LOCUS       NZ_CP038247             4697 bp    DNA     circular CON 29-OCT-2023
DEFINITION  Staphylococcus warneri strain GD01 plasmid p5GD01, complete
            sequence.
ACCESSION   NZ_CP038247
VERSION     NZ_CP038247.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10687116
            Assembly: GCF_007833855.1
KEYWORDS    RefSeq.
SOURCE      Staphylococcus warneri
  ORGANISM  Staphylococcus warneri
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus.
REFERENCE   1  (bases 1 to 4697)
  AUTHORS   Liu,C. and Fu,Q.
  TITLE     Whole genome sequence and comparative genome analysis of
            Staphylococcus warneri strain GD01 isolated from diseased porcine in
            China
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4697)
  AUTHORS   Liu,C. and Fu,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-MAR-2019) School of Life Science and Engineering,
            Foshan University, No. 33, Guang Yun Road, Shishan Town, Nanhai
            District, Foshan, Guangdong 528225, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method :: SOAPdenovo v. 2.4; Celera Assembler v. 8.0
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 555.0x
            Sequencing Technology             :: Illumina HiSeq; PacBio
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 10/29/2023 02:55:38
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,508
            CDSs (total)                      :: 2,422
            Genes (coding)                    :: 2,387
            CDSs (with protein)               :: 2,387
            Genes (RNA)                       :: 86
            rRNAs                             :: 7, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 7, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 63
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 16 of 35
            Pseudo Genes (incomplete)         :: 12 of 35
            Pseudo Genes (internal stop)      :: 11 of 35
            Pseudo Genes (multiple problems)  :: 4 of 35
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP038247.1.
            Bacteria and source DNA available from China.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4697
                     /organism="Staphylococcus warneri"
                     /mol_type="genomic DNA"
                     /strain="GD01"
                     /isolation_source="muscle abscess tissue"
                     /host="porcine"
                     /db_xref="taxon:1292"
                     /plasmid="p5GD01"
                     /geo_loc_name="China: Guangdong"
                     /collection_date="2017-12-01"
                     /collected_by="foshan university"
     gene            69..1238
                     /locus_tag="EOJ31_RS12405"
     CDS             69..1238
                     /locus_tag="EOJ31_RS12405"
                     /inference="COORDINATES: protein motif:HMM:NF013849.3"
                     /GO_component="GO:0005727 - extrachromosomal circular DNA
                     [Evidence IEA]"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA];
                     GO:0003916 - DNA topoisomerase activity [Evidence IEA]"
