LOCUS       NZ_CP036334             4994 bp    DNA     linear   CON 05-JAN-2024
DEFINITION  Klebsiella pneumoniae strain BA28434 plasmid punnamed_4_VBA28434.
ACCESSION   NZ_CP036334
VERSION     NZ_CP036334.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN08389138
            Assembly: GCF_002909775.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 4994)
  AUTHORS   Veeraraghavan,B., Shankar,C., Vasudevan,K., Venkatesan,M. and
            Narasimman,V.
  TITLE     Klebsiella pneumoniae BA28434 hybrid assembly
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4994)
  AUTHORS   Veeraraghavan,B., Shankar,C., Vasudevan,K., Venkatesan,M. and
            Narasimman,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-FEB-2019) Clinical Microbiology, Christian Medical
            College, Ida Scudder Road, Vellore, Tamil nadu 632004, India
REFERENCE   3  (bases 1 to 4994)
  AUTHORS   Veeraraghavan,B. and Shankar,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-JAN-2018) Clinical Microbiology, Christian Medical
            College, Ida Scudder Road, Vellore, Tamil nadu 632004, India
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 2019
            Assembly Method :: Canu v. 1.7; Unicycler hybrid v. 0.4.6
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 47.4x
            Sequencing Technology :: Oxford Nanopore MiniION; IonTorrent
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 01/04/2024 22:44:14
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,666
            CDSs (total)                      :: 5,539
            Genes (coding)                    :: 5,312
            CDSs (with protein)               :: 5,312
            Genes (RNA)                       :: 127
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 88
            ncRNAs                            :: 14
            Pseudo Genes (total)              :: 227
            CDSs (without protein)            :: 227
            Pseudo Genes (ambiguous residues) :: 0 of 227
            Pseudo Genes (frameshifted)       :: 139 of 227
            Pseudo Genes (incomplete)         :: 94 of 227
            Pseudo Genes (internal stop)      :: 23 of 227
            Pseudo Genes (multiple problems)  :: 26 of 227
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP036334.1.
            Bacteria and source DNA available from Department of Clinical
            Microbiology, Christian Medical College, Vellore, India.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..4994
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="BA28434"
                     /isolation_source="blood"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="punnamed_4_VBA28434"
                     /geo_loc_name="India"
                     /lat_lon="12.9165 N 79.1325 E"
                     /collection_date="2017"
                     /collected_by="Christian Medical College, Vellore, India"
     gene            504..695
                     /locus_tag="C3E96_RS28965"
                     /old_locus_tag="C3E96_028965"
     CDS             504..695
                     /locus_tag="C3E96_RS28965"
                     /old_locus_tag="C3E96_028965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000166328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_032489493.1"
                     /translation="MTKQQKTALNMAKFIQHQSLLLLEKLNELDLDVEADLCEKLHDDA
                     EHLFRTLSSRLDALQDGN"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            695..1096
