LOCUS       NZ_CP036198             3630 bp    DNA     linear   CON 05-JAN-2024
DEFINITION  Klebsiella pneumoniae strain BA34918 plasmid pCol440II.
ACCESSION   NZ_CP036198
VERSION     NZ_CP036198.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10956502
            Assembly: GCF_004295405.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 3630)
  AUTHORS   Veeraraghavan,B., Shankar,C., Vasudevan,K., Narasimman,V. and
            Venkatesan,M.
  TITLE     BA34918 Klebsiella pneumoniae
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3630)
  AUTHORS   Veeraraghavan,B., Shankar,C., Vasudevan,K., Narasimman,V. and
            Venkatesan,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-FEB-2019) Clinical Microbiology, Christian Medical
            College, Ida Scudder Road, Vellore, Tamil Nadu 632004, India
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 2019
            Assembly Method :: Canu v. 1.7; Unicycler hybrid v. 0.4.6
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 37.6x
            Sequencing Technology :: IonTorrent; Oxford Nanopore MiniION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 01/04/2024 23:31:46
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 6,183
            CDSs (total)                      :: 6,057
            Genes (coding)                    :: 5,729
            CDSs (with protein)               :: 5,729
            Genes (RNA)                       :: 126
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 90
            ncRNAs                            :: 11
            Pseudo Genes (total)              :: 328
            CDSs (without protein)            :: 328
            Pseudo Genes (ambiguous residues) :: 0 of 328
            Pseudo Genes (frameshifted)       :: 181 of 328
            Pseudo Genes (incomplete)         :: 155 of 328
            Pseudo Genes (internal stop)      :: 40 of 328
            Pseudo Genes (multiple problems)  :: 45 of 328
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP036198.1.
            Bacteria and source DNA available from Department of Clinical
            Microbiology, Christian Medical College, Vellore, India.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..3630
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="BA34918"
                     /isolation_source="blood"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="pCol440II"
                     /geo_loc_name="India"
                     /lat_lon="12.9246 N 79.1348 E"
                     /collection_date="2017"
                     /collected_by="Christian Medical College, Vellore, India"
     gene            357..677
                     /locus_tag="EX353_RS31455"
                     /old_locus_tag="EX353_31455"
     CDS             357..677
                     /locus_tag="EX353_RS31455"
                     /old_locus_tag="EX353_31455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000957083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="WP_173017142.1"
                     /translation="MLTMWVTEDEHRRLLERCDGKQLAAWMRQTCLDEKPARAGRLPSI
                     SPALLRQLAGMGNNLNQIARKVNAGGAGHDRVQIVAALMAIDAGLERLRHAVLEKGGND
                     DR"
                     /name="MobC family plasmid mobilization relaxosome protein"
     gene            886..>1317
                     /locus_tag="EX353_RS33575"
                     /pseudo=""
     CDS             886..>1317
                     /locus_tag="EX353_RS33575"
