEVVGNKKALTAFQ
                     DRFNEHVKQRGYDLERGQSRQVTNAKHEQISQYKQKTEYHKQEYERESQKTDHIKQKND
                     KLMQEYQKSLNTLKKPINVPYEQETEKVGGLFSKEIQETGNVVISQKDFNEFQKQIKAA
                     QDISEDYEYIKSGRALDDKDKEIREKDDLLNKAVERIENADDNFNQLYENAKPLKENIE
                     IALKLLKILLKELERVLGRNTFAERVNKLTEDEPKLNGLAGNLDKKMNPELYSEQEQQQ
                     EQQKNQKRDRGMHL"
                     /name="mobV"
     gene            3335..4279
                     /locus_tag="EOJ31_RS12465"
     CDS             3335..4279
                     /locus_tag="EOJ31_RS12465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000277654.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA];
                     GO:0003916 - DNA topoisomerase activity [Evidence IEA]"
                     /GO_process="GO:0006270 - DNA replication initiation
                     [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation factor domain-containing
                     protein"
                     /protein_id="WP_000277654.1"
                     /translation="MYKNNHANHSNHLENHDLDNFSKTGYSNSRLDAHTVCISDPKLSF
                     DAMTIVGNLNRDNAQALSKFMSVEPQIRLWDILQTKFKAKALQEKVYIEYDKVKADSWD
                     RRNMRIEFNPNKLTRDEMIWLKQNIISYMEDDGFTRLDLAFDFEDDLSDYYAMSDKAVK
                     KTIFYGRNGKPETKYFGVRDSNRFIRIYNKKQERKDNADAEVMSEHLWRVEIELKRDMV
                     DYWNDCFSDLHILQPDWKTIQRTADRAIVFMLLSDEEEWGKLHRNSRTKYKNLIKEISP
                     VDLTDLMKSTLKANEKQLQKQIDFWQHEFKFWK"
                     /name="replication initiation factor domain-containing
                     protein"
     Typing          3336..4279
                     /name="rep_cluster_1118"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="0.0"
     Typing          1568..2805
                     /name="MOBV"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 attgtttagt ttatataaaa aatttaaagg tttgttttat agcgttttat tttggctttg
       61 tattctttca ttttttagtg tattaaatga aatggtttta aatgtttctt tacctgatat
      121 tgcaaatcat tttaatacta ctcctggaat tacaaactgg gtaaacactg catatatgtt
      181 aactttttcg ataggaacag cagtatatgg aaaattatct gattatataa atataaaaaa
      241 attgttaatt attggtatta gtttgagctg tcttggttca ttgattgctt ttattggtca
      301 caatcacttt tttattttga tttttggtag gttagtacaa ggagtaggat ctgctgcatt
      361 cccttcactg attatggtgg ttgtagctag aaatattaca agaaaaaaac aaggcaaagc
      421 ctttggtttt ataggatcaa ttgtagcttt aggtgaaggg ttaggtcctt caataggggg
      481 aataatagca cattatattc attggtctta cctacttata cttcctatga ttacaatagt
      541 aactatacct tttcttatta aagtaatggt acctggtaaa tcaacaaaaa atacattaga
      601 tatcgtaggt attgttttaa tgtctataag tattatatgt tttatgttat ttacgacaaa
      661 ttataattgg acttttttaa tactcttcac aatctttttt gtgattttta ttaaacatat
      721 ttcaagagtt tctaaccctt ttattaatcc taaactaggg aaaaacattc cgtttatgct
      781 tggtttgttt tctggtgggc taatattttc tatagtagct ggttttatat caatggtgcc
      841 ttatatgatg aaaactattt atcatgtaaa tgtagcgaca ataggtaata gtgttatttt
      901 tcctggaacc atgagtgtta ttgtttttgg ttattttggt ggttttttag tggatagaaa
      961 aggatcatta tttgttttta ttttaggatc attgtctatc tctataagtt ttttaactat
     1021 tgcatttttt gttgagttta gtatgtggtt gactactttt atgtttatat ttgttatggg
     1081 cggattatct tttactaaaa cagttatatc aaaaatagta tcaagtagtc tttctgaaga
     1141 agaagttgct tctggaatga gtttgctaaa tttcacaagt tttttatcag agggaacagg
     1201 tatagcaatt gtaggaggtt tattgtcact acaattgatt aatcgtaaac tagttctgga
     1261 atttataaat tattcttctg gagtgtatag taatattctt gtagccatgg ctatccttat
     1321 tattttatgt tgtcttttga cgattattgt atttaaacgt tctgaaaagc agtttgaata
     1381 gttatattat attttggttt agaactatga gtggctagca ttttgccact cattttttgc
     1441 gttagcaaaa acaggtttaa gcctcgcaga gcacacgtat taacgactta ttaaaaataa
