LOCUS       NZ_CP035539             3359 bp    DNA     circular CON 26-NOV-2023
DEFINITION  Klebsiella pneumoniae subsp. pneumoniae strain CCRI-22199 plasmid
            pKp199-4, complete sequence.
ACCESSION   NZ_CP035539
VERSION     NZ_CP035539.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN09692822
            Assembly: GCF_004141975.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae subsp. pneumoniae
  ORGANISM  Klebsiella pneumoniae subsp. pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 3359)
  AUTHORS   Deraspe,M., Longtin,J. and Roy,P.H.
  TITLE     Genome sequence of a Klebsiella pneumoniae NDM-1 producer isolated
            in Quebec City
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3359)
  AUTHORS   Deraspe,M., Longtin,J. and Roy,P.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-JAN-2019) Infectious Diseases Research Center,
            Universite Laval, 2705 boul. Laurier, Quebec City, Quebec G1V 4G2,
            Canada
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 16-SEP-2015
            Assembly Method                   :: Celera Assembler v. SEPT-2016
            Assembly Name                     :: Ulaval_Kp711_1.0
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 140.0x
            Sequencing Technology             :: PacBio RSII
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 11/26/2023 03:01:14
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,599
            CDSs (total)                      :: 5,475
            Genes (coding)                    :: 5,348
            CDSs (with protein)               :: 5,348
            Genes (RNA)                       :: 124
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 87
            ncRNAs                            :: 12
            Pseudo Genes (total)              :: 127
            CDSs (without protein)            :: 127
            Pseudo Genes (ambiguous residues) :: 0 of 127
            Pseudo Genes (frameshifted)       :: 53 of 127
            Pseudo Genes (incomplete)         :: 73 of 127
            Pseudo Genes (internal stop)      :: 15 of 127
            Pseudo Genes (multiple problems)  :: 14 of 127
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP035539.1.
            Bacteria and source DNA available from Infectious Diseases Res.
            Ctr.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3359
                     /organism="Klebsiella pneumoniae subsp. pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="CCRI-22199"
                     /isolation_source="anal sample"
                     /host="Homo sapiens"
                     /sub_species="pneumoniae"
                     /db_xref="taxon:72407"
                     /plasmid="pKp199-4"
                     /geo_loc_name="Canada:Quebec City"
                     /lat_lon="46.8371 N 71.2265 W"
                     /collection_date="2012-09-10"
                     /collected_by="Jean Longtin"
     gene            complement(155..541)
                     /locus_tag="Kp711_RS02100"
                     /old_locus_tag="Kp711_9001"
     CDS             complement(155..541)
                     /locus_tag="Kp711_RS02100"
                     /old_locus_tag="Kp711_9001"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_045282373.1"
                     /translation="MRISNVEWLKKRIAFIRKLGEKTARQRQIIDLLDDEASLSETERR
