LOCUS       NZ_CP037967             5733 bp    DNA     circular CON 05-JAN-2024
DEFINITION  Klebsiella pneumoniae strain SCKP020135 plasmid p2_020135, complete
            sequence.
ACCESSION   NZ_CP037967
VERSION     NZ_CP037967.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN07609088
            Assembly: GCF_002853475.2
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 5733)
  AUTHORS   Liu,L., Long,H., Feng,Y. and Zong,Z.
  TITLE     The complete genome of Klebsiella pneumoniae strain SCKP020135
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5733)
  AUTHORS   Liu,L., Long,H., Feng,Y. and Zong,Z.
  TITLE     Direct Submission
  JOURNAL   Submitted (14-MAR-2019) Center of Infectious Diseases, West China
            Hospital, Sichuan University, Guoxuexiang 37, Chengdu 610041, China
REFERENCE   3  (bases 1 to 5733)
  AUTHORS   Liu,L., Lu,Y., Lin,J., Yang,B., Feng,Y. and Zong,Z.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-SEP-2017) Center of Infectious Diseases, West China
            Hospital, Sichuan University, Guoxuexiang 37, Chengdu, Sichuan
            610041, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.4.7
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 200.0x
            Sequencing Technology :: Illumina HiSeq; Oxford Nanopore MiniION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 01/04/2024 23:04:13
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,513
            CDSs (total)                      :: 5,392
            Genes (coding)                    :: 5,251
            CDSs (with protein)               :: 5,251
            Genes (RNA)                       :: 121
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 87
            ncRNAs                            :: 9
            Pseudo Genes (total)              :: 141
            CDSs (without protein)            :: 141
            Pseudo Genes (ambiguous residues) :: 0 of 141
            Pseudo Genes (frameshifted)       :: 61 of 141
            Pseudo Genes (incomplete)         :: 76 of 141
            Pseudo Genes (internal stop)      :: 25 of 141
            Pseudo Genes (multiple problems)  :: 17 of 141
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP037967.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..5733
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="SCKP020135"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="p2_020135"
                     /geo_loc_name="China: Sichuan"
                     /collection_date="2017"
     gene            complement(228..902)
                     /locus_tag="CLQ43_RS28135"
                     /old_locus_tag="CLQ43_28150"
     CDS             complement(228..902)
                     /locus_tag="CLQ43_RS28135"
                     /old_locus_tag="CLQ43_28150"
                     /inference="COORDINATES: protein motif:HMM:NF014045.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NYN domain-containing protein"
                     /protein_id="WP_001259273.1"
                     /translation="MRTIVYVDGFNFYHGLVKRSGYKWLDLYKLFEEQLLPIRARESQL
                     IQVKFFTAEIKAKFATRGELAHQAQQAYHRALLQIYGEKLQIIKGYYSERQECAMTFNE
                     GYPPSKTDRTTVWKLEEKQTDVRMALEMYRDAIRGEAEQLVLCTNDSDMIPPIEMIKAD
                     RPELKIGIVVPREQDTSRVISSLASLGDWSLPYVSYEALRLALLPDKVPTRRKPILKPN
                     HW"
                     /name="NYN domain-containing protein"
     gene            1250..1666
                     /locus_tag="CLQ43_RS28140"
                     /old_locus_tag="CLQ43_28155"
     CDS             1250..1666
                     /locus_tag="CLQ43_RS28140"