                     /locus_tag="C3E96_RS28970"
                     /old_locus_tag="C3E96_028970"
     CDS             695..1096
                     /locus_tag="C3E96_RS28970"
                     /old_locus_tag="C3E96_028970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009310048.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="WP_032489494.1"
                     /translation="MARVSISEAARLTGKSRTTLHRLIKAGDLSTCSGERNAKMVDTSE
                     LLRVFGPFEQLKGEHHSGQVSEQRDTASVDQCEQVIRHLKQEIEHLNTLLLSKDSHIDS
                     LKQAMLLLENHQAKLTESPAPWWKFWKKS"
                     /name="helix-turn-helix domain-containing protein"
     gene            1890..2294
                     /locus_tag="C3E96_RS28985"
                     /old_locus_tag="C3E96_028985"
     CDS             1890..2294
                     /locus_tag="C3E96_RS28985"
                     /old_locus_tag="C3E96_028985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016529521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2251 domain-containing protein"
                     /protein_id="WP_008321396.1"
                     /translation="MTILVTIQAQLVVGEEQVIKSLAPEGMLAAVFEDDGRTGYFYALD
                     ESVEGNPIMDAVHIYNAEDVSDGHIPSDVKIGWSEDSQKCVLLINGYPHGAFDFVGKNG
                     YCRSGYPPPINKVWSLSGHEWSDSVDDFFR"
                     /name="DUF2251 domain-containing protein"
     gene            complement(2388..2819)
                     /locus_tag="C3E96_RS28990"
                     /old_locus_tag="C3E96_028990"
     CDS             complement(2388..2819)
                     /locus_tag="C3E96_RS28990"
                     /old_locus_tag="C3E96_028990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001025244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6530 family protein"
                     /protein_id="WP_042109831.1"
                     /translation="MKIPAHLKHKPIIQVENYDRIDGPHADDTDAMGLSVGIAQWNTPG
                     WTELSAKVWRNTGEKWSRQSEELPLHRVIDLATLICITMDYSKNGRLSSSDDFPVTRST
                     DNPELAHHTEFMKKELKQNKSNLDVSLKRLSTELKRLGY"
                     /name="DUF6530 family protein"
     gene            3237..3494
                     /locus_tag="C3E96_RS28995"
                     /old_locus_tag="C3E96_028995"
     CDS             3237..3494
                     /locus_tag="C3E96_RS28995"
                     /old_locus_tag="C3E96_028995"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_042109830.1"
                     /translation="MGSNNNQNKDLQDKQADLLDQTYTLGWMDGYAEGYDDAIEDTQNA
                     LNKLENENELLTEVVESKDNVIKELASSAGRALQAVKKNK"
                     /name="hypothetical protein"
     gene            complement(3524..4582)
                     /locus_tag="C3E96_RS29000"
                     /old_locus_tag="C3E96_029000"
     CDS             complement(3524..4582)
                     /locus_tag="C3E96_RS29000"
                     /old_locus_tag="C3E96_029000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012508929.1"
                     /GO_function="GO:0005524 - ATP binding [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ParA family protein"
                     /protein_id="WP_042109829.1"
                     /translation="MAIYAVWNNKGGVGKSYLTFQLASEYARQNPTKKVLVVDLCPQAN
                     SSSMLLGGMINGENTLNQIHSAIQRKTISGYIEDRIRSPYIPTNTGSSYVINVSTHNSK
                     VPNNLYLVTGDEQLELQASRVVGASFPGPHDAWRTVHLWINDLISDICNSWNNEDSCVF
