LOCUS       NZ_CP038248             4525 bp    DNA     circular CON 29-OCT-2023
DEFINITION  Staphylococcus warneri strain GD01 plasmid p6GD01, complete
            sequence.
ACCESSION   NZ_CP038248
VERSION     NZ_CP038248.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10687116
            Assembly: GCF_007833855.1
KEYWORDS    RefSeq.
SOURCE      Staphylococcus warneri
  ORGANISM  Staphylococcus warneri
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus.
REFERENCE   1  (bases 1 to 4525)
  AUTHORS   Liu,C. and Fu,Q.
  TITLE     Whole genome sequence and comparative genome analysis of
            Staphylococcus warneri strain GD01 isolated from diseased porcine in
            China
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4525)
  AUTHORS   Liu,C. and Fu,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-MAR-2019) School of Life Science and Engineering,
            Foshan University, No. 33, Guang Yun Road, Shishan Town, Nanhai
            District, Foshan, Guangdong 528225, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method :: SOAPdenovo v. 2.4; Celera Assembler v. 8.0
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 555.0x
            Sequencing Technology             :: Illumina HiSeq; PacBio
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 10/29/2023 02:55:38
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,508
            CDSs (total)                      :: 2,422
            Genes (coding)                    :: 2,387
            CDSs (with protein)               :: 2,387
            Genes (RNA)                       :: 86
            rRNAs                             :: 7, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 7, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 63
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 16 of 35
            Pseudo Genes (incomplete)         :: 12 of 35
            Pseudo Genes (internal stop)      :: 11 of 35
            Pseudo Genes (multiple problems)  :: 4 of 35
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP038248.1.
            Bacteria and source DNA available from China.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4525
                     /organism="Staphylococcus warneri"
                     /mol_type="genomic DNA"
                     /strain="GD01"
                     /isolation_source="muscle abscess tissue"
                     /host="porcine"
                     /db_xref="taxon:1292"
                     /plasmid="p6GD01"
                     /geo_loc_name="China: Guangdong"
                     /collection_date="2017-12-01"
                     /collected_by="foshan university"
     gene            518..1648
                     /locus_tag="EOJ31_RS12430"
     CDS             518..1648
                     /locus_tag="EOJ31_RS12430"
                     /inference="COORDINATES: protein motif:HMM:NF014537.3"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA];
                     GO:0003916 - DNA topoisomerase activity [Evidence IEA]"
                     /GO_process="GO:0006270 - DNA replication initiation
