LOCUS       NZ_CP037958             3373 bp    DNA     circular CON 30-MAY-2024
DEFINITION  Salmonella enterica subsp. enterica serovar Goldcoast strain
            R18.0877 plasmid pR18.0877_3.3k, complete sequence.
ACCESSION   NZ_CP037958
VERSION     NZ_CP037958.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN11129919
            Assembly: GCF_004358925.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. enterica serovar Goldcoast
  ORGANISM  Salmonella enterica subsp. enterica serovar Goldcoast
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 3373)
  AUTHORS   Chiou,C.-S., Hong,Y.-P., Wang,Y.-W. and Chen,Y.-S.
  TITLE     Multidrug resistant Salmonella enterica subsp. enterica serovar
            Goldcoast strain R18.0877
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3373)
  AUTHORS   Chiou,C.-S., Hong,Y.-P., Wang,Y.-W. and Chen,Y.-S.
  TITLE     Direct Submission
  JOURNAL   Submitted (14-MAR-2019) Center for Diagnostics and Vaccine
            Development, Centers for Disease Control, Taiwan, No.20, Wenxin S.
            3rd Rd., Nantun Dist., Taichung City 408, Taiwan
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 27-NOV-2018
            Assembly Method                   :: unicycler v. v0.4.6
            Assembly Name                     :: R18.0877
            Genome Representation             :: Full
            Expected Final Version            :: No
            Genome Coverage                   :: 100.0x
            Sequencing Technology             :: Illumina MiSeq; Oxford Nanopore
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_004358925.1-RS_2024_05_30
            Annotation Date                   :: 05/30/2024 03:21:22
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,751
            CDSs (total)                      :: 4,636
            Genes (coding)                    :: 4,504
            CDSs (with protein)               :: 4,504
            Genes (RNA)                       :: 115
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 84
            ncRNAs                            :: 9
            Pseudo Genes (total)              :: 132
            CDSs (without protein)            :: 132
            Pseudo Genes (ambiguous residues) :: 0 of 132
            Pseudo Genes (frameshifted)       :: 43 of 132
            Pseudo Genes (incomplete)         :: 98 of 132
            Pseudo Genes (internal stop)      :: 31 of 132
            Pseudo Genes (multiple problems)  :: 35 of 132
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP037958.1.
            Bacteria and source DNA available from Linkou Chang Gung Memorial
            Hospital.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3373
                     /organism="Salmonella enterica subsp. enterica serovar
                     Goldcoast"
                     /mol_type="genomic DNA"
                     /strain="R18.0877"
                     /serovar="Goldcoast"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:260678"
                     /plasmid="pR18.0877_3.3k"
                     /geo_loc_name="Taiwan"
                     /collection_date="2018"
                     /collected_by="Centers for Disease Control, Taiwan"
                     /subtype="358"
     gene            complement(149..382)
                     /locus_tag="E2R47_RS24485"
     CDS             complement(149..382)
                     /locus_tag="E2R47_RS24485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000137389.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="WP_000137389.1"