                     /GO_process="GO:0006260 - DNA replication [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rep family protein"
                     /protein_id="WP_223266651.1"
                     /translation="MSTKNKRCTNFMYVQQLKYLNLEIDELKERCINDVDVKDFAMIVH
                     DKDLNIDKTQFAEKHLHLFITFKQHKSLKYVSELICDYENRIDFFNRETVPDKNERNGF
                     MYLLHKTDGSAHKHQYAIDELIVDENSDIKEKIKKWDDNFKKRLNKKSVSGRKAVVKKY
                     LEQYSEILIDYNTLAEKLNTYELAQNATLIKNIDSLRIDKLHQQYIDDERYKNKKIVWI
                     YGVSGVGKSRLSKEIAFNFVEDNENIYVTQSNRDPFQNYTTENVIILEEFRATTGIDEN
                     ELFQILDKTNSSFSAGSRYKDKKLMPDLVIINSIYPPTEILKTETIDMNQLIRRLDSVL
                     HVDTKNIASQKFEDGQFYDFEVVKNHIYKPDLKTLETPLEQVLKGDFSV"
                     /name="Rep family protein"
     gene            1231..1503
                     /locus_tag="EOJ31_RS12410"
     CDS             1231..1503
                     /locus_tag="EOJ31_RS12410"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_189723676.1"
                     /translation="MFDLKAVKSEEFNYFLSILKKHDSDIEQTINELNTIHHYDLKNID
                     DFIEKFYDVKQFITFKCLNDAHKYYESEMNAVDETYRERFTEVSE"
                     /name="hypothetical protein"
     gene            1463..2554
                     /locus_tag="EOJ31_RS12415"
     CDS             1463..2554
                     /locus_tag="EOJ31_RS12415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012088991.1"
                     /GO_function="GO:0005524 - ATP binding [Evidence IEA];
                     GO:0003677 - DNA binding [Evidence IEA]; GO:0000166 -
                     nucleotide binding [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FtsK/SpoIIIE domain-containing protein"
                     /protein_id="WP_189723677.1"
                     /translation="MKLIESDSQKLANDLRHAFKSNNLTNDRITVDFDVCKVYVYELQN
                     GVISENARNIDERYLKDARVLVRRHLPSQYRLTPQTELKFESVDDRKRLVIDFESAKSK
                     KLDLKNMRKKAGYQIPLMTDVNWDISKEPHALITGVTGSGKSMMINYLFKSFKNLDAHI
                     YTIDPKLADLYAISKKHLPNSNYAVETDDVIALLQHLNDILDYRQNILSSHYDEIGIDA
                     YKAGMTPIVLFYDELAAFVMTLTDKKVKADYDSLIKNLILKGRSAGINVVLSMQKPLAT
                     TISTDIRDQLSFRLVLGKNTPKDTRRIVFGESDNQIVMTDNMPISDNWETEKISKYGGW
                     YVLPKMAEPFGIFETPDLNDLKI"
                     /name="FtsK/SpoIIIE domain-containing protein"
     gene            complement(2597..3190)
                     /locus_tag="EOJ31_RS12420"
     CDS             complement(2597..3190)
                     /locus_tag="EOJ31_RS12420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019236123.1"
                     /GO_component="GO:0009986 - cell surface [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPXTG cell wall anchor domain-containing protein"
                     /protein_id="WP_189723671.1"
                     /translation="MKTTKILGATTLAGALLFTGVGATHSNEAHAADKEKVTLETPQDW
                     QKKHDSLLKGRLEHPNQGGEGGGPGTVSSYQKSYQEYVDQNLKYGEQVENTEIIVPDEG
                     KAFLNGQQQTSDNNSNSQSQNNEQGQQQATDNNVATQNNQQQTQSQEPAQAEAKALPET
                     GEQSTNTGLVASIATLLLAVGSALTFKRFSKNNK"
                     /name="LPXTG cell wall anchor domain-containing protein"
     gene            4166..4537