                     [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation factor domain-containing
                     protein"
                     /protein_id="WP_189723690.1"
                     /translation="MINVKVDEFRLTIPFDFKSLGFNDDYIKKTIDLIDRTLNLSKMYG
                     EKQRILGGKDGYDSILVWGRNEKDYIYLMYSLTNPNMKFSLKFGGRALAIYLMQYKYFY
                     NKETNVYEILNKLDAVCSIEIDDELERVRLSRLDIAIDLIDENLIVNDLYKKIVSNEVI
                     VKNKRNSIIKIQRNMGKGVKTETMYFNKRSSNSFLRIYDKKIQQIDTKGIDYNTAINCN
                     NWTRFECELKHEYAHDMTYKIVECGSEQEFLELLVRVFCDCFKFKEKVDYNGDEEILDD
                     TDFYMNIKGLTDNHSKILTSPVRKPLTDFEEKYMNLFENGTMSYFEMFRRAYGDDELDK
                     LFEQIKSDLKTDKVKINDKHIKLVEQNKTAPPFYEL"
                     /name="replication initiation factor domain-containing
                     protein"
     gene            complement(1669..2286)
                     /locus_tag="EOJ31_RS12435"
     CDS             complement(1669..2286)
                     /locus_tag="EOJ31_RS12435"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_189723691.1"
                     /translation="METINYFKTDWVTIKEIYEVILEDKTKYSTIDKLVREIEHNQDNE
                     LINKGEEVKKNSKNRKLVNIKGLDMILEKIIGIDINNIKEEKEDGIVTYHLDNYKIMKN
                     IEKELQKYPSNIDNINFFENLKENINNLENYYKTIIKNKEKHIEDLDKLFGIELAEQED
                     RYDHEKEILNLKIDNLTELLKSSKELNEVYKKERDYFKNLNE"
                     /name="hypothetical protein"
     gene            2437..2751
                     /locus_tag="EOJ31_RS12440"
     CDS             2437..2751
                     /locus_tag="EOJ31_RS12440"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_189723679.1"
                     /translation="MKELTPIEDDNYRIQQLTVHFQDLINKFDELKDMIISENNNGYIH
                     IVAMRNFERLLKEFESLSESSLKGVYQIKMESDRDLRDCKQAYYEDNFDANMYLKNGGK
                     "
                     /name="hypothetical protein"
     gene            2754..3152
                     /locus_tag="EOJ31_RS12445"
     CDS             2754..3152
                     /locus_tag="EOJ31_RS12445"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_189723681.1"
                     /translation="MPMKHLKEFRQFDLDGFLKDKIITVSDIKQNVEYSDGKPTDNIKG
                     TTIVCIIKRDNTKYKGNENKANYEVKTNEDNKFNVKIPSTDIVEIYNRLPKNKPVKLLG
                     VKNANVWGNFQNELSVECDDVVLIERKE"
                     /name="hypothetical protein"
     gene            3149..4525
                     /locus_tag="EOJ31_RS12450"
     CDS             3149..4525
                     /locus_tag="EOJ31_RS12450"
                     /inference="COORDINATES: protein motif:HMM:NF013727.3"
                     /GO_function="GO:0005524 - ATP binding [Evidence IEA];
                     GO:0003677 - DNA binding [Evidence IEA]; GO:0000166 -
                     nucleotide binding [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FtsK/SpoIIIE domain-containing protein"
                     /protein_id="WP_189723688.1"
                     /translation="MMVTTKTVSKRIDLRRKWIGIFVIFPFSLTFAFFVIRYILIKRFA
                     INLPLLNYILIILCVYHVVSVIISFLTVIFDGGFVKHHNILLSIKYHNLKNKIDVAFLK
                     SGIYNQLKNIADNEKIAETPKVKILGDTEIHIENLVGQTDKLEKFKPVLSALLDGGLVC