                     /translation="MTELEGHLLNALEHLQQDYMRRLNEWESAFAELQKMHEVTQRNNA
                     ILNERVVILSQQVQRLAGQVDRLSRLFIANNS"
                     /name="MbeD family mobilization/exclusion protein"
     gene            complement(389..949)
                     /locus_tag="E2R47_RS24490"
     CDS             complement(389..949)
                     /locus_tag="E2R47_RS24490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000067488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeB family mobilization protein"
                     /protein_id="WP_000067487.1"
                     /translation="MSNLLQMGTDFEKKLKERAASTENMLNSEFRKLEESVDKALSLNR
                     QKIRDAISEHTTSVKKQLDTLSTTVSMQFSTTEAELSRQQKKLLWRVIKGRILFPALTA
                     LSVTGGIFLGCWGLMEWQESKIAKNILTIREQENTLAKLEAKTWGVTFVNGENGKFLVL
                     PDGVKGENTWTVGDKNAVRLVRE"
                     /name="MbeB family mobilization protein"
     gene            complement(<981..1637)
                     /locus_tag="E2R47_RS24660"
                     /pseudo=""
     CDS             complement(<981..1637)
                     /locus_tag="E2R47_RS24660"
                     /inference="COORDINATES: protein motif:HMM:NF015397.4"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            complement(1627..1950)
                     /locus_tag="E2R47_RS00010"
                     /old_locus_tag="E2R47_00010"
     CDS             complement(1627..1950)
                     /locus_tag="E2R47_RS00010"
                     /old_locus_tag="E2R47_00010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000956000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="WP_024132211.1"
                     /translation="MLTIRVTDEEHARLLERCEGKRLAEWMRRVCLGEPVARTGKLPTL
                     SPPLLRHLAAIGNNLNQTARKVNSGQWSSIDRVHVVAALMAIEGELRQLRQAVREQGVR
                     DDS"
                     /name="MobC family plasmid mobilization relaxosome protein"
     gene            2014..2205
                     /locus_tag="E2R47_RS00015"
                     /old_locus_tag="E2R47_00015"
     CDS             2014..2205
                     /locus_tag="E2R47_RS00015"
                     /old_locus_tag="E2R47_00015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000165979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_000165979.1"
                     /translation="MTKQEKTALNMARFIRSQTLTLLEKLNDLDADEQADICESLHDHA
                     DELYRSCLARFGDDGESN"
                     /name="Rop family plasmid primer RNA-binding protein"
     Typing          complement(2287..2367)
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="87.805"
                     /coverage="93.0"
                     /evalue="8.68e-18"
     Typing          complement(67..1637)
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="92.628"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 tttgtttcgc tcgccccagc cgtcgaactg gtcaaaatgg caagatttcg tcacttcccc
       61 ggtcacatct ccattgatgg cccactccga acccgtgccg cgcgttcctg tacctcatgt
      121 ctgtaccggg cacgctcctg ttcatccctt agctgttgtt cgcgataaat aaccgactca
      181 agcgatccac ttgcccggct aatctctgca cctgctgact caatatcacg acgcgctcgt
      241 tcagtatcgc gttgttccgt tgcgtaacct cgtgcatctt ctgcaattcc gcgaaggcgc
      301 tctcccactc gttcagccgc cgcatatagt cctgttgcaa atgctctaag gcgttcagca
      361 aatgcccttc cagttccgtc atactcgttt actccctgac cagcctcacg gcgttcttgt
      421 cgcccaccgt ccaggtgttt tcccctttca ccccgtccgg caacaccaga aatttcccgt
      481 tctcgccatt gacgaacgtc accccccagg tttttgcctc gagtttcgcc agcgtgtttt
