LOCUS       NZ_CP035388             2699 bp    DNA     circular CON 03-APR-2024
DEFINITION  Enterobacter hormaechei strain S11_16 plasmid unnamed3, complete
            sequence.
ACCESSION   NZ_CP035388
VERSION     NZ_CP035388.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10755318
            Assembly: GCF_004118875.1
KEYWORDS    RefSeq.
SOURCE      Enterobacter hormaechei
  ORGANISM  Enterobacter hormaechei
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Enterobacter; Enterobacter cloacae complex.
REFERENCE   1  (bases 1 to 2699)
  AUTHORS   Dunn,S.J.
  TITLE     Complete clinical Enterobacter hormaechei isolate S11_16
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2699)
  AUTHORS   Dunn,S.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-JAN-2019) College of Medical and Dental Sciences,
            University of Birmingham, Edgbaston, Birmingham B15 2TT, United
            Kingdom
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.4.7
            Assembly Name                     :: S11_16_Ecloa
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 100.0x
            Sequencing Technology             :: Illumina; Oxford Nanopore
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_004118875.1-RS_2024_04_03
            Annotation Date                   :: 04/03/2024 03:44:28
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,911
            CDSs (total)                      :: 4,796
            Genes (coding)                    :: 4,717
            CDSs (with protein)               :: 4,717
            Genes (RNA)                       :: 115
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 84
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 25 of 79
            Pseudo Genes (incomplete)         :: 56 of 79
            Pseudo Genes (internal stop)      :: 12 of 79
            Pseudo Genes (multiple problems)  :: 13 of 79
            Pseudo Genes (short protein)      :: 1 of 79
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP035388.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2699
                     /organism="Enterobacter hormaechei"
                     /mol_type="genomic DNA"
                     /strain="S11_16"
                     /host="Homo sapiens"
                     /db_xref="taxon:158836"
                     /plasmid="unnamed3"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.451397 N 1.941253 W"
                     /collection_date="2016"
                     /collected_by="S. Dunn"
     gene            join(2260..2699,1..205)
                     /locus_tag="EQ802_RS24765"
                     /old_locus_tag="EQ802_24770"
     CDS             join(2260..2699,1..205)
                     /locus_tag="EQ802_RS24765"
                     /old_locus_tag="EQ802_24770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017900990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinolone resistance pentapeptide repeat protein
                     QnrB19"
                     /protein_id="WP_012954666.1"
                     /translation="MTLALVGEKIDRNRFTGEKVENSTFFNCDFSGADLSGTEFIGCQF
                     YDRESQKGCNFSRAMLKDAIFKSCDLSMADFRNVSALGIEIRHCRAQGADFRGASFMNM
                     ITTRTWFCSAYITNTNLSYANFSKVVLEKCELWENRWMGTQVLGATFSGSDLSGGEFST
                     FDWRAANFTHCDLTNSELGDLDIRGVDLQGVKLDSYQASLLMERLGIAVIG"
                     /name="quinolone resistance pentapeptide repeat protein
                     QnrB19"
     gene            complement(707..943)
                     /locus_tag="EQ802_RS24775"
                     /old_locus_tag="EQ802_24780"
     CDS             complement(707..943)
                     /locus_tag="EQ802_RS24775"
                     /old_locus_tag="EQ802_24780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001676031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_012772745.1"
                     /translation="MARLTNLTPAEKKFLDDAVAAAERASGKKLNQPNRHIVLNRARAQ
                     IELQRYADRQRALREDERQQSDFAWSRPRAPRR"
                     /name="hypothetical protein"
     gene            <2011..2166
                     /locus_tag="EQ802_RS24800"
                     /old_locus_tag="EQ802_24805"
                     /pseudo=""
     CDS             <2011..2166
                     /locus_tag="EQ802_RS24800"
                     /old_locus_tag="EQ802_24805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707212.3"
                     /GO_function="GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA]"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /name="helix-turn-helix domain-containing protein"
