LOCUS       NZ_CP034962             2058 bp    DNA     circular CON 19-JUN-2024
DEFINITION  Escherichia coli strain WCHEC020032 plasmid p4_020032, complete
            sequence.
ACCESSION   NZ_CP034962
VERSION     NZ_CP034962.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN06909180
            Assembly: GCF_002164865.2
KEYWORDS    RefSeq.
SOURCE      Escherichia coli
  ORGANISM  Escherichia coli
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Escherichia.
REFERENCE   1  (bases 1 to 2058)
  AUTHORS   Liu,L., Long,H., Feng,Y. and Zong,Z.
  TITLE     The complete genome of Escherichia coli strain WCHEC020032
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2058)
  AUTHORS   Liu,L., Long,H., Feng,Y. and Zong,Z.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-JAN-2019) Center of Infectious Diseases, West China
            Hospital, Sichuan University, Guoxuexiang 37, Chengdu, Sichuan
            610041, China
REFERENCE   3  (bases 1 to 2058)
  AUTHORS   Liu,L., Feng,Y. and Zong,Z.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-MAY-2017) Center of Infectious Diseases, West China
            Hospital, Sichuan University, Guoxuexiang 37, Chengdu, Sichuan
            610041, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.4.7
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 200.0x
            Sequencing Technology :: Illumina HiSeq; Oxford Nanopore MiniION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002164865.2-RS_2024_06_19
            Annotation Date                   :: 06/19/2024 15:52:29
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,892
            CDSs (total)                      :: 4,769
            Genes (coding)                    :: 4,533
            CDSs (with protein)               :: 4,533
            Genes (RNA)                       :: 123
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 91
            ncRNAs                            :: 10
            Pseudo Genes (total)              :: 236
            CDSs (without protein)            :: 236
            Pseudo Genes (ambiguous residues) :: 0 of 236
            Pseudo Genes (frameshifted)       :: 68 of 236
            Pseudo Genes (incomplete)         :: 157 of 236
            Pseudo Genes (internal stop)      :: 42 of 236
            Pseudo Genes (multiple problems)  :: 28 of 236
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP034962.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2058
                     /organism="Escherichia coli"
                     /mol_type="genomic DNA"
                     /strain="WCHEC020032"
                     /host="Homo sapiens"
                     /db_xref="taxon:562"
                     /plasmid="p4_020032"
                     /geo_loc_name="China: Sichuan"
                     /collection_date="2016-08"
     gene            complement(join(1402..2058,1..333))
                     /locus_tag="C7V17_RS00575"
                     /old_locus_tag="C7V17_00575"
     CDS             complement(join(1402..2058,1..333))
                     /locus_tag="C7V17_RS00575"
                     /old_locus_tag="C7V17_00575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001529700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_040207214.1"
                     /translation="MQNPELQNLTDYSPSDAPWDAHRSVSDDVGGIYLLAAEYERYGAR
                     MASCGGLLRFGWSTLKETGETRLRLREAHFCRVRHCPVCQWRRSLMWQARFYQSLPRIV
                     ADYPDSRWMFLTLTVRNCAIEELGETLSRMNTAFQRLKDRKEFRPVQGWIRTTEVTRGS
                     DGSAHPHFHTLMMVPPGMLNGKSYVRHERWVELWRECLRVSYDPNVDVRAVKPRKPKDG