                     IDCNPSFSIYTELALTAAERLLIPFSADGSSKRAVKAVLSLVYGERRHQNEPQSDFYLN
                     SNRYSMSLPQIYMYVGNRLTQMNNSSASAFKTVVTEIGDEIWKVWQTKPSLFCIHPNGS
                     STPNNKRSFRNMFQYEVNDANTASVVSGALGIPIATLTAGNKTVSGKIIKVNQTQLDKQ
                     VPNIVALAGMIE"
                     /name="ParA family protein"
     Typing          complement(2..377)
                     /name="ColRNAI_rep_cluster_1987"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="92.368"
                     /coverage="92.0"
                     /evalue="2.19e-150"
ORIGIN
        1 ttttgtcgtg ccttccgggt tggactcaag cgaaagttac cggaacaggc gcagcagtcg
       61 gactgaacgg ggggttcgtg catacagtcc agcttggagc gaactgccta cccggaactg
      121 agtgtcaggc gtggaatgag acaaacgcgg ccataacagc ggaatgacac cggtaaaccg
      181 aaaggcagga acaggagagc gcacgaggga gccatcaggg ggaaacgcct gatatcttta
      241 agtcctgtcg ggtttcgcca ccactgattt gagcgtccgt ttctgtgatg cttgtcaggg
      301 gggcggagcc tatggaaaaa cggccgctgt gcggccttcc cttttctaaa ttacgtgatc
      361 gctcggtttt ctcgagcttt catacgcatg ctcctgccgc tcgccgcagc cgaacggcag
      421 gagcgtagcg actgagtgag cgaggaagcg gaaaagagaa catccctagt ttgacactga
      481 gcactgacgc tctgaggcct cttatgacga aacaacagaa aacagcgctg aacatggcta
      541 aattcatcca gcatcaatct ctgctcctgc tggagaagct taacgagctt gatcttgatg
      601 tcgaggccga cctttgtgag aaactccacg atgatgcgga gcatcttttc cgtacactgt
      661 cctcgagact ggatgcatta caggatggta actgatggcc agagtgtcta ttagtgaggc
      721 agcccgactg acgggtaaga gtagaacaac actgcacagg ttaattaaag caggtgacct
      781 gtccacctgt agcggtgagc gcaatgcaaa aatggtagat acttcagagc ttttacgtgt
      841 ctttggtccc tttgaacaac tgaagggtga acaccattct ggacaggtct ctgaacagcg
      901 cgatacagcc tctgttgacc agtgtgaaca ggtgattcgt catctgaaac aggagattga
      961 acacctgaac actttacttt tgtccaaaga ttcgcacatt gacagcctga aacaggccat
     1021 gctccttctt gaaaatcacc aggcaaaatt aactgaatcc ccggcgccat ggtggaaatt
     1081 ctggaaaaaa tcctgaccct gtcatgcttc agttttcctc tccggccatc ccggggagtt
     1141 cctgaacctt cccaaaaata gtcagatctc tgaacgctcc tcaccactaa aaatacccac
     1201 accccacgca aaattaaaat tttgcagatt tgtatttaat atcagtagtt tactttcctg
     1261 agatttcgtt ttttaaattt tatttatata gatccgactc tatgacgact cgtcatagag
     1321 tccccggcga gtcgtcatag agtcggtaac gactcagggc tataaaaaca atgagttaat
     1381 aacgacccga ctctagaccc gactccccgt ttggttgttt tttagtcgcg gcgactctag
     1441 gtacgactct agtgcagagt cgccggtgaa tcgtgtggtg agtcgtccgg cgacttgcca
     1501 taacgtgatt gccggcctcg acgaacccga ttcctgaacg tgctgaaaac cggttttccg
     1561 gctgcgccgg caacgcttca cggccacgca ataaattgcg tccccgttca ccgttttcgg
     1621 atgggaagaa cgccggaaac aggacttacc ctgtctgaat ggcgtgaata ttcgcgctat
     1681 gcacttgcgt gcatactcat gcatgccata aaaacagagc ctgcgcgttt ctggcgggtt
     1741 ttcgggtggt ttgttgcctg ttttaccggt ttcccgtcag aaacgccctc agcgcgtttc
     1801 tgacgatgct gataacggat gttatggtaa attatccgct tgtctgaaag ctggctgccg
     1861 aagcaaccaa ggaaaggaga acagacctga tgaccatttt agtgacgata caggcccagc
     1921 tcgttgtcgg ggaggaacag gttataaaga gcctcgctcc tgagggcatg ctggccgccg
     1981 tgttcgaaga cgatggccgg accgggtatt tctatgcgct cgatgagtcc gtcgagggaa
     2041 acccgattat ggacgcagta cacatctaca atgccgaaga cgtttcagac ggtcacattc
     2101 cttctgatgt taaaattggc tggtcagaag acagtcagaa gtgcgtactc ctgatcaatg
     2161 gatacccgca cggggcattc gatttcgtgg gaaaaaacgg gtactgcagg agtggttatc
     2221 ctccccctat aaacaaggtg tggtctcttt ccgggcatga gtggagcgac tctgtggatg
