LOCUS       NZ_CP038246             5392 bp    DNA     circular CON 29-OCT-2023
DEFINITION  Staphylococcus warneri strain GD01 plasmid p4GD01, complete
            sequence.
ACCESSION   NZ_CP038246
VERSION     NZ_CP038246.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10687116
            Assembly: GCF_007833855.1
KEYWORDS    RefSeq.
SOURCE      Staphylococcus warneri
  ORGANISM  Staphylococcus warneri
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus.
REFERENCE   1  (bases 1 to 5392)
  AUTHORS   Liu,C. and Fu,Q.
  TITLE     Whole genome sequence and comparative genome analysis of
            Staphylococcus warneri strain GD01 isolated from diseased porcine in
            China
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5392)
  AUTHORS   Liu,C. and Fu,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-MAR-2019) School of Life Science and Engineering,
            Foshan University, No. 33, Guang Yun Road, Shishan Town, Nanhai
            District, Foshan, Guangdong 528225, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method :: SOAPdenovo v. 2.4; Celera Assembler v. 8.0
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 555.0x
            Sequencing Technology             :: Illumina HiSeq; PacBio
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 10/29/2023 02:55:38
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,508
            CDSs (total)                      :: 2,422
            Genes (coding)                    :: 2,387
            CDSs (with protein)               :: 2,387
            Genes (RNA)                       :: 86
            rRNAs                             :: 7, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 7, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 63
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 16 of 35
            Pseudo Genes (incomplete)         :: 12 of 35
            Pseudo Genes (internal stop)      :: 11 of 35
            Pseudo Genes (multiple problems)  :: 4 of 35
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP038246.1.
            Bacteria and source DNA available from China.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..5392
                     /organism="Staphylococcus warneri"
                     /mol_type="genomic DNA"
                     /strain="GD01"
                     /isolation_source="muscle abscess tissue"
                     /host="porcine"
                     /db_xref="taxon:1292"
                     /plasmid="p4GD01"
                     /geo_loc_name="China: Guangdong"
                     /collection_date="2017-12-01"
                     /collected_by="foshan university"
     gene            complement(515..1849)
                     /locus_tag="EOJ31_RS12375"
     CDS             complement(515..1849)
                     /locus_tag="EOJ31_RS12375"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /GO_function="GO:0005524 - ATP binding [Evidence IEA];
                     GO:0003677 - DNA binding [Evidence IEA]; GO:0000166 -
                     nucleotide binding [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="FtsK/SpoIIIE domain-containing protein"
                     /protein_id="WP_189723665.1"
                     /translation="MFKMVLLLVIIIALLQAVKYILSKYLLKNTFPNLIVGTSETLNHL
                     TIWVLLICLGLLVTSLLINLFDGGILTNKNVIQSYKNYRFKNRIDIAFIYAEMYKTVKT
                     LEEQEITIAKTPKVKIIDNETIYIENMTGLSEKLDTFKSHLTSTLKGSYIVDTFQLQKE
                     ANYYEVKLLNMNEETRYLFEKNEDYLEVIQSTESYELPMTKNILVNLAKTPHMLVAGAT