                     /locus_tag="EOJ31_RS12425"
     CDS             4166..4537
                     /locus_tag="EOJ31_RS12425"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_189723673.1"
                     /translation="MKRKVIKMNTYGYMVFDVETALKDWEVGFGLEKGYNEKEGCFEFE
                     AIVLNDKRTYEPRTKKDGTTFIPSSNDLEKFIVRVDEQPKDFKKFEKISLVDVYDSFLI
                     GVKTYSPTPVIACEKIIKA"
                     /name="hypothetical protein"
ORIGIN
        1 aaaataaaaa aataatatac aaagactttg tacaaagcct atcaaatcaa agaggtagat
       61 gtagaaaatt gagcactaaa aacaagcgat gtacaaattt tatgtacgtt caacaactta
      121 agtatttgaa tttagaaata gatgagttga aagaaagatg tattaatgat gttgatgtaa
      181 aagattttgc gatgattgtt catgataaag atttgaatat agataaaacg caatttgctg
      241 aaaaacattt acacttgttc attacgttta aacagcataa atcattgaaa tatgtttctg
      301 aattgatttg tgattatgag aatcgcatag actttttcaa tcgtgaaact gtacccgata
      361 aaaatgagcg aaatggtttt atgtatttgt tgcacaaaac tgatggatca gctcataaac
      421 atcaatacgc aatcgatgaa ttaattgtcg atgaaaatag tgatattaaa gaaaaaatca
      481 aaaaatggga cgacaatttt aagaagagat taaacaaaaa gagtgtaagt ggtcgtaagg
      541 cagttgttaa gaaatattta gaacaatata gcgaaatttt aattgattat aacactttag
      601 cagaaaaact gaacacttat gaattagctc aaaatgctac gttgattaaa aacattgata
      661 gtttaagaat tgataagcta catcaacaat atatcgatga tgagcgctat aaaaacaaaa
      721 aaatagtttg gatatatggc gtttcaggtg ttggtaagtc aaggttatca aaagaaattg
      781 catttaattt tgttgaagac aatgaaaata tatacgtaac acaatctaat cgtgatcctt
      841 ttcaaaatta cacaactgaa aatgtgatta tattagaaga atttcgcgca acgacgggca
      901 ttgatgaaaa tgagttgttt cagattttag ataaaaccaa ttcttcattt tcagctggca
      961 gtcgatacaa agataaaaaa ttgatgccag atttagttat tatcaattca atttatccac
     1021 caactgaaat tttaaaaacc gaaacaattg atatgaatca gttgatacga cgattagatt
     1081 cagttttgca cgttgatact aaaaatatag catcacaaaa atttgaagat ggtcagtttt
     1141 atgattttga agtagttaag aatcatatat acaaaccgga tttaaaaact ttagaaacgc
     1201 cattagaaca ggtgttaaag ggggatttta gtgtttgatt tgaaagcagt aaaaagcgaa
     1261 gaatttaact attttctaag cattttgaag aaacatgata gtgatattga gcaaacaata
     1321 aatgagttga acacaataca tcattatgat ttgaaaaata tagatgattt cattgaaaaa
     1381 ttttatgatg ttaagcaatt tatcacgttc aaatgcttaa atgacgcaca taaatattat
     1441 gaaagtgaga tgaatgcagt tgatgaaact tatagagagc gattcacaga agttagcgaa
     1501 tgacttaaga catgcattta aatcgaataa tctcacgaat gacaggatta cagtagattt
     1561 tgacgtatgt aaagtctatg tatatgagct acagaacggt gtaattagtg agaacgcacg
     1621 taacattgat gaacgttatt taaaagacgc tagagtactt gtacgtcgtc acttaccatc
     1681 tcaatatcgt ttaacgcctc aaactgagtt aaaatttgaa agtgttgatg atagaaaaag
     1741 attagtgatt gattttgaat cagcaaaatc taagaaatta gatttaaaaa atatgcgtaa
     1801 aaaagcaggt tatcaaatac ctttgatgac ggatgttaat tgggatatat cgaaagaacc
     1861 acacgcgtta attaccggcg tgacgggctc gggcaaatcg atgatgatta attacttatt
     1921 taaatcattt aaaaatttag atgcacatat ctacacgatt gaccctaaat tagcagattt
     1981 atacgcaatt agtaaaaaac atttacctaa ttcaaattat gcagttgaaa cagatgatgt
     2041 tatcgcatta ttacagcatt taaacgatat attagactat cgtcaaaata tcttatcatc
     2101 acactacgat gaaataggta tagacgcata taaagctggt atgacgccta ttgtactttt
