LOCUS       NZ_CP036370             5596 bp    DNA     circular CON 05-JAN-2024
DEFINITION  Klebsiella pneumoniae strain WCHKP115068 plasmid p3_115068, complete
            sequence.
ACCESSION   NZ_CP036370
VERSION     NZ_CP036370.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN09688180
            Assembly: GCF_004322795.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 5596)
  AUTHORS   Hu,Y., Long,H., Feng,Y. and Zong,Z.
  TITLE     The complete genome of Klebsiella pneumoniae strain WCHKP115068
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5596)
  AUTHORS   Hu,Y., Long,H., Feng,Y. and Zong,Z.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-FEB-2019) Center of Infectious Diseases, West China
            Hospital, Sichuan University, Guoxuexiang 37, Chengdu, Sichuan
            610041, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 20-FEB-2019
            Assembly Method                   :: Unicycler v. 0.4.7
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 200.0x
            Sequencing Technology :: Illumina HiSeq; Oxford Nanopore MiniION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 01/04/2024 22:29:34
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,647
            CDSs (total)                      :: 5,526
            Genes (coding)                    :: 5,385
            CDSs (with protein)               :: 5,385
            Genes (RNA)                       :: 121
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 85
            ncRNAs                            :: 11
            Pseudo Genes (total)              :: 141
            CDSs (without protein)            :: 141
            Pseudo Genes (ambiguous residues) :: 0 of 141
            Pseudo Genes (frameshifted)       :: 43 of 141
            Pseudo Genes (incomplete)         :: 95 of 141
            Pseudo Genes (internal stop)      :: 15 of 141
            Pseudo Genes (multiple problems)  :: 12 of 141
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP036370.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..5596
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="WCHKP115068"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="p3_115068"
                     /geo_loc_name="China: Chengdu, Sichuan"
                     /collection_date="2018"
     gene            complement(61..306)
                     /locus_tag="DVJ72_RS30600"
     CDS             complement(61..306)
                     /locus_tag="DVJ72_RS30600"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_032433971.1"
                     /translation="MQPQSPVHHGLPRIDARTVCPVVVRLETPAGQQFRVRYQKIQFQP
                     PLVPVFNPQHAVLVFIESGHQNPLEARHQLFTLAGR"
                     /name="hypothetical protein"
     gene            557..1066
                     /locus_tag="DVJ72_RS30350"
     CDS             557..1066
                     /locus_tag="DVJ72_RS30350"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeB family mobilization protein"
                     /protein_id="WP_032433972.1"
                     /translation="MNSLLTLAKDLEQKSKAQQQSTGEMLKAAFSEHEKSVRAELSESG
                     KRISAAIRAHEQGMSAAMQSNRLSVMRMVGRTWLTITMVSGLLFASLSGVLWYQGSLIA
                     SNLAEIDRQNAALSKLNAKTWGVTYLEDSNGRFLVLPKGTAVDRTQSWTVGNGRSKQNA
                     LRLVKE"
                     /name="MbeB family mobilization protein"