                     ETLDLDMTQKFFIAILIDLSDENQKIIQNHEEFLNYVKDETSYQLKIMPNFIKDVSKSP
                     HLLIAGETGSGKSYFLYFLIFQLVIKNADVYVIDRKKVITKFKSIIGAENVASEIDSIM
                     QLLEEVYKETKRRESILEKDYPENMDIDFTNVGFNPFYLVIDELGSLIAELDNKQKKAF
                     NDKLQTIAQRGRATGVNIIIAMQHPSHDNLPTSIRSQLTFKTILGNTDDSTRHLLFKAD
                     DMANIKFKKGQGYFTNSGTHNKASILFVPTFKFELNINNLKELIVLNSSRNEQKNNEST
                     "
                     /name="FtsK/SpoIIIE domain-containing protein"
ORIGIN
        1 atcgcaacga agtgagaatt taagagttga ctcattttac tactcgccaa tatgagctgt
       61 tggaattagc ccctgctgat tcccgcagct cgaccggcga gtgtcgaaag tttttagtgt
      121 accttttttc aaaaaggtac ggttttgctt gtttttctgt aagctattca ataaaacatc
      181 tgtatgctaa aataaaaaat aactcaagca attggggttg cttgagtctg tcatttgaat
      241 ttggattcaa agtagttagg tataatttta atatgttttt tgcatttcat ctaaaattat
      301 taggtactaa gagtatatta tatatttggt tatttgtaca tatttgtatt ggaaatttga
      361 agtggagaat cacgaagtga ttcgaaacga aaaatttcca cggggggtat agtaattacc
      421 ccccgtgtca gaatgagacc cccctaccca aaattatacg aaaattgctt taatccttga
      481 tatgacagta ttttaagctg ttggaaggat gataagtttg attaatgtaa aagttgacga
      541 atttagacta actataccct ttgattttaa atctttagga tttaatgatg attatataaa
      601 aaagactatt gatttgattg ataggacttt aaatttgtct aaaatgtatg gagagaaaca
      661 aaggattcta ggtggaaaag atggctatga ttcaatttta gtatggggta gaaatgaaaa
      721 agattatata tatttaatgt attctctaac caatcctaat atgaagtttt ctttaaaatt
      781 tggtggtcgt gcattagcta tatacttaat gcaatataag tatttttata ataaagaaac
      841 taatgtatac gaaatattaa ataaattaga tgctgtatgt agcattgaaa tagatgatga
      901 attagaacgt gttcgtttat ctcgattaga tattgccatt gatttaattg atgaaaattt
      961 aattgtgaat gatttataca agaaaatagt atctaatgaa gttattgtta aaaataaacg
     1021 taattcgatt attaaaatac aaagaaatat gggtaaaggt gttaaaactg aaacaatgta
     1081 ttttaataaa cgttctagta attcattttt gcgtatttat gataagaaaa tacaacagat
     1141 tgatactaaa ggtatagact ataatacagc aattaattgt aataattgga caaggttcga
     1201 gtgcgaatta aagcatgaat atgctcatga tatgacatat aagattgttg aatgtggaag
     1261 tgaacaagaa tttttagaat tgctagttag ggttttctgc gactgtttta agttcaaaga
     1321 aaaagttgat tataatggcg atgaagaaat acttgatgat acagattttt atatgaatat
     1381 taaaggatta actgataatc attctaaaat tttaacatct ccagtaagaa agcctttgac
     1441 tgattttgaa gaaaagtata tgaatttatt tgaaaatggc acgatgagtt attttgaaat
     1501 gtttcgtaga gcttacggag atgatgagtt agataaattg tttgaacaga taaaatcaga
     1561 tttaaaaaca gataaagtaa aaattaatga taagcatata aaattagttg aacagaataa
     1621 aacagcgcca cctttttacg aactgtaaaa agatcggcgt tgttttattt attcgtttaa
     1681 gtttttaaag tagtcacgtt cttttttata tacttcgttt aattcttttg aactttttaa
     1741 aagttcggtt aaattgtcta ttttgagatt taatatttct ttttcatggt catatctatc
     1801 ttcttgttct gctaattcaa ttccaaaaag tttgtctagg tcttcgatgt gcttttcttt
     1861 gtttttaata atcgttttat agtagttttc taaattattt atattttctt ttagattctc
     1921 aaaaaagttg atattatcaa tgtttgatgg atatttttgc aattcttttt ctatattttt
     1981 cattatttta taattgtcta aatgataggt aactatacca tcttcttttt cttcttttat