     2161 ttatgacgag ttagcagcat ttgtgatgac gttgacagat aaaaaagtaa aagctgatta
     2221 cgacagtttg attaaaaact taattctgaa aggtcgtagt gcgggtatta acgttgtttt
     2281 atcaatgcaa aaacctttag ctacaacgat ttctacagat atacgcgatc aattgagttt
     2341 tagattggta ttaggtaaaa acacacctaa agatacacga cgtatcgtgt ttggcgaaag
     2401 tgataatcag atagtaatga ctgataacat gccgatttcc gataattggg aaaccgaaaa
     2461 aattagcaaa tatggtggtt ggtatgtact gccaaagatg gctgaaccat ttggcatttt
     2521 tgaaacacca gatttaaacg atttgaagat ataaaaaaag agcacaaagc taaactttgt
     2581 actctagagc tcattattat ttgttgtttt tagaaaaacg tttgaaagtt aatgctgaac
     2641 caactgctaa taataatgta gcgattgatg ctactaaacc agtatttgtt gattgttcac
     2701 cagtttctgg taatgcttta gcttcagctt gagctggttc ttgtgattga gtttgttgtt
     2761 gattgttttg agtagctaca ttgttgtcag tcgcttgttg ttgaccttgt tcattatttt
     2821 gagattgaga gtttgaattg ttatcagaag tttgttgttg accatttaaa aatgctttac
     2881 cttcatcagg tacgatgatt tctgtatttt caacttgctc accatatttt aagttttggt
     2941 caacatattc ttgataactt ttttgataac tactaacagt accaggaccg ccaccttctc
     3001 caccttggtt agggtgttct aaacgtcctt taagtaacga atcatgcttt ttttgccaat
     3061 cttgaggtgt ttcaagagtt actttctctt tgtcagcagc atgagcttcg tttgaatgag
     3121 tagcgcctac acctgtaaac aataacgctc cagctaaagt tgtagcacct aaaattttag
     3181 ttgttttcat aatttgttgc cccctaattt tttgtgtatt gcgctttcat tttaacatag
     3241 ggtatttatt aaaaaaataa taatttaaaa ttttagttaa gtagagaaaa tcagtttaac
     3301 tttatagtaa agttagttaa ctatagtatg aagtacaaaa aagttattga attttatgta
     3361 taattaattg atatttagaa ctaataagtt taagatgact ttatacaatt ttttgcataa
     3421 cgtgaataaa cgaacatttg ttcttgctaa aaattggcat aaaaaaagag tgtttttata
     3481 aataattttt gtccgtcgcc aaacttcaaa aaattatttc aaaacaccca acacgttttt
     3541 gaacctatac aattaaatac tcagctaaaa aatagaaact attttttact aagccaagct
     3601 ttaattaaag ctgaataagt cagcccttgt ttgataaacg taatatatca tgtttgtcga
     3661 tatttatcaa ataaattaaa taggggtctg atgagtatac gcgtgacaaa gcgtatagga
     3721 atagacattg atgtagttaa ctcaagctac gagcattgtc agtaaaagtt gagtcgtcag
     3781 tatgtagaaa aggcagatct acatactatc gtcaattggt gcctacgacc aagccaaaaa
     3841 cggtaggggc gggtgtctgg tcgcaaaatg cgagggacac acattatctt gattaattag
     3901 ctaacgtcaa agacgttgaa gtcacagacg tctataaaga aggactataa cagtaagtta
     3961 gctatagcag tgtttatcga ctttgactgc tagataacaa ctcaaccagc gtaaaacaaa
     4021 ggtcacgctt tgttaatgat taatcaagtt gtttggacag acaaaacgta aaatgtgtgt
     4081 ggaataacca cgattgttat ttcaattttc tttaaaaata aggggaggga actgcccacc
     4141 gcaggggcag tgacggggct aatacatgaa aaggaaagtg ataaaaatga acacatacgg
     4201 atacatggta tttgatgtag aaacagcatt gaaagattgg gaagtaggat ttggattaga
     4261 aaaaggttac aacgaaaaag aaggatgttt tgagtttgaa gcaatcgttt tgaatgataa
     4321 acgtacttat gaaccacgca caaaaaaaga cggtacgaca tttataccgt catcgaatga
     4381 tttggaaaaa tttattgtga gagtggatga acagccgaaa gattttaaaa agtttgagaa
     4441 aatctcactg gttgatgttt acgatagttt tctaattggt gtgaaaacat atagtccaac
     4501 tcctgtcatt gcttgcgaaa aaattattaa agcttaattg ctcactgata ttgtctacca
     4561 ccgagtctcg acgcgcttgc gtggtcgtag cgatggtggt gggcgcgcga atgcgcgcaa
     4621 atgattcgga attaaaaatt ttatacatgg ctttcaagcc tgtcattttg cgacttttgg
     4681 gcttgttata aagtcgc
//