                     /old_locus_tag="CLQ43_28155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001283459.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="WP_060628320.1"
                     /translation="MSDQKNNFNLQKQTLESKWGKEALSMGWSAIPTSLFFLQGALNMT
                     PTTFNVLLHLIIHWWKPYDWPHPSQESIAVRMGVSSRTVQRSLQELENYGLLTKIRTSK
                     DNPKYKGRNIYDMSLLVKSLNILTPDLNAKLNEK"
                     /name="helix-turn-helix domain-containing protein"
     gene            2447..2755
                     /locus_tag="CLQ43_RS28145"
                     /old_locus_tag="CLQ43_28160"
     CDS             2447..2755
                     /locus_tag="CLQ43_RS28145"
                     /old_locus_tag="CLQ43_28160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012564913.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_060628143.1"
                     /translation="MTEKLKGTASVLHETKTYEELVEKHSVEVANGLLANAINTALPNA
                     GITSNDVAGFSKVTIALRTGEVDLAKTAKEANADAAAVSANIIAGLKASQKSKDEIK"
                     /name="hypothetical protein"
     gene            complement(2948..3640)
                     /locus_tag="CLQ43_RS28150"
                     /old_locus_tag="CLQ43_28165"
     CDS             complement(2948..3640)
                     /locus_tag="CLQ43_RS28150"
                     /old_locus_tag="CLQ43_28165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000550475.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3800 domain-containing protein"
                     /protein_id="WP_071556240.1"
                     /translation="MHLLYVDESGTPSDPTLNHFVLSGISVFEKQTHWIEQEMNAIAAR
                     FNTDDPYERELHGSPMRGGRDGWKNFPFDDRKQAIKDCLTLLTQKHRDIRIFACVVPKG
                     SLGGKDVITESFYQISSRFDMYLSRLHYQGATSRGVAIFDKSSTEKSIQSLARTFKDTG
                     YGYGKLRNFSEVPLFLDSKASRLIQLADLVSYSIFRKFELNDDEFYKIIEHSFDYNNGK
                     VHGLYVAH"
                     /name="DUF3800 domain-containing protein"
     gene            complement(4602..5003)
                     /locus_tag="CLQ43_RS28155"
                     /old_locus_tag="CLQ43_28170"
     CDS             complement(4602..5003)
                     /locus_tag="CLQ43_RS28155"
                     /old_locus_tag="CLQ43_28170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009310048.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="WP_060628044.1"
                     /translation="MARVSISEAARLTGKSRTTLHRLIKAGDLSTCSGERNAKMVDTSE
                     LLRVFGPFEQPKGEHHSGQVAEQRDTASADQSEQVIRHLKQEIEHLNTLLLSKDSHIDS
                     LKQAMLLLENHQAKLTESPAPWWKFWKKS"
                     /name="helix-turn-helix domain-containing protein"
     gene            complement(5003..5194)
                     /locus_tag="CLQ43_RS28160"
                     /old_locus_tag="CLQ43_28175"
     CDS             complement(5003..5194)
                     /locus_tag="CLQ43_RS28160"
                     /old_locus_tag="CLQ43_28175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000166328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_060628048.1"
                     /translation="MMKQQKTALNMAKFIQNQSLLLLEKLNELDLDVEADLCEKLHDDA
                     EHLFRTLSSRLDALQDGN"
                     /name="Rop family plasmid primer RNA-binding protein"
     Typing          5316..5719
                     /name="ColRNAI_rep_cluster_1987"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="93.103"
                     /coverage="99.0"
                     /evalue="4.61e-167"
ORIGIN
        1 cggagtagta gagtgttcta cagagttctt gaagtggagg cctgactgcg gctacactgg