                     /inference="COORDINATES: protein motif:HMM:NF015397.4"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            1355..1840
                     /locus_tag="EX353_RS32770"
     CDS             1355..1840
                     /locus_tag="EX353_RS32770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001749519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeB family mobilization protein"
                     /protein_id="WP_134890815.1"
                     /translation="MSSLLALAKDLEQQSKAQQQSTGEMLKAAFSEHEKSVKAELSASA
                     KRISDAISAHEQGMTAAMQSNRLNVLRMVGRTWLTITMVSVLLIATSGSILWWQGQQIT
                     GNYQTIRAQERTQAMLSEKNHGVQLSLCGEQKLSCVKVNPKAGAYGKEGNWMVLERK"
                     /name="MbeB family mobilization protein"
     gene            1844..2056
                     /locus_tag="EX353_RS32775"
     CDS             1844..2056
                     /locus_tag="EX353_RS32775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000137423.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="WP_000137423.1"
                     /translation="MTELEKQLLTALEQLHQDYSQRLDEWESAFAEWQKMSGLMQRENA
                     ALNERVTRLSQQVANLSRQLQRLSQ"
                     /name="MbeD family mobilization/exclusion protein"
     gene            complement(2566..2982)
                     /locus_tag="EX353_RS31465"
                     /old_locus_tag="EX353_31465"
     CDS             complement(2566..2982)
                     /locus_tag="EX353_RS31465"
                     /old_locus_tag="EX353_31465"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_130628037.1"
                     /translation="MTFSITEVRERRIGSLVITKELYDKLEKYSRSNGLITSTYNHGHG
                     VVRYYTVKYCLQMNYHGQNHPQKYLIKRGGRYPSKYAMVKKTVEELEYSTPTFDAICRN
                     IAIKYPHMVKFANYISETPLKGFAATFNNSVGND"
                     /name="hypothetical protein"
     Typing          70..249
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="84.409"
                     /coverage="83.0"
                     /evalue="3.53e-41"
     Typing          complement(3245..3591)
                     /name="rep_cluster_2373"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="93.732"
                     /coverage="81.0"
                     /evalue="6.47e-146"
     Typing          668..2172
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="94.024"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 tgcttttgct cttatccgtg agcaggtaac gcccgccgca gctgaacggc aggagcgtca
       61 gcgaccgagt gagcgaggag gcgtaatatc accgcaacct tcatgttctc ccgtacgccc
      121 tgcagctgca ttttcccctg tcatatgaag cactttccta aagtgttacc acgtcgtaac
      181 atattgagcc agtatacact ccgctagcgc tacgtgactg gttcatggct gcgccccgaa
      241 acccgctaaa agccactgac gcgcctgcgg cttgtccaac accgtgccga ccgggaaaca
      301 tttcccgccc gtcccggtgt tatcaggagg ctactctggc agacaaacgc aacaagatgc
      361 tcacgatgtg ggtgacggaa gacgaacacc ggcggctgct cgagcggtgc gacggcaagc
      421 agctggcggc gtggatgcgt cagacctgcc tcgatgagaa gccggcgcgt gccggcagac
      481 tgccgtcgat atcgccggcg ctgctgcgcc agcttgccgg tatgggtaat aacctcaacc
      541 agatcgcccg gaaagtgaat gccggtggtg ccggtcatga ccgggtgcag atcgtggccg
      601 ccctgatggc aatcgacgcg ggactggagc ggctgcggca tgcggtgctg gaaaaagggg
      661 ggaatgatga tcgttaaatt ccatccccgg gggcgcggtg gtggtgccgg tccggtggat
      721 tacctgctgg gaaaagaccg gcagcgcgag ggggcgacag tgctgcaggg aaagccggag
      781 gaagtccggg agcttatcga tgcctcgccg tatgcgaaaa agtacacctc cggcgtgttg
      841 tcgttcgcgg aggctgaact gccgcccggg cagcgggagc agatcatggc cagctttgag