     gene            1073..1285
                     /locus_tag="DVJ72_RS30150"
     CDS             1073..1285
                     /locus_tag="DVJ72_RS30150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000137423.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="WP_021527181.1"
                     /translation="MTELEKQLLSALEQLQQDYSKRLDEWESAFGEWRKMSGLMQRENA
                     ALSERVTRLSQQVERLSGQLQRLSR"
                     /name="MbeD family mobilization/exclusion protein"
     gene            1952..2176
                     /locus_tag="DVJ72_RS28840"
                     /old_locus_tag="DVJ72_28845"
     CDS             1952..2176
                     /locus_tag="DVJ72_RS28840"
                     /old_locus_tag="DVJ72_28845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000879771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6290 family protein"
                     /protein_id="WP_000879771.1"
                     /translation="MLAIRLSDEIESRLDSLAKQTGRTKTFYAREAILAHLEDLEDYYL
                     SAETAARVRRGDEAVHSSEDVRKSLGLDD"
                     /name="DUF6290 family protein"
     gene            2160..2426
                     /locus_tag="DVJ72_RS28845"
                     /old_locus_tag="DVJ72_28850"
     CDS             2160..2426
                     /locus_tag="DVJ72_RS28845"
                     /old_locus_tag="DVJ72_28850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000262326.1"
                     /GO_function="GO:0008657 - DNA topoisomerase type II
                     (double strand cut, ATP-hydrolyzing) inhibitor activity
                     [Evidence IEA]; GO:0042803 - protein homodimerization
                     activity [Evidence IEA]"
                     /GO_process="GO:0030541 - plasmid partitioning [Evidence
                     IEA]; GO:0051290 - protein heterotetramerization [Evidence
                     IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="WP_004197762.1"
                     /translation="MVWTINYSDRALKSLRKMDKQNARRIVDFMSLRIAVAADPRQSGK
                     PLKGELGEFWRYRVGDYRVLCEIRDDELVILAATIGHRREVYD"
                     /name="type II toxin-antitoxin system RelE/ParE family
                     toxin"
     gene            complement(2496..2846)
                     /locus_tag="DVJ72_RS28850"
                     /old_locus_tag="DVJ72_28855"
     CDS             complement(2496..2846)
                     /locus_tag="DVJ72_RS28850"
                     /old_locus_tag="DVJ72_28855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004197756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_004197756.1"
                     /translation="MYWLIAFLAFIFPGRSFADGYTAYYRCNGTQEASLTVKDNKLSMV
                     VGLSKFNRQLDTYRFKEKGIEVVMQRAASDDNSEAIMSFIMPDVNNMTLLVKNNGYIIV
                     KTTCWLTKTDKQ"
                     /name="hypothetical protein"
     gene            complement(2912..3457)
                     /locus_tag="DVJ72_RS28855"
                     /old_locus_tag="DVJ72_28860"
     CDS             complement(2912..3457)
                     /locus_tag="DVJ72_RS28855"
                     /old_locus_tag="DVJ72_28860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004197758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_023317533.1"
                     /translation="MFFKRYLTEKEIYKAALPIVRLQGRVNTSLRFLSKYSDVNKNGLI