     2281 attttttccg gtgaattacg gcaggctata gcctgccatt atggttcgaa aaacggatgt
     2341 tatggtaaat tcgtctgtga agtaggtaga catttctaaa gctagtttta atagccaagt
     2401 ctcttcaatt cagtcgagag gcgtttgagg cttacatcaa gattgctttt attttgtttt
     2461 aactcttttt tcataaactc agtgtgatgt gctagctcag ggttatcagt tgagcgagtc
     2521 acgggaaaat catcactgga tgaaagtcgc ccatttttac tgtagtccat ggtgatacag
     2581 atcagagttg caaggtcgat tacccggtga agaggcagct cttctgattg tcttgaccat
     2641 ttttctcctg tgtttcgcca aacctttgcc gaaagctcag tccatccagg agtgttccat
     2701 tgagcaatac ctacagatag ccccatagca tcagtgtcat cggcatgtgg gccgtcaatg
     2761 cggtcgtaat tttcgacttg aataattggt ttatgcttca aatgcgcggg tattttcatc
     2821 agttcgtcct taggtaatgt ttgtgattat taaattacat tgtttttcta attataaaac
     2881 tcactaaatg taagtaaata ttaatatcta ttgttatcat gtgcttgtga ttttgttttt
     2941 ccaattttat gttttttgct tggagagtag cggtgttttt ttgtgtcaag tgttatgata
     3001 agccgtacgt tttttttctg gtttatagtt cggttattca cagcaatggg cgtggttttc
     3061 tatgactaca gataacgtta ggaatattgg cgactataaa aagaaagatg tcggggtgga
     3121 tgctgactgt aatccagtct caggaaacac accaccagtc agactaagtg agaaacttag
     3181 aaatggaatt cctcctggtt tgaaaactca gatgcgccaa caaatgagga aaaaacatgg
     3241 gctctaacaa taatcagaat aaagatctgc aggataagca agctgatctt ttggaccaaa
     3301 cgtatactct tggttggatg gatggctatg ccgaagggta tgatgatgct attgaagata
     3361 ctcagaacgc tttgaataaa ctggaaaacg aaaacgagtt gcttactgag gttgttgaaa
     3421 gtaaagataa tgtaatcaaa gagttggcct ctagtgctgg cagggcgctg caagcagtaa
     3481 agaaaaacaa ataaaaaaag gcccttttaa gggccttgct attttattcg atcataccag
     3541 cgagagctac aatgttgggg acttgtttat ctagctgcgt ctgattaacc tttattattt
     3601 ttcctgaaac agttttattt cctgcagtta atgtcgcgat tggaatacct aaggctccag
     3661 atacgacaga tgctgtgttt gcatcattta cttcatactg aaacatattc ctgaaagatc
     3721 ttttattatt tggcgttgag ctcccatttg ggtgaataca aaacagactt ggttttgttt
     3781 gccatacttt ccaaatttca tcaccaattt cggttactac cgtcttaaat gcactggcag
     3841 atgaattgtt catttgcgtt aatctatttc caacatacat atatatttgt ggtagcgaca
     3901 tagaataacg attgctatta agatagaaat ctgattgtgg ttcattctga tggcgacgct
     3961 caccataaac taaagaaagt acagccttaa ctgctctctt tgatgaacca tcggcagaga
     4021 aaggaattaa aaggcgctct gctgcggtta aagctaactc tgtataaata gagaagctag
     4081 ggttgcagtc aatgaatacg cagctatctt cattattcca tgagttgcaa atgtcactga
     4141 ttaaatcatt aatccagagg tgaacagtac gccatgcatc atggggacct ggaaatgatg
     4201 ccccaacaac tcttgatgct tggagttcta attgttcatc gccagtgaca agatatagat
     4261 tatttggaac tttactattg tgtgtagata catttattac atagctagaa ccagtgttgg
     4321 taggaatata tggacttctg atcctatcct caatatatcc agatattgtc tttctctgta
     4381 ttgctgaatg aatctggttt agtgtgtttt cgccatttat cattccacca agtaacatag
     4441 aggacgagtt cgcttgtggg cacaggtcaa ccaccaggac ctttttagta gggttctgtc
     4501 tggcatattc agaggctaac tgaaaagtaa ggtaactttt ccctacacca cccttgttat
     4561 tccatacggc atagatcgcc atctataact cctaatctag ttttgttgtt agcttagatt
     4621 cagggtacta gagattattg ttctactgtt agtttctttc agctgactgc ctttttttgg
     4681 aacgatattc agtcgaaggg gttggctggc tcaccatgac ttatctggag ttgtcgaatt
     4741 ccgattaaaa ggatcttctt gagatcctaa cctgcgggat gtaatctttt gctctgtaaa
     4801 cgaaaaaacc acctggggag gtggtttttc gaaggatcag taagttgggg aacttctgaa
     4861 ccgtggtaac agggtgtaca agaccgctgc caccaaatct gtcctttcag tttagctgta
     4921 gttaggctgt aacttcaaga actctgcacc agtaattctt gtacacccct taccagtggc
     4981 tgctgccagt ggcg
//