     1501 gtctagtgtg ttagacttaa actattaaat acacatgaaa cctttgtgct taggagtgat
     1561 ttttatatgt cttattccat tgttagagtt tcaaaagtta aatctggaac aaatacaacg
     1621 ggcatacaaa aacatgttca aagagaaaat aataattatg aaaatgaaga tatagaccat
     1681 agtaaaactt acttaaatta tgatttggta aatgctaata aacagaattt taataacttg
     1741 attgatgaaa aaatcgaaca gaattataca ggcaaaagaa aaattagaac agacgcgatt
     1801 aaacacattg atggtttaat tacatcagac aatgatttct ttgataatca aacgccagaa
     1861 gatacaaagc agttttttga atatgctaaa gagtttttag aacaagaata cggtaaagat
     1921 aatttattat atgcaacagt tcacatggac gaaaaaacac cacatatgca ttatggcgtt
     1981 gttccaataa ctgatgatgg tcgtttaagt gctaaagaag ttgtaggtaa taaaaaagct
     2041 ttaacagcgt ttcaagatag atttaatgag catgttaaac aacgaggata tgatttagaa
     2101 cgtgggcaat caagacaagt aacaaatgct aaacatgagc aaataagtca gtataaacaa
     2161 aaaacagaat atcataagca agaatatgaa cgtgagagcc aaaaaacaga ccatataaag
     2221 caaaagaacg ataaattaat gcaagagtac caaaaatcgt taaatacgct taaaaagcct
     2281 ataaatgttc cgtatgagca agaaactgaa aaagtaggtg gtttatttag caaagaaata
     2341 caagaaactg gaaatgttgt aataagccaa aaagatttca atgaatttca gaaacagata
     2401 aaagctgctc aagatatttc ggaagattac gagtatataa agtctggtag agccttagat
     2461 gataaagata aggaaatacg agagaaagat gatttattaa ataaagcagt tgagcgtatt
     2521 gaaaacgcag acgataattt taaccaactt tacgaaaatg caaagccact taaagagaat
     2581 atagaaatag cgttaaagct tttaaaaatc ttactaaaag agttagaacg agttttagga
     2641 agaaatacct ttgcggaaag agttaataag ttaacagaag atgaaccaaa actaaatggt
     2701 ttagcaggaa acttagataa aaaaatgaat ccagaattat attcagaaca ggaacagcaa
     2761 caagaacaac aaaagaatca aaaacgagat agaggtatgc acttatagaa catgcattta
     2821 tgccgagaaa acttattggt tggaatgggc tatgtgttag ctaacttgtt agcgagttgg
     2881 ttggacttga attgggatta atcccaagaa agtaccaact caacaacaca taaagccctg
     2941 taggttccga ccaataagga aattggaata aagcaataaa aggagttgaa gaaatgaaat
     3001 tcagagaagc ctttgagaat tttataacaa gtaagtatgt acttggtgtt ttagtagttt
     3061 taactgttta ccagataata caaatgctta aataaaaaaa gacttgatct gattagacca
     3121 agtcttttga tagtgttata ttaataacaa aataaaaagg agtcgctcac gccctgacca
     3181 aagtttgtga acgacatcat tcaaagaaaa aaacactgag ttgtttttat aatcttgtat
     3241 atttagatat taaacgatat ttaaatatac atcaagatat atatttgggt gagcgattcc
     3301 ttaaacgaaa ttgagattaa ggagtcgatt ttttatgtat aaaaacaatc atgcaaatca
     3361 ttcaaatcat ttggaaaatc acgatttaga caatttttct aaaaccggct actctaatag
     3421 ccggttggac gcacatactg tgtgcatatc tgatccaaaa ttaagttttg atgcaatgac
     3481 gatcgttgga aatctcaacc gagacaacgc tcaagccctt tctaaattta tgagtgtaga
     3541 gccccaaata agactttggg atattcttca aacaaagttt aaagctaaag cacttcaaga
     3601 aaaagtttat attgaatatg acaaagtgaa agcagatagt tgggatagac gtaatatgcg
     3661 tattgaattt aatccaaaca aacttacacg agatgaaatg atttggttaa aacaaaatat
     3721 aataagctac atggaagatg acggttttac aagattagat ttagcctttg attttgaaga
     3781 tgatttgagt gactactatg caatgtctga taaagcagtt aagaaaacta ttttttatgg
     3841 tcgtaatggt aagccagaaa caaaatattt tggcgtgaga gatagtaata gatttattag
     3901 aatttataat aaaaagcaag aacgtaaaga taatgcagat gctgaagtta tgtctgaaca
     3961 tttatggcgt gtagaaatcg aacttaaaag agatatggtg gattactgga atgattgctt
     4021 tagtgattta catatcttgc aaccagattg gaaaactatc caacgcactg cggatagagc
     4081 aatagttttt atgttattga gtgatgaaga agaatgggga aagcttcaca gaaattctag
     4141 aacaaaatat aagaatttga taaaagaaat ttcgccagtc gatttaacgg acttaatgaa
     4201 atcgacttta aaagcgaacg aaaaacaatt gcaaaaacaa atcgattttt ggcaacatga
     4261 atttaaattt tggaaatagt gtacatatta atattactga acaaaaatga tatatttaaa
     4321 ctattctaat ttaggaggat ttttttatga agtgtctatt taaaaatttg gggaatttat
     4381 atgaggtgaa agaataattt acccctataa actttagtca cctcaagtaa agaggtaaa
//