                     LLHVLATAEKNALQERDAAQKKAVQARISGQKNRRERNHRLFLAAGLMIDAGLVDTKTG
                     ELNFDHEKLLTALKRVRYDLETSA"
                     /name="hypothetical protein"
     gene            708..1643
                     /locus_tag="Kp711_RS02105"
                     /old_locus_tag="Kp711_9002"
     CDS             708..1643
                     /locus_tag="Kp711_RS02105"
                     /old_locus_tag="Kp711_9002"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016235474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobA/MobL family protein"
                     /protein_id="WP_045626452.1"
                     /translation="MATYHLSVKFGGKGKALAHASYITREDKFSQRQDLEHTEHGNMPE
                     WARDEPAHFWQAADAFERANGSTYREIEIALPRELNEAQRLALVRDFVKQETGDKHAWT
                     FAIHNPKASIDGGEQPHAHIMMSQRVNDGIERSPEQYFRRYNAKFPARGGARKDSGHNL
                     TPTEQKQALKALRERWERTHNAHMKRYGFEQGFIDSRSLKTQGIDRKPEQHLGFEAAGR
                     LDDSQRQDIKDSRTFSVVDVPEQAKHIDHSDRSWMNASGIEVNRKELVRSLTHDISQQY
                     GREMAARVTKQGNVEIERVKSLSRGFSISR"
                     /name="MobA/MobL family protein"
     gene            1646..2176
                     /locus_tag="Kp711_RS02110"
                     /old_locus_tag="Kp711_9003"
     CDS             1646..2176
                     /locus_tag="Kp711_RS02110"
                     /old_locus_tag="Kp711_9003"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000168766.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_012634455.1"
                     /translation="MASTEEKLLTLLLSAEHLKEAAKEQQKAVADSLAVARETLKGYRE
                     ISDSVAQQVRDEVRQEVQKMDVAGLIGERISADFQRLEKSVGNMKINADALDKEISIIR
                     SNIIAEYNTLRGYSWKWFAGVAVAFVVLIFATSWFVKTELQDNYNASAAVYQKVADLEK
                     LLTTEQKPEKKKN"
                     /name="hypothetical protein"
     gene            complement(2443..2700)
                     /locus_tag="Kp711_RS02115"
                     /old_locus_tag="Kp711_9004"
     CDS             complement(2443..2700)
                     /locus_tag="Kp711_RS02115"
                     /old_locus_tag="Kp711_9004"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_097734894.1"
                     /translation="MEQAAFLFSGVGGMLLTEMEISNIRNITLIARRLAWINAKRTHID
                     IPSFAELLFSGQKALFFEQYNYFHSRRYTTAGTSKPPDLP"
                     /name="hypothetical protein"
     Typing          709..1640
                     /name="MOBQ"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="95.177"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 ccccgtgatt ctgtcacggg gcttttgtac atctggagca agaaaattca tgctcctatc
       61 cgaaaatccc taccgctcgc cgcagccgaa cgaccgagcg acgcgagtca gtgagcgagg
      121 aagcggcatt tctccggcct tgcagaatgc acgttcacgc cgatgtttcc agatcgtagc
      181 gtacccgttt cagcgcagtc agtaattttt cgtggtcaaa attcaactca cccgtttttg
      241 tatcaaccag tcccgcgtca atcatcagac cagccgccag aaacagtctg tgattgcgtt
      301 ccctgcggtt tttctgccct gaaatccgcg cctgaaccgc ctttttctgt gcggcatccc
      361 gttcctgcaa cgcgtttttt tcagcggttg ccagaacgtg gagcagtcgt ctttcagtct
      421 cactgagcga agcttcatca tccagcagat cgataatctg ccgttgccgt gccgtttttt
      481 ctcccagctt tctgatgaag gctatgcgct ttttaagcca ttcgacgtta ctgatccgca
      541 tcgtttaact tccccatccc gatatttccg acggggaaag tatataactt gcggtcagaa
      601 gtcgcatgac ttatctttac tcataattct ttaaattaga gtaaagcgca cttatatgtt
