LOCUS       NZ_CP034961             2101 bp    DNA     circular CON 19-JUN-2024
DEFINITION  Escherichia coli strain WCHEC020032 plasmid p3_020032, complete
            sequence.
ACCESSION   NZ_CP034961
VERSION     NZ_CP034961.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN06909180
            Assembly: GCF_002164865.2
KEYWORDS    RefSeq.
SOURCE      Escherichia coli
  ORGANISM  Escherichia coli
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Escherichia.
REFERENCE   1  (bases 1 to 2101)
  AUTHORS   Liu,L., Long,H., Feng,Y. and Zong,Z.
  TITLE     The complete genome of Escherichia coli strain WCHEC020032
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2101)
  AUTHORS   Liu,L., Long,H., Feng,Y. and Zong,Z.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-JAN-2019) Center of Infectious Diseases, West China
            Hospital, Sichuan University, Guoxuexiang 37, Chengdu, Sichuan
            610041, China
REFERENCE   3  (bases 1 to 2101)
  AUTHORS   Liu,L., Feng,Y. and Zong,Z.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-MAY-2017) Center of Infectious Diseases, West China
            Hospital, Sichuan University, Guoxuexiang 37, Chengdu, Sichuan
            610041, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.4.7
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 200.0x
            Sequencing Technology :: Illumina HiSeq; Oxford Nanopore MiniION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002164865.2-RS_2024_06_19
            Annotation Date                   :: 06/19/2024 15:52:29
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,892
            CDSs (total)                      :: 4,769
            Genes (coding)                    :: 4,533
            CDSs (with protein)               :: 4,533
            Genes (RNA)                       :: 123
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 91
            ncRNAs                            :: 10
            Pseudo Genes (total)              :: 236
            CDSs (without protein)            :: 236
            Pseudo Genes (ambiguous residues) :: 0 of 236
            Pseudo Genes (frameshifted)       :: 68 of 236
            Pseudo Genes (incomplete)         :: 157 of 236
            Pseudo Genes (internal stop)      :: 42 of 236
            Pseudo Genes (multiple problems)  :: 28 of 236
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP034961.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2101
                     /organism="Escherichia coli"
                     /mol_type="genomic DNA"
                     /strain="WCHEC020032"
                     /host="Homo sapiens"
                     /db_xref="taxon:562"
                     /plasmid="p3_020032"
                     /geo_loc_name="China: Sichuan"
                     /collection_date="2016-08"
     gene            complement(718..984)
                     /locus_tag="C7V17_RS00565"
                     /old_locus_tag="C7V17_00565"
     CDS             complement(718..984)
                     /locus_tag="C7V17_RS00565"
                     /old_locus_tag="C7V17_00565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001024536.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_001024536.1"
                     /translation="MNINIEYLNGNKTIGLFFLRSEAVIPDRFKNLILLIDGLSFGTFG
                     FHPHEGFEDELILYIQKTNERVKTLFVKIDLNGIKFGFLRTHS"
                     /name="hypothetical protein"
     gene            complement(988..1953)
                     /locus_tag="C7V17_RS00570"
                     /old_locus_tag="C7V17_00570"