                     GQGKSYLLYHILFNFILKDCDIYLIDRKKVLTKFRNIVGLENVGDDHPEDEDSNIFKVI
                     NKVEKIMDERERYLNENYEEDLDIDFRKEGWKPVLLCIDELGSLASELSSKNEKQFYKT
                     LQSIIQRGRATGVNVIISLQQPNAKNLPTAIRDNLMFKTILGDTDETTRSLVFSSSDLS
                     DIKFKPGEGYFTLAGKFNKPSVLFVPTFKIPLTIENLKKLQDERN"
                     /name="FtsK/SpoIIIE domain-containing protein"
     gene            complement(1900..2346)
                     /locus_tag="EOJ31_RS12380"
     CDS             complement(1900..2346)
                     /locus_tag="EOJ31_RS12380"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_189723667.1"
                     /translation="MRLLDTFMKFDAEGFFKDKKLAYLRCYDAYEKKLNKETGYKEKTD
                     KKLGVWVELSIISDNTKYEILDSETGEKRIEESQNFNEKFMALVTNPSKSVEDFKSFSI
                     GDPVKITGYQGEVIMGRFNDIYQPRVKDVVKIGDEQQTQQKRSE"
                     /name="hypothetical protein"
     gene            complement(2543..2998)
                     /locus_tag="EOJ31_RS12385"
     CDS             complement(2543..2998)
                     /locus_tag="EOJ31_RS12385"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_189723669.1"
                     /translation="MHLIDPDLYLELDIEELREGRHIYSVMSRQLRNVENISKIFNEHL
                     KDLEDFKEMIKDTDFRESENIDRMIKFMQFQQKFQEEFVLNISNNLEPILESYALFVNM
                     NNEKNNVGSLKNLTRRSESFRRIQNTFEDTTEKLEEITKEREEKEVN"
                     /name="hypothetical protein"
     gene            complement(3011..3469)
                     /locus_tag="EOJ31_RS12390"
     CDS             complement(3011..3469)
                     /locus_tag="EOJ31_RS12390"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_189723659.1"
                     /translation="MSDVKQKKKDFTIDEKKTLIASITGYERNIVEGFFLTSQLLDSLT
                     TITHNFRSLNLNQDEIMNISYAYDEITSNISEITQTFIETLDLIFNSKSLIESTERLEE
                     KFMNEDELNHVINQLELFNKMNEIHKVKIRENYLKVIDSQYEYDEEED"
                     /name="hypothetical protein"
     gene            3654..4280
                     /locus_tag="EOJ31_RS12395"
     CDS             3654..4280
                     /locus_tag="EOJ31_RS12395"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_189723661.1"
                     /translation="MNQKEINELEEYELQNYKYLKDIDGYNYEITNIVNAANKSKSTIL
                     RKLQSQKIIDELGKDLKETKNNRGNKKFLFTLNGVRKLVSIIHNVSFEQIKNMSISDMQ
                     KLTQFNENEPIQSFKNENIKKSGKNWIELQKSFENNIEPIIIEQRETIANLKNEIRFMN
                     EDFKHNQFIIESQNQRITDLEEINDLLREKIDMVYAYHQKKDTNK"
                     /name="hypothetical protein"
     gene            complement(4288..5391)
                     /locus_tag="EOJ31_RS12400"
     CDS             complement(4288..5391)
                     /locus_tag="EOJ31_RS12400"
                     /inference="COORDINATES: protein motif:HMM:NF014537.3"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA];
                     GO:0003916 - DNA topoisomerase activity [Evidence IEA]"
                     /GO_process="GO:0006270 - DNA replication initiation
                     [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation factor domain-containing
                     protein"
                     /protein_id="WP_189723663.1"
                     /translation="MIDFNVDQFTLTIMINEDEYIGYDDMYFEYIQERFSETLKLVELF
                     GEPVHLNYGDGWYNNILDFGYADRHLFFKYNDENIENHISVVFHAEMLKEYLKSYRNKI
                     DKTYNIFKMIKKLHTLGSIRFSRLDIAIDLINEEVVVDDLANQINNYDVVIKNSRNALI
                     SVDSIQQIGSGGKTETMYVNKRKSASFLRIYDKKIEAMLKESADLTTAIECDSWTRIEL
                     ELKKYYAHNISELILNCETEEEFNKILIGTFIEKFTFLEVDNNENSDDEYIELPFYQKL