     ARG             2225..2697
                     /name="QnrB10"
                     /gene="QnrB10"
                     /gene_name="quinolone resistance protein (qnr)"
                     /tool="rgi"
                     /drug_class="fluoroquinolone antibiotic"
                     /identity="99.37"
                     /coverage="69.91"
     ARG             3..205
                     /name="QnrB19"
                     /gene="QnrB19"
                     /gene_name="quinolone resistance protein (qnr)"
                     /tool="rgi"
                     /drug_class="fluoroquinolone antibiotic"
                     /identity="100.0"
                     /coverage="31.31"
     Typing          complement(1109..1282)
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="2.5600000000000002e-86"
     Typing          1261..1752
                     /name="rep_cluster_2335"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="92.51"
                     /coverage="81.0"
                     /evalue="0.0"
ORIGIN
        1 gggtgcgacg ttcagtggtt cagatctctc cggcggcgag ttttcgactt tcgactggcg
       61 agcagcaaac ttcacacatt gcgatctgac caattcggag ttaggtgact tagatattcg
      121 gggtgttgat ttacaaggcg ttaagttaga cagctaccag gcatcgttgc tcatggagcg
      181 gcttggcatc gctgtgattg gttagttcag cgtttacacc gggagatgcg tttgacgatt
      241 tacttttaac cagtacgact cctggcaagc attgtgaaac gttttctcca gtggacgaat
      301 atcctgacct accgcatcaa cgacatgcca tctaatgctg cattctggac aggaatttga
      361 tgaatatcta accaattcat tttcgcgaga acaacgaata accactcccg aatcatgaag
      421 ccatgtctta acgaaaatat ggctaactca tagcaaaaaa aaagccccct aagggctttt
      481 ttttgtacct gacggtcaga ccgattaaac ataacatccc ttgcccgcac ccccgcaggc
      541 gccctcagcg caatcctgct gcatcagggc cgtttccagc acctttcctc accagtatcc
      601 cggaaaaacg cccctgatga tttctgcgcg actgcatggc tatgcacgca ggtgaatggc
      661 aggtgatttc gcagcgtcag caccactaaa ccgccaaaag ccaaaatcag cggcgcggcg
      721 cgcgcggacg tgaccaggca aaatcggact gctgccgctc atcctcacgt aatgcacgct
      781 ggcggtcggc gtaacgctgc aactcaattt gcgcacgcgc tctgttcagg acgatgtgcc
      841 ggttaggctg atttagcttt ttacctgacg ctctttcagc tgcggcaaca gcatcatcaa
      901 gaaatttttt ctctgcaggc gtcaagtttg tcagtctggc cataacgttc tccagtcaga
      961 ataaatcagc acagtctgcc agacacagta gaaacgatga agcgccagcg acggtgaaag
     1021 gcagtcagaa acggtgaacg ggagcggatt ttaatccggt gccgtgaggc gttggacaag
     1081 ccgcaggcgc gtcattagct tttagccggt ttcggggcgc agccctgaac cagtcacgta
     1141 gcgctagcgg agtgtatact ggctgactat gttggcacgg atgtggaaat cagtgaagtg
     1201 cttcatgtag caggagaaaa aaggcggcac cagcgcgtca gcaggatatg tagtacagga
     1261 tatattccgc ttcctcgctc actgactcgc tgcgctcggt cgttcggctg cggcgagcgg
     1321 tgccggctta caggcggggc ggaaatttcc tgggagatac caggaaggag cttaacaggg
     1381 aagagataag gccgcggcga agccgttttt ccataggctc cgcccccctg acaaacatca
     1441 tgaaatctga cgctcaaatc agtggtggcg aaacccgatg cggcttaaag ataccaggcg
     1501 tttccccctg gtggctccct cgtgctcccc cgcattcctg cctttcggtt taccggtgtc
     1561 attccgctgt tatggccgcg tttatctcat tccacgcctg acactcagtt ccgcgaaggc
     1621 agttcgctcc tggatggact gtatgcacga accccccgtt cagtccgact gctgcgcctt
     1681 atccggtaac tatcatcttg agtccaaccc ggaaagacac gacttatcgc cactggcagc
     1741 agccactggt aactgattta gaggagttag tcttgaagtt atgcgcctgt taaggctaaa
     1801 ctgaaagaac agatttggtt actgcgctcc tcgtaagcca gttaccacgg ttcaaagagt
     1861 tgctgctctg agaaccttcg aaaaaccgcc ttgcagggcg gttttttcgt ttacagagca
     1921 agagattacg acgccacaga aaggatctca agaagatcct tcaccgtaat ggaaatctat
     1981 ccaatccgag cacataggat acacatcgtt ataacgctgg atctgcgtga attccagcag
     2041 cagcaagaga aagactttct acaaaccagc ttacagcagg ctaaatttaa ccagaaaaaa
     2101 gccgctgaat tactgggtct gacttatcat cagctacgtg ccttgctgaa gaaacaccag
     2161 atctaatacg catttgcagg tgtcatactg gcgggtttga cgcataacgt cataaggttt
     2221 accatggcgt cattactgta taaaaacaca ggcatagata tgactctggc attagttggc
     2281 gaaaaaattg acagaaatcg cttcaccggt gagaaagttg aaaatagtac attttttaac
     2341 tgcgattttt caggtgccga cctgagcggc actgaattta tcggctgcca gttctatgat
     2401 cgcgaaagtc agaaagggtg caattttagt cgcgcaatgc tgaaagatgc cattttcaaa
     2461 agctgtgatt tatcaatggc agatttccgc aacgtcagtg ccttgggcat tgaaattcgc
     2521 cactgccgcg cacaaggcgc agatttccgc ggtgcaagct ttatgaatat gatcaccacg
     2581 cgcacctggt tttgcagcgc atatatcact aatactaatc taagctacgc caatttttcg
     2641 aaagtcgtgt tggaaaagtg tgagctgtgg gaaaaccgct ggatggggac tcaggtact
//
