LOCUS       NZ_CP036184             2573 bp    DNA     circular CON 18-JUN-2024
DEFINITION  Escherichia coli strain WCHEC025970 plasmid p5_025970, complete
            sequence.
ACCESSION   NZ_CP036184
VERSION     NZ_CP036184.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10956393
            Assembly: GCF_004295365.1
KEYWORDS    RefSeq.
SOURCE      Escherichia coli
  ORGANISM  Escherichia coli
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Escherichia.
REFERENCE   1  (bases 1 to 2573)
  AUTHORS   Long,H., Feng,Y. and Zong,Z.
  TITLE     The complete genome of Escherichia coli strain WCHEC025970
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2573)
  AUTHORS   Long,H., Feng,Y. and Zong,Z.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-FEB-2019) Center of Infectious Diseases, West China
            Hospital, Sichuan University, Guoxuexiang 37, Chengdu, Sichuan
            610041, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.4.7
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 200.0x
            Sequencing Technology :: Illumina HiSeq; Oxford Nanopore MiniION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_004295365.1-RS_2024_06_18
            Annotation Date                   :: 06/18/2024 06:04:20
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,247
            CDSs (total)                      :: 5,127
            Genes (coding)                    :: 4,888
            CDSs (with protein)               :: 4,888
            Genes (RNA)                       :: 120
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 87
            ncRNAs                            :: 11
            Pseudo Genes (total)              :: 239
            CDSs (without protein)            :: 239
            Pseudo Genes (ambiguous residues) :: 0 of 239
            Pseudo Genes (frameshifted)       :: 79 of 239
            Pseudo Genes (incomplete)         :: 160 of 239
            Pseudo Genes (internal stop)      :: 53 of 239
            Pseudo Genes (multiple problems)  :: 48 of 239
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP036184.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2573
                     /organism="Escherichia coli"
                     /mol_type="genomic DNA"
                     /strain="WCHEC025970"
                     /host="Homo sapiens"
                     /db_xref="taxon:562"
                     /plasmid="p5_025970"
                     /geo_loc_name="China: Chengdu, Sichuan"
                     /collection_date="2017-10"
     gene            complement(join(2325..2573,1..462))
                     /locus_tag="EYD11_RS26390"
                     /old_locus_tag="EYD11_26390"
     CDS             complement(join(2325..2573,1..462))
                     /locus_tag="EYD11_RS26390"
                     /old_locus_tag="EYD11_26390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000967646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_044307768.1"
                     /translation="MLFWKKMPSLWIGNQIAEFSDLDTAKAIAALKIYLTFCLFCKESD
                     SGCRTVKLTFSEICETASMSRSLVNEGLKILYAKKLIKNVSQTERKKIYTVDVLGPHED
                     GWCKLPLKGVVGEDNKISAFQSMHNRYPFELLALQTYMYLLYARDNRNDYTLARKKTIC
                     TKLKCKLTDLNKAITYLIHIGLLDRVVKKAIVDKPLDLFHDSCYFYMKTGSERALTYRK
                     IPTSLVVAEEDLPF"
                     /name="hypothetical protein"
     Typing          1577..2073