                     QQFMNGEKIVLKGHERKRVTELEQKYNYMLNNGSMRLFAMIKKAYGEEGLREVFELINK
                     DCEKIELNRDHFRLIDKFKKETPFFKE"
                     /name="replication initiation factor domain-containing
                     protein"
ORIGIN
        1 agaaagccct ccaatctcgg ttgaaccgtt gatatgaaag gattcagaga ggtttaagat
       61 ggttgtttag gggggggtct gagagtgcgt cgcggtacgt attactagac gtaccgctcg
      121 actctttgaa tcttcgtgcc taaaaaaatc taaagatttt ttcttaacgg cactcgattc
      181 tgcaggtcga gtgattgtct tttcatacaa accacgatat aataatgaca cagaactaaa
      241 caaaatctaa aacccaacta aatcacttcg caacgtaaac catcgccaaa cgttttacgt
      301 tgcttttttt attgtagcat atttcttcta acgcttataa atcaagttaa acatttattc
      361 caattgcttt atttccaatc agattctgaa cccttaataa acccaaaact gtcgactcgt
      421 cgggctaata gctcacgcta tgccgacatt cgtcgctaca gtttaattaa gggttcttct
      481 aattagaaat aaattttctc ggcataaacg ttgcctaatt acgctcatct tgcaattttt
      541 ttaaattctc aatcgttaaa ggaattttga aagttggaac aaataataca gatggtttat
      601 taaattttcc tgctaaagta aaataccctt cgcctggttt aaatttgata tcagataaat
      661 cactacttga aaataccaaa cttcgtgttg tttcatctgt atcacctaat attgttttaa
      721 acattaagtt atctctaatc gcagtaggta aattcttcgc attaggttgt tgtaaactaa
      781 taattacatt aacacccgtt gctctacctc gttgaataat actctgtaac gtcttgtaga
      841 attgtttttc gttcttagat gacaattcac tagcaagtga accaagttcg tcaatgcata
      901 acaatacagg tttccaaccc tcttttctga aatcaatatc taaatcttct tcataatttt
      961 catttaaata tctttctcgt tcatccatga ttttttcaac tttatttatc actttgaaaa
     1021 tatttgaatc ttcatcttct ggatgatcat cgcccacatt ttctaaacct acaatatttc
     1081 taaatttcgt taaaactttc tttctatcaa tcaagtaaat atcacaatct tttagaataa
     1141 aattaaataa tatgtgataa agcaagtacg atttaccctg accagttgca ccagcaacta
     1201 gcatatgtgg tgttttagct aaattaacta aaatattttt cgtcataggc aattcataag
     1261 attcggttga ctgaataact tctaaataat cttcattttt ttcaaataaa taacgtgttt
     1321 cttcgttcat gtttaataac ttcacttcat aataatttgc ttctttctgt aattgaaacg
     1381 tatctacaat gtaactacct ttgagtgttg acgttaaatg tgacttgaat gtatctaact
     1441 tttcacttaa acctgtcata ttttctatat agatggtttc attgtcgata attttaactt
     1501 tcggtgtctt tgcaattgtt atttcttgtt cttctaatgt tttaactgtc ttgtacattt
     1561 ctgcatatat aaatgctata tcgattctat tcttaaatct gtaattctta tatgattgaa
     1621 ttacattctt attcgttaaa ataccaccat caaacaagtt gattaacaaa ctggtaacca
     1681 aaagacccaa acaaattaaa agtacccaga ttgttaaatg attcaatgtc tcactagtac
     1741 caacaatcaa gtttggaaac gtatttttca ataaatattt gcttaaaata tatttaactg
     1801 cttgtaataa agctattatt attacaagca gtaataccat tttaaacatg aaaatacgtt
     1861 ttcttattct caaacttcgt attttcagtt taaacatact tattcacttc gcttttgttg
     1921 agtttgttgt tcatcgccaa tttttacaac atctttaact ctcggttgat agatatcatt
     1981 aaatctaccc ataattactt cgccttggta accagtgatt tttacggggt caccaatact
     2041 aaatgattta aaatcttcga cagatttgct agggtttgta actaaagcca taaatttttc
     2101 gttgaagttc tgagattctt caattctctt ttctcctgtt tctgagtcta aaatttcata
     2161 ttttgtatta tctgaaatga tacttaattc aacccaaaca cccaattttt tgtctgtttt
     2221 ttctttatat ccagtttctt tatttaattt cttttcatac gcatcataac aacgtaaata
     2281 agctaatttc ttatctttaa aaaaaccttc tgcatcaaat ttcataaatg tatctaataa
     2341 tctcatagta aatctctcct taaatatttt taaattttgt agttaaataa ataactatta
     2401 ctttaattaa tttgccaaag ttaacaatta acattttcaa taagtcgtaa agtattttaa
     2461 ttatgcattt acaagaataa attaataagt tcatcgttag tttcaaagtc tttaataaaa
     2521 tattgtcatt tgattgttgc atttaattca cttctttttc ttcacgttct ttcgtaatct