     2041 gttatttata tcaattccta ttattttttc taatatcata tctaaaccct ttatattaac
     2101 taactttcta tttttactat tttttttgac ctcttctcct ttatttatta gttcattgtc
     2161 ttgattgtgt tctatttctc taactaattt gtctatagtg gagtattttg ttttatcttc
     2221 taaaatcact tcgtaaatct cttttattgt aacccaatcg gttttgaaat aatttatagt
     2281 ttccattata taagcctact ttcagagtta ataagaaatt ttatttgtat ataactatta
     2341 taacagtatt taacgtagta tcaatttgat ttataagatt tttttaagaa ttattaagag
     2401 ttaaaatgaa tatagataag aaaggagatg gaagaattga aagaattaac tccgattgaa
     2461 gatgataatt atagaattca gcaattgact gttcattttc aagatttaat taataaattt
     2521 gatgagctga aagatatgat tatctctgaa aataataatg gatatattca tattgtagct
     2581 atgcgaaatt ttgaaaggtt gttgaaagaa tttgaaagtt tatctgaaag ttctcttaaa
     2641 ggagtctatc aaataaaaat ggaatcagat agagatttaa gagattgtaa acaagcttat
     2701 tatgaagata attttgacgc taatatgtat ttaaaaaatg gaggtaaata agcatgccta
     2761 tgaaacattt aaaagaattt agacaatttg atttagatgg ctttttaaaa gataaaatta
     2821 ttactgtttc tgatattaag caaaacgtag aatattctga cggtaagcct acggataaca
     2881 ttaaaggtac aactattgtt tgtattatca aaagagataa tactaaatat aaggggaatg
     2941 aaaataaagc aaattatgaa gtgaaaacga atgaggataa caaatttaat gtgaagatac
     3001 ctagcacaga tattgtagaa atatataata gattacctaa aaataagcct gttaagttgt
     3061 taggtgtaaa gaatgcgaat gtttggggta attttcaaaa tgagttgtct gttgaatgtg
     3121 atgatgttgt tttaatagag cgaaaagaat gatggttaca acaaaaaccg tatctaaaag
     3181 aatcgattta agaaggaaat ggataggtat atttgttatc tttccatttt ctttaacatt
     3241 tgctttcttt gtgattcgtt atatattgat taaacgtttt gctattaatt taccattgct
     3301 aaattatatt ttgataatac tatgcgtata tcatgtcgta agtgttatta tttcgttctt
     3361 aactgtaatt tttgatggtg gttttgttaa acaccataat attttgttat cgattaaata
     3421 tcataattta aagaataaaa ttgatgtagc ttttttgaaa tctggtattt ataatcaatt
     3481 aaaaaatatt gctgataacg agaaaattgc agaaacacct aaggtcaaaa ttctaggtga
     3541 tactgaaatt catattgaaa atttagtagg gcaaactgat aaattagaga aattcaaacc
     3601 ggtattatct gctttattag atggtggatt agtttgtgaa acgttagatt tagatatgac
     3661 gcaaaaattt tttatagcaa ttttgattga tttaagtgat gaaaatcaaa aaattattca
     3721 aaatcatgaa gaatttttaa attatgtgaa agatgaaact tcgtatcaat taaaaattat
     3781 gcctaacttt ataaaagatg tctctaaatc tccgcatctt ttaatagcag gagagactgg
     3841 atcaggaaaa tcttactttt tatactttct tatatttcaa ttggttatta agaatgctga
     3901 tgtttatgta attgatagaa aaaaagtaat cactaaattt aaaagtatta taggcgctga
     3961 aaatgtagct agtgaaattg attctattat gcaactttta gaagaggttt ataaagaaac
     4021 taagcgtaga gaatcgattt tagagaaaga ttatccagaa aatatggata ttgattttac
     4081 aaatgttgga tttaatcctt tttatctagt tattgatgaa ttaggttcat tgattgctga
     4141 attagataat aaacagaaaa aagcttttaa tgataagcta cagaccattg cacaacgtgg
     4201 gcgtgcaaca ggagtgaata taattattgc tatgcaacat ccatcacatg ataatttacc
     4261 gacttcaatt cgtagtcaat tgacatttaa aactatttta ggtaatacag atgactctac
     4321 aagacattta ttgtttaaag cagatgatat ggctaatatt aaatttaaaa aaggacaagg
     4381 gtattttacg aattctggga ctcataataa agcgtctatt ttgtttgttc cgacttttaa
     4441 attcgaatta aatataaata atttgaaaga gcttattgta ttaaattcaa gtagaaatga
     4501 acaaaaaaat aatgagtcaa cgtaa
//