      661 tctccctgcg ggcagaaaca gtgcgccctg ccgggggctg acacaacatg gcaacgtatc
      721 atctcagcgt gaaatttggc ggcaagggta aagcccttgc tcatgccagt tacattacgc
      781 gggaagataa gttcagccag cgccaggatc tcgagcacac cgaacacggc aatatgccgg
      841 aatgggcgag agatgaaccc gcccatttct ggcaggctgc ggatgcgttc gaacgtgcca
      901 acggttcaac gtacagggaa attgagatcg ctctaccccg cgagctgaat gaagcgcagc
      961 ggctggcgct tgtccgggat tttgtgaagc aggaaacggg cgacaaacat gcatggacgt
     1021 ttgcgatcca caatccgaaa gccagcattg acggcggcga acagccgcac gcccatatca
     1081 tgatgagcca gcgcgtcaat gacggtattg agcgcagtcc cgaacagtat ttcaggcgct
     1141 ataacgccaa atttccggcg cgtggcggcg cgcgcaagga ctcagggcat aatttaaccc
     1201 ctacagaaca aaaacaggca ctgaaagccc tgcgggagcg ctgggagcgt acgcacaacg
     1261 cgcatatgaa acgatatggc tttgagcagg gttttattga tagccggtca ctgaaaacac
     1321 agggtatcga ccggaaaccg gaacagcatc tcggttttga agcagccgga cgactggacg
     1381 acagccagag gcaggatatt aaagacagcc ggacgttttc agtcgtggat gtgcctgaac
     1441 aggcgaaaca tatcgaccac agcgaccgta gctggatgaa tgccagcggt atcgaggtaa
     1501 accggaagga actggtcaga tctctgacgc atgatatctc gcagcagtac gggcgggaga
     1561 tggctgcacg ggtcacaaaa cagggaaatg ttgaaataga gcgcgtgaaa tccctgtcac
     1621 gcggattttc cataagcagg taactatggc gagcaccgaa gaaaaacttc tcacactcct
     1681 gctgtcggcg gagcatctga aagaggccgc aaaagagcag cagaaagccg tggcggattc
     1741 gctggcggtg gcaagggaaa ccctgaaagg ctaccgggaa atatcggaca gtgtggcaca
     1801 gcaggtaagg gatgaagtcc ggcaggaagt gcagaaaatg gatgttgcgg ggctgattgg
     1861 cgagcgtatc agcgctgatt ttcagcgtct ggaaaaatcc gtcgggaaca tgaaaatcaa
     1921 tgcggacgcg ctggacaagg aaatttccat tatccgcagt aacatcatcg cggagtacaa
     1981 cacgctgcgg ggttacagct ggaagtggtt tgctggggtt gcggttgcct ttgtcgtact
     2041 gatatttgcc acaagctggt ttgtgaaaac ggaactacag gacaattaca acgcgtctgc
     2101 tgccgtctat cagaaagtgg cagaccttga aaagctgctg acaacggaac agaaaccgga
     2161 aaagaaaaag aactgacgcg ctgcgcttgt ccaacgcctc acgttcgcac aataaattgc
     2221 gcacccgttc accgttttca gccgagtttg gggcgtcttt tgagacttcc ggcctgaatt
     2281 caggccggaa gttctcgcca gtcagtcagg tgcatggtta tgcatggggc tgaaaatcac
     2341 ggtatgcgat tctgagcggt tttcggtgag aagccggggg tttttatggc tcaggactta
     2401 aaaccgccct gagagcctct gaggcggtgc acgcaacgga tgttatggta aatccggtgg
     2461 ctttgacgtg cctgccgttg tgtaccgtcg tgagtgaaaa taattatatt gttcgaagaa
     2521 cagcgctttt tggccggaga aaagcagttc tgcaaacgat ggtatatcga tatgagttct
     2581 tttggcatta atccaggcaa gacgccgggc aataagcgta atattccgga tgttacttat
     2641 ttccatttct gtcaacagca tcccccccac gccggagaat aaaaaagccg cctgttccat
     2701 cggcaagccc tacatcaagg gaaactacgt cttacgattc gttttgaacc gggacgcttt
     2761 gttgctgcga atcactaacc agataatcca cgttttgtga gtgggtttag gttaaggctt
     2821 caatagaaca ataatagcgt taagtgatta gggcaacctg tgattgctaa aatgatgaag
     2881 tcttcacatc atttcggtga aggcgatatg tgttacacca caacccggat ttgagagtcg
     2941 caaacccata ttagggcaaa gaaagcctaa tgcccccgtg gtgggtacac cagaaaacgg
     3001 ggagcgaagc gaccagcatc aggccgttcg tatgctgctt cgattttgtg ggtgttgcgc
     3061 cagaccttgg caatcacgct tcaccgcaac cgctgccttc actctcactt tatcaggtac
     3121 gttattggtt aacgtgagac cgggtagagc cagcttcttt cccgagctgg tcaggttccc
     3181 accgcttgcc tgtttatcct gccggagtcc ggggcgtaga cctgagagtc aaggtgcaga
     3241 tatgggttta atgtcgttga atggtattaa gctggtagtg acattcctag ccagccctgc
     3301 taggatttga ttgtgacgtc tgatcctggc aggtatctgc aagaattaga gtactcaag
//