     CDS             complement(988..1953)
                     /locus_tag="C7V17_RS00570"
                     /old_locus_tag="C7V17_00570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012421200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_001287824.1"
                     /translation="MSEDKFLSDYSPRDAVWDTQRTLTDSVGGIYQTAAEFERYALRMA
                     SCSGLLRFGWSTIMETGETRLRLRSAQFCRVRHCPVCQWRRTLMWQARFYQALPKIVVD
                     YPSSRWLFLTLTVRNCEIGELGTVLTAMNAAFKRMEKRKELSPVQGWIRATEVTRGKDG
                     SAHPHFHCLLMVQPSWFKGKNYVKHERWVELWRDCLRVNYEPNIDIRAVKTKTGEVVAN
                     VAEQLQSAVAETLKYSVKPEDMANDPEWFLELTRQLHKRRFISTGGALKNVLQLDRETN
                     EDLVIADDVGDGTDDGKRTAFVWDSGKRRYKRAPEKDKSD"
                     /name="protein rep"
     Typing          complement(1329..1560)
                     /name="Col(BS512)"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="2.05e-118"
ORIGIN
        1 gattaaaaac gcctcaattc tgctccattt tctttgacct gtcaaaaccc actcaaagcc
       61 tcgtcattac tgggctaaac cactatttca tatccgccat ttatccctta agtataaata
      121 caaggatcac gcgcgagaat tgcgcaaaaa ataaccacaa ttttaacccc ccaaaacaag
      181 cacccccgaa cggcttaccc caaccttttc cacacacccg atcaccaaaa cagggaataa
      241 aaacaaaacc ctgtcttaca ggtggatggc ctcacttcgt gaaaccatcc accccgcata
      301 agttttttaa tcggtggtgt cgtcaatcac taaatcggaa ccccaaaggg gacccccacg
      361 atttagcatt tgacgagatt aactctcgga gatggcatca tgcttttaac ggactttaaa
      421 aaacggtgaa cggatgcgga ttttaatccg tgtctgtgag gcgttgagca acgagcaaag
      481 cgaggcggta gaaagagagc cagcggcagg ctcaggacga taatccgggg aaaatgtacc
      541 actcgcagag tgttaacatt tgacatcgga ttgtctatcc tgcattggtg tcgagttggc
      601 aaggctgagg ataatgctga ggataatgct gaggataatg caggatagac agagcactag
      661 agattgcatg caatctcgta cctatcacct cagcctgccg ctggctcttt tccagaacta
      721 agaatgcgtt cttaaaaatc caaacttgat accgtttaaa tctattttca caaaaagagt
      781 ttttaccctc tcgtttgttt tctgaatata taaaattaat tcatcctcaa aaccttcgtg
      841 cggatgaaaa ccaaatgtgc caaaacttaa tccatcaata agcaaaataa ggtttttaaa
      901 cctgtcagga atcaccgctt cacttcttaa aaaaaataaa ccaatagtct tatttccatt
      961 caggtattca atattaatat tcatacgtta atccgattta tccttctcag gggcgcgttt
     1021 gtaacgccgt ttacctgaat cccagacaaa cgccgtccgc ttcccgtcat cagtgccatc
     1081 ccctacatcg tcggcaatga caagatcctc attggtttct cgatccaact ggaggacgtt
     1141 ttttagcgcc ccaccggtcg agataaaacg gcgcttgtga agctgccgcg tcagctcaag
     1201 aaaccactca ggatcgtttg ccatatcttc cggtttaacg gagtatttca gcgtttcagc
     1261 aaccgcgctt tgcagttgct cggcaacgtt ggccacaacc tcacctgtct tagtttttac
     1321 tgcccgaata tcgatattcg gctcatagtt cacccgcaag caatcgcgcc agagttctac
     1381 ccaacgttcg tgcttaacgt agttcttccc tttaaaccaa gaaggttgca ccatcagcag
     1441 acagtgaaaa tgcggatgtg cgctgccatc cttacctcgc gtcacctccg tagccctgat
     1501 ccacccctga acaggtgata gctcctttcg cttttccatt cgcttaaacg ccgcattcat
     1561 tgctgtaagg actgttccaa gttcacctat ctcgcagttc ctgacagtta acgtcagaaa
     1621 caaccatcgg gaagacgggt aatccacaac gattttcggt agagcctgat aaaaacgggc
     1681 ttgccacatg agggttcttc tccactggca gacagggcaa tgacggacac ggcaaaattg
     1741 cgcactacga agccgtaggc gcgtttctcc ggtttccatg atggtagacc aaccaaaacg
     1801 taacaaaccg ctacaggagg ccatacggag tgcatagcgc tcgaattcag cagcagtctg
     1861 gtagataccc ccgacagaat cggtaagcgt gcgctgggta tcccaaactg catcacgggg
     1921 gctgtagtcc gaaaggaatt tatcttctga cattaagcct gctccgatct gggcaggctg
     1981 tgatttgatg tggtatattc atcacgtacc tgtgcattgc gagccagtac atgtcaccag
     2041 agtttgccgc tgaggtgaca cattcgaaat gttggggagt gttgacgcac tccccaacgc
     2101 c
//