                     ALHLNLLHFISYNIHGVESLKITQAGINKAVQQSPHADEIKNIAQAIGRKGPEYIEGLI
                     RNPWGKKNDNPLIFIMSIEESIKETLNSGYMLYRVAPITEGEAAAFMDVLKQLLLFEDN
                     FRLFGRDLVYKIEKLKIR"
                     /name="hypothetical protein"
     gene            complement(3483..3809)
                     /locus_tag="DVJ72_RS28860"
                     /old_locus_tag="DVJ72_28865"
     CDS             complement(3483..3809)
                     /locus_tag="DVJ72_RS28860"
                     /old_locus_tag="DVJ72_28865"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_050516389.1"
                     /translation="MRERTNIMLDIGLKQSLQRLSNKTKMSLSDLINQRLSGSLSVEER
                     IGEKPEWMRNLDPYLANHFSNIELPLPSPLKEYQEKMDEIDSIINDMMVLKEYFRAKFY
                     DEIK"
                     /name="hypothetical protein"
     gene            complement(4167..4325)
                     /locus_tag="DVJ72_RS30780"
     CDS             complement(4167..4325)
                     /locus_tag="DVJ72_RS30780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005761324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="WP_071596352.1"
                     /translation="MHEPPVQPDCCALSGNYHLESNPDGHAKTPLAAAIGNWIYTREIL
                     RGLEVGA"
                     /name="replication initiation protein"
     gene            4965..5141
                     /locus_tag="DVJ72_RS30155"
     CDS             4965..5141
                     /locus_tag="DVJ72_RS30155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004197757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_004197757.1"
                     /translation="MQKPKKKPLVVKKRSWHPAVMANLMRQAQEEDYRREQMAELERSA
                     RSHFADIGGEDGG"
                     /name="hypothetical protein"
     gene            5131..5475
                     /locus_tag="DVJ72_RS28870"
                     /old_locus_tag="DVJ72_28875"
     CDS             5131..5475
                     /locus_tag="DVJ72_RS28870"
                     /old_locus_tag="DVJ72_28875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006122514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="WP_062955149.1"
                     /translation="MAVKRTRFLGIRVTDGEYQQLLERCNGRQLAVWMRETCLDTRPAR
                     SLRLPSIDPVLLRQLAGMGNNLNQIARKINGGQWSGADRVQVVAALMAIDAELERLRHA
                     VLEKGADDDR"
                     /name="MobC family plasmid mobilization relaxosome protein"
     Typing          4800..4879
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="90.361"
                     /coverage="97.0"
                     /evalue="1.1100000000000001e-21"
     Typing          complement(4217..4614)
                     /name="rep_cluster_2370"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="89.526"
                     /coverage="91.0"
                     /evalue="3.03e-139"
     Typing          2..1401
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="99.786"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 gacgcctcgc cctacgccaa aaagtacacc tccggcgtcc tgtcttttgc tgaacaggat
       61 ttaccgcccg gccagcgtga aaagctgatg gcgagcttcg agcgggttct gatgcccgga
      121 ctcgataaag accagtacag cgtgctgtgg gttgaacacc gggacaaggg gcggctggaa
      181 ctgaattttc tggtaccgaa cacggaactg ctgaccggca ggcgtctcca gccgtactac
      241 gaccgggcag accgtccgcg catcgatgcg tggcagaccg tggtgaacgg gcgactgggg