     2581 cttctaactt ctctgttgta tcttcaaatg tattttgaat tcgtctaaac gattctgaac
     2641 gtctagttaa atttttaagt gatccaacat tatttttttc gttattcata ttcacaaaca
     2701 aagcataaga ttctaatata ggttctaaat tattagatat atttaaaaca aattcttctt
     2761 gaaatttttg ttggaattgc atgaatttaa tcattctatc tatattttcg ctttctctga
     2821 aatctgtatc tttaatcatt tctttaaaat cttctaaatc tttcagatgt tcattaaata
     2881 tcttgctaat attttcaaca tttcttaatt gtcgagacat aacactatat atatgtcgac
     2941 cttctcttaa ttcttcaata tctaactcta aatataaatc tgggtctatt aaatgcatac
     3001 taaacacctc ctaatcttct tcttcgtcgt attcatattg tgaatcaata acttttaaat
     3061 aattttcacg tattttcact ttgtgaattt cattcatttt attaaataat tcaagttgat
     3121 taataacatg atttaattca tcttcattca taaatttttc ttcaagtctt tctgtagatt
     3181 caatcaacga ttttgaatta aatattaaat ctaatgtttc tatgaacgtt tgtgtaattt
     3241 cactaatatt acttgtaatt tcatcatacg cataagaaat attcataatt tcatcttgat
     3301 ttaaatttaa acttctaaaa ttatgtgtga ttgttgttaa agaatctaac aattgactcg
     3361 ttaaaaaaaa gccttcaaca atatttcttt cataaccagt gatagaagca attaaagttt
     3421 ttttctcatc tatcgtaaaa tctttcttct tttgtttaac atcactcatg taatcacctc
     3481 tttctttaac tttctataat taagtttatt cggttcacaa cgaatcatca ataagttgac
     3541 aaaataaagt taattattta aaatctattt aaagactatt acaacagtgg ttataaatat
     3601 tttttaaaaa atattttacg aatcacaaca aatcacaaaa gggtgtgcct gttatgaatc
     3661 aaaaagaaat taacgaatta gaagaatatg aattacaaaa ttataaatat ctaaaagata
     3721 tcgacggtta caactacgaa ataactaata ttgttaatgc agctaataaa tctaaatcaa
     3781 ctattttaag aaaactacag agtcaaaaaa ttattgatga actaggtaaa gacttaaaag
     3841 aaacaaaaaa taatcgaggt aataaaaaat ttttatttac gctcaatggt gtaagaaagt
     3901 tagtatcaat tattcataat gttagttttg aacaaataaa aaacatgtct atttcagaca
     3961 tgcaaaaatt aactcaattt aatgaaaatg aaccaataca gtcgtttaaa aatgaaaata
     4021 tcaaaaaatc aggtaaaaat tggatagaac ttcaaaaatc atttgaaaat aacatcgaac
     4081 ctatcattat tgaacaaaga gaaacaatcg caaatttaaa aaatgaaata agatttatga
     4141 atgaagattt taaacacaac caatttatca ttgaatcgca aaatcaaaga attacagacc
     4201 ttgaagagat taacgattta ttaagagaaa aaatcgacat ggtatatgca tatcatcaaa
     4261 aaaaagacac taacaaatag ttagtgtcta ttctttaaag aatggcgttt cttttttgaa
     4321 tttatcgatc aaacgaaaat ggtctctatt caactctatt ttctcacaat ctttattaat
     4381 taattcaaaa acttcacgta atccttcttc cccgtaagct ttctttatca ttgcaaataa
     4441 tcgcatactt ccattattca acatataatt atatttttgt tctaactctg taactctttt
     4501 tctttcgtgt ccttttaata caattttttc gccattcata aattgttgta atttttgata
     4561 aaaaggtaat tcgatgtatt catcatctga attttcatta ttatcaactt ctaaaaaagt
     4621 gaacttctca ataaatgttc cgattaaaat tttattaaat tcttcttctg tctcacaatt
     4681 taatattaat tctgaaatat tatgagcgta gtatttcttt aattctaatt caattctcgt
     4741 ccatgaatcg cattctattg cagttgttaa atctgcagat tctttcaaca ttgcctcaat
     4801 cttcttatca tagattctta aaaatgatgc agatttacgc ttattaacat acattgtttc
     4861 agttttacca ccactaccaa tttgttgaat tgaatctaca gaaattaaag catttcttga
     4921 attttttata acaacatcat aattgttaat ttgattcgct aaatcatcca ctacaacttc
     4981 ttcatttatc aagtcgatag ctatatctaa tcttgaaaat ctaatcgagc ctaaagtgtg
     5041 taatttcttt atcattttaa aaatgttata agtcttatct atcttatttc tataactttt
     5101 caaatattct tttaacattt ctgcatgaaa aacaactgaa atatggttct caatattttc
     5161 atcgttatac ttaaaaaata gatgtctatc agcataacca aaatctaaaa tgttgttata
     5221 ccaaccatcg ccataattca aatgaactgg ttcgccaaac aattctacta gttttaaagt
     5281 ttctgaaaag cgttcttgaa tatattcgaa atacatatca tcgtaaccaa tatattcatc
     5341 ttcatttatc ataatcgtta aagtaaattg gtctacatta aaatcaatca at
//