      901 cgggttctga tgcccgggct cgataaagac cagtacagca ttctgtgggt ggagcacacc
      961 gacaaggggc ggctggagct gaatttcctg atccccaaca ctgaactgct gaccgggaaa
     1021 cgcctgcagc cgtattacga tcgcgccgac cggccgcgca tcgatgcctg gcagaccgtg
     1081 gtgaacggca gactggggct gcatgatcca aacgccccgg agaaccggcg gttactggtc
     1141 acgccgtccg cactgccgga aacgaagctg gaagccgctc aggcgattac acggggtttg
     1201 ctggccttag cctcatccgg ggcgcttaaa acgcgcgagg acgtcacagg ggcgctcaca
     1261 gcggcaggtt ttgaggtggt ccgcaccaca aagaacagta tcagcattgc cgacccggac
     1321 ggggggcgaa acatccgact gaagggagcc atttatgagc agtcttttag cgctggcgaa
     1381 ggacttggag cagcaatcga aagcgcagca gcagagtacc ggcgagatgc tgaaagccgc
     1441 attcagcgag cacgagaagt ctgtaaaagc ggaactgagc gcaagcgcga agagaatcag
     1501 cgacgccatc agcgcccacg agcagggtat gaccgcggcg atgcagtcga accggctgaa
     1561 cgtgctgcgt atggtcggca ggacgtggct gaccatcacc atggtctcgg tactgctgat
     1621 cgccacaagc gggagcattc tgtggtggca ggggcagcag atcaccggga attaccagac
     1681 tatccgggcg caggagcgga cgcaggccat gctgtcagag aagaaccacg gcgtgcagct
     1741 gtcgctctgc ggggagcaga aactgtcctg cgtcaaagtg aacccgaaag cgggagctta
     1801 cgggaaggaa gggaactgga tggtactgga gaggaaatag cccatgacgg aactggaaaa
     1861 acagttgctg accgcattag agcaactaca tcaggactac tcgcaaaggc tggacgagtg
     1921 ggagagcgcc ttcgcggaat ggcagaagat gtctggtctt atgcaacggg agaacgcggc
     1981 gctgaacgag cgcgtcacgc gcttgagtca gcaggtggcg aacttgagca ggcagttaca
     2041 gcgtttgagc cagtagtgca gcggcatgaa atggcggtgg ccgccgaacg ggcatatgag
     2101 cagagacagc acgaaaaaga gctggcggaa acccgttccc ggcagcggag ctataacggt
     2161 ccgacgctgg gctgactgcg cgcatccagt gacaaacccc aagaagaagg gctcataaat
     2221 ttcccgctaa atacggtcgt gatgtttcca tcacagcgta tacaacggag ggattatgag
     2281 actgtttaac gtgattgaga cggtgctgaa ctgcctgtac atggtgctgg agatctggga
     2341 ctggctggag aagcattttc ctgtttttaa ggcgttcatc cggattctgg cctgaaatca
     2401 gactgtatgc atctggctgc atgactatgc accagtgtaa tattcagcgg ctgcgtttcc
     2461 ggtgtttttt cgttatgtct gtcgccactt tctcgcgtct ggcaccggaa acgcagccaa
     2521 ccccgtttca gtggtgcggg caagggatgt tatggtaaat aacacttaat cattaccaac
     2581 ggagttatta aaggttgcgg cgaagccttt taatggggtt tctgatatgt aattagcaaa
     2641 cttgaccatg tgtgggtatt ttattgctat gttcctacat attgcgtcaa atgtcggtgt
     2701 tgaatactct aactcttcaa cggttttttt gaccattgca tacttgctgg gatatctccc
     2761 ccctctttta ataagatatt tttgaggatg attttgtccg tgatagttca tctggaggca
     2821 atatttcacg gtgtagtatc taacaacgcc atgaccatgg ttgtatgtgg atgttattaa
     2881 tccatttgag cgagagtatt tttctaattt atcgtaaagc tcttttgtaa taactaaaga
     2941 accgatacgc ctctcacgca cttctgttat tgaaaaagtc atatttaagc tcactttttt
     3001 actctgaata taacctgtta gagaggattt tcttgagatc atccgtctgt cgtcgtagtc
     3061 tcttatccag aaacgaaaaa accacctggg gaggtggttt ttcgaaggtt cagtaagttg
     3121 gggaacttct gaaccgtggt aacagtcttg tgcgagacat gtcaccaaat actgtccttt
     3181 cagtgtagcc tcagttaggc cgccacttca agaactctcg ttacatctct cgcacatcct
     3241 gcttaccagt ggctgttgcc aatggcgatt agtcgtgtct atccgggttg gactcaagag
     3301 atagttaccg gacaaggcgc agcggtcgga ctgaacgggg ggttcgtgca tacagtccag
     3361 cttggagcga actgcctacc cggaactgag tgtcaggcgt ggaatgagaa aacgcggcca
     3421 taacagcgga atgacaccgg taaaccgaaa ggcaggaaca ggagagcgca cgagggagcc
     3481 accaggggga aacgcctggt atctttaagt cctgtcgggt ttcgccacca ctgatttgag
     3541 cttcagattt cgtgatgctt gtcagggggg cggagcctat ggaaaaacgg ctgcgctaca
     3601 tcctttttct gccccgcttg tcattccgta
//