      301 ctgcacgacc cgaacgcacc ggagaaccgg cgcgcgctgg tgacgccatc ttcgttaccc
      361 aaaacgaagc aggaagccgc agaggctatt acgcggggct tactggccct cgcctcgtca
      421 ggggagctta aaacgcgtca ggacgtcact gaggcgctgg aaagcgcagg ttttgaggtc
      481 gtgcgcacca caaagagcag catcagcatt gccgacccgg acggagggcg aaacatccga
      541 cttaagggag ccatctatga acagtctttt aacgctggcg aaggacttag agcagaaatc
      601 gaaagcgcag cagcagagta ccggcgaaat gctgaaagcc gcattcagcg agcacgagaa
      661 gtctgtcaga gcggaactga gcgaaagcgg gaagagaatc agcgccgcca tccgcgccca
      721 cgagcagggt atgagcgcgg ccatgcagtc gaaccgcctg agcgtgatgc gtatggtcgg
      781 gcggacatgg ctgaccatca cgatggtgtc aggactgctg ttcgccagcc tgagcggggt
      841 gttgtggtat caggggagct tgatagcgtc aaatctggcc gaaatcgacc ggcagaacgc
      901 agcgctgtcg aagctgaacg cgaagacctg gggcgtgacg tacctggaag acagcaacgg
      961 acgttttctg gtgctgccga aggggacggc cgtagacagg acgcagagct ggacggtcgg
     1021 gaacgggcgg tcgaagcaga acgcgctgag actggtgaag gagtaagtgc cgatgaccga
     1081 gctggaaaaa cagttgctga gcgcattaga gcagctacag caggactact cgaaaaggct
     1141 ggacgagtgg gagagcgcct tcggggaatg gcggaaaatg tcagggctta tgcaacggga
     1201 gaacgcggcg ctgagcgagc gcgtgacgcg cttgagtcag caggtggaac gcttgagcgg
     1261 gcaactgcag cgtttgagcc ggtagtgcag cgtcatgaga tggccgtggc cgcagaacgg
     1321 gcgcacgagc aacggcagca cgaaaaggaa ctgacggaag cgcgttcccg gcagcgaagc
     1381 tatgacggtc cgtcgctggg ctgaaatgca ggaaaacagg gttctcatcg ggcatttacg
     1441 ctgaaaccgg atgtcattca cctggctgca tggctatgca gccaggtaaa atttatctgt
     1501 cgcgaacggg gcggtttatc gggtggtttg ttgccggttt tacctgactg ccaccccgtt
     1561 cgcggcgaac ccgtccgggg cggtgcgggc aacgggtgtt atgtttaatc agcgtgaacg
     1621 gcagatacaa aaaagccccg gagggctttt aactactgac ttattttttt gaagatttgc
     1681 tgggtttcaa tttgtcagta tttcccggcg tttttttatt gtcacgctgg cgtttatcag
     1741 gttcccctgt tgaatcggca attcgtttcg gacccggctt aagacccata atcgttatcc
     1801 tttcaatagt taagaggaaa gccctcaagc tagatatatt gaccgcgtta cggattatca
     1861 agaggggcta acaagattat tttttgttct tttaggttga ttgtggtact gttgatatac
     1921 atgtatagca aatggtgttc gggaggttta tatgcttgct atccggttat ctgatgagat
     1981 tgagtcccgt ctggactcgc tggcgaagca aaccggcaga acaaagacgt tttatgcgcg
     2041 ggaagcaata ctggcgcatc tggaagacct ggaggattat tatctttcag cagaaactgc
     2101 tgcacgcgtt cgccgtggtg atgaagcagt gcattcgtct gaagacgtga ggaagtcact
     2161 tggtctggac gattaactat tccgatcggg cgctcaaatc gttacgcaag atggacaaac
     2221 agaacgcacg acggattgtg gattttatga gtttacgcat tgcagttgct gccgatcctc
     2281 gccagtcagg gaagccgctc aaaggtgagc tgggcgagtt ctggcgctat cgggtgggag
     2341 attatcgcgt tctgtgtgag atccgagatg acgagcttgt tatccttgcc gccacgattg
     2401 gacatcgccg cgaagtttac gactgaagcc cgctatgcgg gcttttttga tgccgacaac
     2461 aggtattatg gtaaatactc gactaactac gtgttctact gtttgtcggt tttagttaac
     2521 cagcaggttg tcttaacgat aatgtagccg ttatttttaa ctaataaggt catattgtta
     2581 acgtcaggca taataaaaga cattatggcc tcagagttat catcagaagc agctctctgc
     2641 attactactt cgattccctt ttctttgaat ctataagtat ccagttgcct attaaactta
     2701 gaaagaccta caaccatact tagtttgtta tctttaacag taagagatgc ttcctgagta
     2761 ccattacatc ggtagtaagc ggtgtaaccg tcagcaaaag atcgaccggg gaatataaat
     2821 gctaggaacg caattaacca atacatagtt gagaatcttg gtattacaca tttcactatc
     2881 ctctctttca tttttcgttc accatacttt gttatctgat ttttaatttt tctattttat