       61 aaggacagtt ttggtacctg cgctccgtga aagccagtta ccttcggaag aaagagttgg
      121 tagctcttga ttccggcaaa cgaaccaccg ttggtagcgg tggttttttt gtttgcaggg
      181 catgagatta cgacgagagt aaaaggatca caagaagatc cggctgttta ccagtgattt
      241 ggcttcagta ttggtttccg tctagtggga accttatctg gtaatagcgc taatctcaaa
      301 gcttcgtagg atacatatgg caggctccaa tcccctaaac tagccagact actaataact
      361 cgactagtat cttgctccct tggtactacg attccaattt tcaattcagg tcgatcggct
      421 tttatcattt ctattggcgg tatcatatcc gaatcgttag tacagagaac caactgctct
      481 gcctcaccac gaatcgcatc gcgatacatt tctaaagcca ttctaacgtc agtctgcttt
      541 tcttctaact tccagaccgt tgttctatcc gttttcgatg gaggataccc ctcattgaag
      601 gtcatcgcac attcctgacg ttctgagtag taccctttga ttatttgtag cttctcgcca
      661 taaatctgca gtaatgctcg atggtaagct tgctgagcct ggtgagctaa ctcacctcgg
      721 gtagcaaatt tagctttgat ctcagcagtg aagaacttca cctgaatcaa ctgtgactct
      781 cttgctctta tcggaagtag ttgttcttca aagagcttat aaaggtccag ccacttatat
      841 cccgaacgtt tgaccaatcc atggtaaaaa ttgaacccat ctacgtaaac tattgttctc
      901 attttatttc acgcataaaa aaaccgcctc taagggcggt tttaacaaca aaaactaacg
      961 ttagcaaaca gtttaagttg tagttcctca gggttaaaac taaccgagag agcggtttca
     1021 agctcctgaa ggaagacgcg taacttaatc gctgcccacc taaagggagg tttagagcct
     1081 caagggagcc gcgtaactta atcgcgctac caagaggtga gtgtagatta agtatagttg
     1141 aatataatga tattataagc gcgctggtgt cgtactaatt atatgaatta atttaccaac
     1201 ctgctaagct gaagtcttct aagaagactt cagcttagca ggttggtata tgtcagatca
     1261 aaaaaataat tttaaccttc aaaaacaaac acttgaatct aaatggggaa aggaagcatt
     1321 aagcatgggc tggtcagcta ttcctacatc acttttcttc ttacagggtg cgctcaatat
     1381 gacacccaca acattcaatg tcttactcca tctaattatc cactggtgga aaccctacga
     1441 ttggccacat ccctctcagg agagcattgc agttagaatg ggtgtttcat caagaacagt
     1501 gcaacgctca ctccaagaac ttgaaaacta cggattgctt acaaaaattc gtacaagtaa
     1561 ggacaaccct aagtacaaag gaagaaacat ttacgatatg tctcttttgg ttaagtcact
     1621 aaatattctt actcctgacc ttaacgccaa actgaacgaa aaataaccgc aaaatacatt
     1681 taaaatcagg ccaccgtcgt agcaggttta ccatttatca ggtctgtatc tcggactccg
     1741 ccaagatgaa caggggattg ccggcacact ctgcactcac cttagatcaa aatttaatca
     1801 ccacgaaaga tgatctaaga tagtgcttta caagcaaaac atcttaataa tatattcatt
     1861 aaataaaatg aatatttaat ggaaagcctt aaatgcctgg aaaaaagtgc cccttctgta
     1921 acaagctgac cctcttcgga aacagctgta cttcttgcaa tgctgtagtg agaacaccac
     1981 caaacgaagg ccggggcgga agaggtaagc aatgtccatt ttgtaagaca atgacactgt
     2041 tcaaagatgg tacgaatgga tctctaaaat gctccatgtg tcagcgtaag ttttccccat
     2101 cgtaaggggg aaaatgtcac acccagtagg aaagcacgta tcgaaaaagc aagaacacga
     2161 acttaattac tggctaaaaa agagggggtt caaagagagt aaacatcact agtgtggctg
     2221 attgggtgag caaagctagg actaggaatg cctagcaatg agtatctcga tgcatgccga
     2281 attagataaa tactttcaag ataacaaagg gttatgggtt gacgaatttg agacaaaatg
     2341 atctctgtta catctgagat aaattccata acgtgggatt tatccattta aaatcaaaac
     2401 aatatgtaaa atcccacatc taaattatca cagacaagag gtttacatga ccgagaaact
     2461 gaaaggaacg gctagtgttc tgcatgaaac caaaacttat gaggaattgg ttgagaagca
     2521 ttcagtagaa gtcgctaacg gcttgctggc aaatgcgatc aatactgctt tgcctaacgc
     2581 aggaataact tcaaatgacg tcgccggatt cagcaaggtg acgatagcct tgcgcacagg
     2641 agaagttgat ctagccaaaa cagcgaaaga agcgaacgct gatgctgcag ctgtttcagc
     2701 aaatattatt gcgggattga aagcatcaca aaagagcaag gatgaaataa agtgattatc
     2761 agcagggtaa aaagccacct gaatggtggc ttttttatgt ccataacggg ctgtactcac
     2821 tataacatcc gttgtgcgat gctaatgaga aaatgcaatg caggcttcag tcgtaggccc