                     /name="rep_cluster_2335"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="89.494"
                     /coverage="97.0"
                     /evalue="3.55e-179"
ORIGIN
        1 gtagtcatta cgattatcgc gagcgtaaag aagatacatg taagtttgta aggctagcaa
       61 ctcaaaaggg tatctgttgt gcatggactg aaatgcactt attttattat cttcaccgac
      121 cactcctttc agtggaagct tgcaccaccc atcctcatgc gggccgagta cgtctaccgt
      181 ataaattttt ttacgttcag tctgcgaaac atttttgatt aatttttttg catatagaat
      241 tttaagccct tcgttaacta acgaacggct catagacgca gtctcacaaa tttcgctaaa
      301 ggttagcttg actgttctac accccgaatc agactctttg caaaataagc aaaaagttaa
      361 ataaattttt aatgctgcta tagcctttgc tgtatccaga tcgctgaatt cagcgatctg
      421 gtttcctatc cataatgaag gcattttttt ccagaacagc ataggcaacc tctacgcaat
      481 atttttaaaa atgaagtaaa ccaatcccaa tacggaaagc gataagacaa gattggttaa
      541 tacagtagca accttcgcta acctctcagc cagataaacg cttttttcaa acattttcac
      601 accccttccc tcgcccttgt tgtttttatt atctcaggcc gtgaaggcgt tgtaacgcct
      661 tcacaaaaat ctatctagat agataaggaa agtgaaaaat ttcataggtg tttgtttata
      721 aaataaattt agttcattta tagtccaagt ggaaactgaa ttatggttca tggtgaacca
      781 taatctaagt gcaccggcat attttctcca tgtatagatg catccatacg atgaaaagca
      841 gccaatgcag ttgtatttac cataacatcc gttgcgtgca ccgcctgaga ggccctcagg
      901 gcgtttctgc cgcgtccggc cgatttccgg cacctttccc tgtcccaaac actgaaaaac
      961 gcccctgatg atttttgcgc agctgcatgg ctatgcacag acatgcctgg ccgccatttt
     1021 agcggctaaa atccggcgag tgccctgaaa gccatcatga accaccctga taacggtgaa
     1081 cgggtgcgca gtttactgtg cggccgtgag gcgttggcca ggccgtcagg catggcagga
     1141 tttattgcca aaggggtcgg atttaacctg gggtgatcag cgcgcagaga tgaacgggat
     1201 tcggaagggg aacccttgcg gcgcggcgat gtatacatcg ctaacgtgcc tgactctttt
     1261 cacagcagag ggtagcggta gcaaacaagt agcaaacaga tagcaaacag gtagcaaaaa
     1321 gatagcaaac atacggtgtc gggcggaacc tgaccaggag tcattggcgt gccggcggta
     1381 ctccaaaaac acatcttgtc ccgctgtttt gtgaataagc cagcatggct gtgggcacaa
     1441 aacatttcct gtccgctgct ttaaccttgt taatccagga acgtcaggtg acgtcacttt
     1501 gcggcgttag ccctatcctg catcgtatta aaaaatgcag ctatggcgtg tacggtgcca
     1561 gaaataagta cgaagatatg ccgcttcctc gctcactgac tcgctgcgct cggtcgttcg
     1621 gctgcggcga gcggagggaa caggcacatc aaaagatgaa gccatgaggg acgatgagag
     1681 ggaaaaaaac gccgcggcgt tgccggtttt ccataggctc cgcccccctg acaagcatca
     1741 cagaatctga cgctcaaatc agtggtggcg aaacccgaca ggactataaa gatcccaggc
     1801 gtttccccct ggtagctccc tcgtgcgctc tcctgttcct gcctttcggt ttaccggtgt
     1861 cattccgctg ttatggccgc ggtttctcat tccacgcctg acactcagtt ccgtgaaggc
     1921 agttcgctcc aagctggact gtatgcacga accccccgtt cagtccgact gctgcgcctg
     1981 ttccggtaac tttcgacttg agtccaaccc ggaaaagcac gacaaaacgc cactggcagc
     2041 agccaacggt aaaagggtgt acaagagatt actaatgcag agttcttgaa gtatcagcct
     2101 aactacggct aaactggaag gacgtatttg gtggcagcgg tcttgtacac cctgttacca
     2161 cggttcataa acttgccggt ttaatgaacc ttcgaaaaac caccttgccg ggtggttttt
     2221 tcgtatctgg gtcaagagac tacgacgaca aacgatgaat ctcaagagaa tatggtcact
     2281 cccctgacaa aaatatcatc aatcgccacc tcggcaccgt gcaatcaaaa cggaagatct
     2341 tcttcagcaa caactagtga ggtaggtatc ttccggtagg ttaaagctct ctcactacct
     2401 gttttcatat agaaataaca ggagtcatga aataaatcta atggcttatc tacgatagct
     2461 ttttttacaa ctctatcaag taaaccaata tgaatcagat atgtaatggc tttatttagg
     2521 tcagttaatt tgcacttcag ctttgtacaa attgtttttt ttctagccaa tgt
//