     2941 aaaccaagtc tctaccaaaa aggcgaaaat tatcctcaaa taataataat tgtttaagaa
     3001 catccatgaa agcagctgct tcaccctcag ttatgggagc tactctatat aacatataac
     3061 ctgagttaag ggtttctttt atactttctt caatgctcat tataaatatt agtggattat
     3121 catttttctt cccccatggg tttctaatta atccttcgat gtactcaggt cctttgcgtc
     3181 ctattgcctg cgcaatattt tttatttcat ctgcgtgagg gctttgttgt acagctttgt
     3241 ttatgcctgc ttgagtgatt ttcagagact ctacaccgtg tatgttgtat gagataaaat
     3301 gtaataaatt aagatgcaat gcaattaatc catttttgtt tacatctgag tatttggata
     3361 aaaaacgtaa tgaagtgtta actctccctt gaagcctaac aattgggagt gctgccttgt
     3421 atatttcctt ctccgttaaa taccgtttaa aaaacataat tctccgcctc cgtatagcgt
     3481 gcctatttta tttcgtcgta aaacttagct ctgaaatatt cctttagaac catcatgtca
     3541 ttaataattg aatctatctc atccattttt tcttggtatt cttttaatgg tgaagggagc
     3601 ggtaactcaa tatttgaaaa gtgattggcg agatagggat caaggtttct catccattca
     3661 ggcttttcgc caatgcgttc ttcaactgaa agtgaacctg ataatctctg gttaataaga
     3721 tcacttagac tcattttggt tttattcgaa agccgttgta aggattgctt taatcctata
     3781 tctagcatga tatttgttct ttctctcatt accccccctt gctattgcgt tttttgttgc
     3841 gcacaaagct accattgcgc attaagaaac gcaataaaaa aggagggagg gagtggtttg
     3901 tacatgatgt gcagtgcgct gagggcatca gtggcgggtg tttttccgtg ggatggatgg
     3961 agctccgggg ataacagaac tgacgatcat ttaaaggatc ttcttgagat cctttttttc
     4021 tgcgcgtaat ctcttgcact gtaaacgaaa aaaccgcctg gggaggcggt ttgatcgaag
     4081 gttaagtcag ttggggaact gcttaaccgg gtaactgggt atacgagacc gcagatacca
     4141 aaactgttct ttcagtgtag ccgcagttag gcacccactt caagacctct caatatctct
     4201 ctcgtatata tccagttacc aatggctgct gccagtggcg tttttgcgtg tccgtccggg
     4261 ttggactcaa gatgatagtt accggaaagg gcgcagcagt cgggctgaac ggggggttcg
     4321 tgcatacagc ccagcttgga gcgaacgacc taaaccgagc cgagatacca gcagcgtgag
     4381 ctatgagaaa gcgccacgct tcccgaaagg gaaaaaggcg gaacaggtat ccggtaaacg
     4441 gcagggtcgg aacaggagag cgcacgaggg agccgccgga gagaaatcac cggcatcttt
     4501 aagtcctgtc gggtttcgtc ctcctctgac ttgagcgtcc atttctgtga tgctcgtcag
     4561 gggaggcgga gcctatggaa aaacggcaac gccgcatcct tttctccggc cctttctgat
     4621 ttgagcgcct ttgctttatc ccgttatccg tgagtcggtc acgcccgccg cagccgaacg
     4681 gcaggagcgc agctaccgag tgagcgagga ggcgtcattt catctgtccg tgcatggtat
     4741 tgcggacgct cctgagccac atatcacacc tgccacatga ggcactttca tgaatcgtgc
     4801 tctcatgcca acatagtaag ccagtataca cagcgtaaac gctgtgactg gttcagggct
     4861 gcgccccgaa acccgctaac accactgacg cgctggcgct tgtccaacgc cggagcgacc
     4921 cggaaaactt ttccgtgccg tccggcgttt gcgaaggagg gataatgcag aagccgaaga
     4981 agaagccgct cgtcgtaaaa aaaagatcct ggcatccggc agtgatggca aatctgatgc
     5041 gtcaggcaca ggaggaagat taccgccggg agcagatggc agagcttgag cgttcagccc
     5101 ggtcacattt tgcggatatc ggaggagagg atggcggtta agcgtacccg ttttttaggt
     5161 atccgggtga ccgatgggga gtaccagcag ctgctggagc gctgcaatgg aaggcaactg
     5221 gcggtgtgga tgcgggaaac ctgtctcgat acgcgcccgg cgcggtcgtt gcggctgccg
     5281 tccatcgatc cggttttgct gcgccagctt gccgggatgg ggaacaacct caaccagatc
     5341 gcccggaaaa ttaacggcgg ccagtggtca ggcgctgacc gggttcaggt ggtggccgcg
     5401 ctgatggcca ttgatgccga actcgagcgg ctgcggcatg ccgtgctgga aaagggggca
     5461 gacgatgatc gttaagtttc atccgcgagg gcgaggcggc ggtgccgggc cggtggatta
     5521 tctgctgggg aaagaccgcc agcgcgacgg ggccatcgtc ctgcagggaa agccggagga
     5581 ggtccgggag cttatc
//