     2881 tgcatcgatg gaagatagtg gctacagcgg catctgaccc ggagacaacc tatccacagc
     2941 gattcaatta gtgagctacg taaagtccgt gaactttacc attattgtag tcaaaggaat
     3001 gctcaataat cttgtagaac tcatcatcat tgagctcaaa cttcctgaaa attgagtacg
     3061 atacaagatc cgcaagctga atcaaccttg acgccttgga atccaaaaac aaaggcactt
     3121 cagagaagtt acgaagtttt ccatatccat atccagtatc tttaaacgta cgagcaagag
     3181 actgaatact tttctctgtt gacgatttat caaaaatggc cacccctcga gatgttgctc
     3241 cttggtaatg taatcggctc aaatacatgt cgaaacgaga cgatatctga taaaaagatt
     3301 ctgttattac gtcctttcca cctaaggatc ccttgggtac aacacacgca aatatacgga
     3361 tatcccgatg cttttgagtc aggagtgtta ggcaatcttt gatcgcttgt ttcctgtcat
     3421 cgaaaggaaa atttttccag ccatctcgcc cacctctcat aggcgaacca tgcaattctc
     3481 tttcatacgg atcatcagta ttaaatctgg ctgcgatagc attcatctct tgctctatcc
     3541 aatgagtctg cttttcaaac actgagatac cagaaaggac aaaatgatta agtgtagggt
     3601 ctgatggtgt accagactca tcaacgtata agagatgcat cgaagattcc ttaaacgaaa
     3661 aaggccgcgc aaatgcgcgg ccttttcata aattaggcaa gccagtgcga taaaaatcgc
     3721 atacaccgct atgggcagcg aactgactca gtgttgagca taacaggcaa acgcatattt
     3781 accaaaataa tttatacaca tatcataatc atgagcaatt aaataacata aattcaatcg
     3841 gatagttgct tcatcgtcac tcttatttac cataacatcc gttatcagca ccgcctgaga
     3901 ggccctcaga gcgtttctga cggaaaaccg gtaaaacagg caacaaacca cccgaaaacc
     3961 cgccagaaac gcacaggctc tgtttttacg gcatgcatga gtatgcgcac aagtgcatag
     4021 cgcggaaatt gacaccattc agccagggga agtcctgttt ccggcgttct tctcctccga
     4081 aaacggtgaa cggggacgca atttattgcg tggccgtgaa gcgttgccgg cgcagccgga
     4141 aaaccggttt tcagcacgtt caggaatcag gttcgtcgac ggccggcaat cacgttatgg
     4201 caagtcacca gacgactcac cacacgattc accggcgatt cgactcgtga cttgactcta
     4261 gagtcactac ggtcaaaaaa acgccaaagc gacgattcga ctctagagtc aagtcgtcat
     4321 aagttactga tagtgtggag tgagtcgtcg atgactctat gacgagtcgt cggcaagtcg
     4381 tacacgaatc gccgacgact tggattcacc ttacagaaag taatactgcg taatttaata
     4441 acccacaaat aactgatatt aatgagttat cttcaaaatt ttaattttgc gtggggtgtg
     4501 ggtattttta gtggtgaggt gcgttcagag atctgacgat ttttgggaag gttcaggaac
     4561 tccccgggat ggccggagag gaaaactgaa gcatgacggg gtcaggattt tttccagaat
     4621 ttccaccatg gcgccgggga ttcagttaat tttgcctggt gattttcaag aaggagcatg
     4681 gcctgtttga ggctgtcaat gtgcgaatcc ttggacaaaa gtaaggtgtt caggtgttca
     4741 atctcctgtt tcagatgacg aatcacctgt tcactctggt cagcagaggc tgtatcacgc
     4801 tgttcagcga cctgtccaga atggtgttca cccttcggtt gttcaaaggg accaaagaca
     4861 cgtaaaagct ctgaagtatc taccattttt gcattgcgtt caccgctaca ggtggacagg
     4921 tcacctgctt taattaacct gtgcagtgtt gttctactct tacccgtcag tcgggcagcc
     4981 tcactaatag aaactctggc catcagttac catcctgtaa tgcatccagt cttgaggaca
     5041 gtgtacggaa aagatgctcc gcatcatcgt ggagtttctc acaaaggtcg gcctcgacat
     5101 cgagatcaag ctcattaagc ttctccagca ggagcagaga ctgattctgg atgaatttag
     5161 ccatgttcag cgctgttttc tgttgtttca tcataagagg cctcagagcg tcagtgctca
     5221 gtgtagggat gttctctttt ccgcttcctc gctcactcag tcgctatgct cctgccgttc
     5281 ggctgcggcg agcggcagga gcatgcgtgt aaaagctcga gaaaaccgag cggtcgcgtg
     5341 acggggaaaa ggaaaggccg cttagcggcc gtttttccat aggctccgcc cccctgacaa
     5401 gcatcacaga agctgacgct caaatcagtg gtggcgaaac ccgacaggac tataaagata
     5461 tcaggcgttt ccccctgatg gctccctcgt gcgctctcct gttcctgcca ttcggtttac
     5521 cggtgtcatt ccgctgttat ggccgcgttt atctcattcc acgcctgaca ctcagttccg
     5581 ggtaggcagt tcgctccaag ctggactgta tgcacgaacc ccccgttcag cccgactacc
     5641 acgttgtccc ggtaactatc atcttgagtc caacccggaa cagacacgaa aaatcgccag
     5701 tggcggtagc cattagtaag aggattcacg gag
//