      541 cctgctctct gatagtcagg atatttttcg caatcttgct ttcctgccac tccatcagcc
      601 cccagcaccc caggaaaatg ccgcccgtga cgctgagcgc ggtcagcgcc ggaaacagta
      661 tccgcccttt gatcacccgc cagagcagtt ttttctgctg ccgggacagt tcggcctctg
      721 tggtgctgaa ctgcatgctc acggtggtgc tcagcgtatc cagttgcttt ttcacggatg
      781 ttgtatgttc gctgatagcg tctctgattt tctgcctgtt taagctcaat gccttgtcta
      841 cagactcttc gagcttcctg aactcgctgt tcagcatgtt ctcggtagaa gcggctcgct
      901 ctttcagttt cttctcgaag tctgttccca tttgtaaaag attgctcata cagcgccccc
      961 tttagcctga gattccgccc cccctccggg tcggcaatac tgatgctgct tttggttgtc
     1021 ctcaccacct caaaacctgc ctctgtaagc gcctctgtga catcctgacg cgtttttatt
     1081 gctccggcat ggtaaagagc ctcaagaccc cgtgtaatcg cttctgcggc ctcctgtttc
     1141 gcttttggca gattatttgg cgtgacaagc gtccgtctgt tctccggtgc gttcgggtca
     1201 cgcagcccgt aatgatgatt aaccagcgtc tgccaggcat ttatcctcgg cctgtccgcg
     1261 cggtcgtagt acggctggag gcgcttaccg ctctgtagct ccatgttcgg gatgacaaaa
     1321 ttcagttcga gccgcccctt atcctggtgt tccacccaga gaatgctgta ctggtctttt
     1381 tcgagaccgg gcataagaac acgctcaaag ctcgtcatca ctctttcgcg ttcacccggc
     1441 ggtaactcct tctccgcgaa cgacagaacg cctgaagtgt atttcttcga gaatggcgtg
     1501 gaatcaatga gttcccgcac ttcttccggg ttaccccgga gcaccgttgc gccttcgcgg
     1561 ttacgctccc gccccagcag gtaatcgacc gggccacttc caccgccttt ccccctggca
     1621 tgaaatttaa ctatcatccc gtaccccctg ttccctgaca gcctgccgca actgacgcaa
     1681 ttcaccctcg atggccatca gtgcggccac cacatgaacc cggtcaatcg aagaccactg
     1741 gccgctgttc accttccggg ctgtctggtt caggttgttc ccgatggcag ccagatgccg
     1801 cagcaatggc ggcgatagtg tcggcagttt tcctgtgcgt gcaaccggct cccccagaca
     1861 gacccgccgc atccattccg ccagtcgttt accctcgcag cgttccagta accgggcgtg
     1921 ctcctcatcg gtaacccgta tcgtgagcat cttctcgcgt ttcatcggta tcattccccc
     1981 taacaaatcc cccatacaag gagccttaag accatgacca aacaggaaaa aacagccctt
     2041 aacatggctc gctttatcag aagccagacg ctaaccctgc tggaaaaact caacgatctg
     2101 gacgcggacg aacaggcaga catctgcgaa tcacttcacg accacgccga cgaactctac
     2161 cgcagttgcc tcgcacgctt cggcgatgac ggtgaaagca actgaaacat gcagctcccg
     2221 gagacgttca cagcttgcct gtgagcggat gccgggagca gacaagcccg ccagggcgcg
     2281 tcagtgcggg tgtcggggcg cagccctgac ccagttcaca gagcgatagc gatgtgtata
     2341 ctggcttatc tcattttgca tcggtgcaga catggatggg aagtgcacca tgtcaggagt
     2401 aaaaagccgc acagatgtaa aaacagcgca cccgataaac atcacacacg cggacactgg
     2461 cacaggcgcg taagtgcaca atgcttgcat ctgtgactct tccgcttcct cgcccactcg
     2521 ctcactacgt tcggtcgctg gggctgcggc gagcggtggg atcactctcg ttgtgatgca
     2581 gatccgtttt ttttttttgc actggagtta tcaggagttg cggtgcacat gggatcgtgc
     2641 gatatgccgg atggtgaaag gttggaggga acggcaacaa ctcacccctc ccagtgaagg
     2701 gacgggtagt ttgccgctct cgatatgccg gacggagcca aggccatcga tcacggggcg
     2761 cgtcagtgga agaacccgcg cctgcgtgac gtatgcgtct tcgccgcacc atctcacccg
     2821 tcacgccacc acataccggg aactgccgcc aaggtctaac tcaaccaatc tagccgcgct
     2881 acatacggtt tttgtggcaa ctcatcaggt gtccgctgtc gatgaaactc tctgcgccgg
     2941 tagcggaact ctcacgcgtg cggtcgccgt cgtcacagct cccccaaccg caaacgattc
     3001 tcgcaaatac gcaagtatct gcaaaaacag gtttttttcg gggttcctgg gagactgtgc
     3061 tgttgaaaaa ttcttgaaga atacagaagg ctcatgcaaa ctgaatgaac tggtttctgt
     3121 tgtggatctc aacagtttcc acaggaacat tgaggaggtc agagacctca atgaacccga
     3181 aacagctcgc cttcctggcg agctgttttc gttctacgcc cgccgacgaa agatcgcaag
     3241 tgcaataacg agatttttca cgtctttacg ctcaaaaagt aaaaaaacca tgttttcccc
     3301 tggctgaatc cccaaaaacg cgtgaaatgc gttttcagga tgttgcatag ctatgcacaa
     3361 atacggcaca cga
//