                     ESLACATAELVRGAVAETLKYSTKPADMVADPKWFLELTRQTHKRRFVATGGALKDVLK
                     LDQETDADMVIGDDISEGDDDGSRIAFEWKTEVKKYRRSPTKDKTESD"
                     /name="protein rep"
     gene            complement(657..848)
                     /locus_tag="C7V17_RS00580"
                     /old_locus_tag="C7V17_00580"
     CDS             complement(657..848)
                     /locus_tag="C7V17_RS00580"
                     /old_locus_tag="C7V17_00580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020324555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_020324555.1"
                     /translation="MIVRLDNRLFEILDEMGAHVDREMFMAAYAQRKAEKENDPRHIRQ
                     RKLTRLAHDLMSESDPEL"
                     /name="hypothetical protein"
     Typing          1485..1676
                     /name="ColpVC"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="98.446"
                     /coverage="100.0"
                     /evalue="2.86e-91"
ORIGIN
        1 gcgggaatcg gggtaatccg ccacgatacg cggcagggac tggtagaaac gggcttgcca
       61 catcagggag cgcctccact ggcagacagg acagtgccgg acacggcaga aatgcgcctc
      121 acgcagcctc aggcgcgttt ctccggtttc tttgagggta gaccacccaa acctcagtaa
      181 accgccacag gaggccatac gcgccccgta gcgctcatat tcagccgcaa gcaggtaaat
      241 ccctcccacg tcgtcagaaa cgcttctgtg agcgtcccac ggcgcatctg agggggagta
      301 gtcagttagg ttctggagtt caggattttg catgcacacc gccccatgct gggcgatggc
      361 tcatttgacg tgttatcatt gccatatcac ctgtgttgtc gtgtccaaat tcgaattcct
      421 acaggtggtc acacccccga actgttagcg cagttgcggg ggtcgctttt ttctgcgacc
      481 actcccgaca gaatacttcc aaaaccattt tcaggcaaat cacactcaaa cccttgcggc
      541 acaagggctg gcggcgtttt ttgacgccag agttatccct taagtataaa tacaaggatc
      601 gcgcgcacga gactccggcc attttctgac cgatttccct cgcgcgcacg cgaggctcac
      661 aattcagggt ccgattctga catcaaatca tgagccaacc tggtcagttt ccgttgacgg
      721 atatgccggg gatcattttc tttttcggcc ttccgctgcg cataggccgc catgaacatt
      781 tcccgatcca catgcgcacc catctcatcg agaatctcaa acagccggtt atccagtctg
      841 acgatcatgc ctaccccctc aaaaaacgct tatcaggtgg ttgcgctcac tgcgtgatca
      901 caaccacccc ctgtaagtat tttacgggtg ctgtcgtcaa tcactaaatc ggaacccact
      961 ggcaagccag cgggaccccg cgatttagcg tttgacgatt tcgggaacgg cgaacgctga
     1021 cagattttaa tctggcggcg tgaggtgttg gcagggtgtc ggggcgcagc cctgacggat
     1081 cgtttttggt accggcatcg tgatggcggt actccaaaaa cacatcttgt ccgttatcag
     1141 tttttgtttt tcgtgggctt gccccaccgc gcgtttctca tcgccagatg agaaactact
     1201 aagcgcgcct tccggaaaat taccggaaga aaaacccagg ttcggaatcc gaactcagta
     1261 atcgagtgac gtcactttgc ggcgttagcc ctatcctgca tcggagtaaa atcaatcgga
     1321 caagatgtga ctttggtaca ccgccaccaa ggtgacggat gcccaaagcc ctcatggtca
     1381 gggcgcagcc ccgacaccct gttagtctga ttcggtttta tctttcgtcg gcgaacgccg
     1441 gtactttttg acctcggtct tccactcgaa cgcgatgcgg gaaccgtcat catcgccctc
     1501 ggaaatatca tccccgatca ccatgtcggc gtcggtttcc tgatcgagtt tcagcacgtc
     1561 tttgagtgcg ccgccggtcg ccacaaagcg gcgcttgtgc gtctggcggg tcagttcgag
     1621 gaaccattta ggatcggcca ccatgtcggc cggcttcgtg gaatatttca gggtttcggc
     1681 cactgcgccg cgcaccagtt cggcggtcgc gcaggccagc gattcgccgt ccttcggctt
     1741 gcggggtttc actgcccgga catcgacatt cggatcgtaa ctgacccgca ggcactcacg
     1801 ccacagctca acccagcgtt catgcctgac gtaactcttc ccgttaagca tgcccggcgg
     1861 aaccatcatc agggtgtgga agtgcgggtg tgcgctgccg tcactgccgc gggtgacttc
     1921 cgtggtgcgt atccagccct gaactggtcg gaactcttta cggtccttca gtcgctggaa
     1981 agccgtgttc atccggctca gcgtctcgcc cagctcctcg atcgcgcagt tgcgcacggt
     2041 cagggtcaga aacatcca
//
