LOCUS       NZ_CP034955             2088 bp    DNA     circular CON 19-JUN-2024
DEFINITION  Escherichia coli strain SCEC020026 plasmid p2_020026, complete
            sequence.
ACCESSION   NZ_CP034955
VERSION     NZ_CP034955.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN06909178
            Assembly: GCF_002164975.2
KEYWORDS    RefSeq.
SOURCE      Escherichia coli
  ORGANISM  Escherichia coli
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Escherichia.
REFERENCE   1  (bases 1 to 2088)
  AUTHORS   Liu,L., Long,H., Feng,Y. and Zong,Z.
  TITLE     The complete genome of Escherichia coli strain SCEC020026
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2088)
  AUTHORS   Liu,L., Long,H., Feng,Y. and Zong,Z.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-JAN-2019) Center of Infectious Diseases, West China
            Hospital, Sichuan University, Guoxuexiang 37, Chengdu, Sichuan
            610041, China
REFERENCE   3  (bases 1 to 2088)
  AUTHORS   Liu,L., Feng,Y. and Zong,Z.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-MAY-2017) Center of Infectious Diseases, West China
            Hospital, Sichuan University, Guoxuexiang 37, Chengdu, Sichuan
            610041, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.4.7
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 200.0x
            Sequencing Technology :: Illumina HiSeq; Oxford Nanopore MiniION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002164975.2-RS_2024_06_19
            Annotation Date                   :: 06/19/2024 15:53:15
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,801
            CDSs (total)                      :: 4,685
            Genes (coding)                    :: 4,445
            CDSs (with protein)               :: 4,445
            Genes (RNA)                       :: 116
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 85
            ncRNAs                            :: 9
            Pseudo Genes (total)              :: 240
            CDSs (without protein)            :: 240
            Pseudo Genes (ambiguous residues) :: 0 of 240
            Pseudo Genes (frameshifted)       :: 77 of 240
            Pseudo Genes (incomplete)         :: 154 of 240
            Pseudo Genes (internal stop)      :: 50 of 240
            Pseudo Genes (multiple problems)  :: 34 of 240
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP034955.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2088
                     /organism="Escherichia coli"
                     /mol_type="genomic DNA"
                     /strain="SCEC020026"
                     /host="Homo sapiens"
                     /db_xref="taxon:562"
                     /plasmid="p2_020026"
                     /geo_loc_name="China: Sichuan"
                     /collection_date="2016-09"
     gene            join(1887..2088,1..65)
                     /locus_tag="C7V14_RS00030"
                     /old_locus_tag="C7V14_00030"
     CDS             join(1887..2088,1..65)
                     /locus_tag="C7V14_RS00030"
                     /old_locus_tag="C7V14_00030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001024536.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_001024536.1"
                     /translation="MNINIEYLNGNKTIGLFFLRSEAVIPDRFKNLILLIDGLSFGTFG
                     FHPHEGFEDELILYIQKTNERVKTLFVKIDLNGIKFGFLRTHS"
                     /name="hypothetical protein"
     gene            918..1883
                     /locus_tag="C7V14_RS00040"
                     /old_locus_tag="C7V14_00040"
     CDS             918..1883
                     /locus_tag="C7V14_RS00040"
                     /old_locus_tag="C7V14_00040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012421200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_039064478.1"
                     /translation="MSEDKFLSDYSPRDAVWDTQRTLTDSVGGIYQTAAEFERYALRMA
                     SCSGLLRFGWSTIMETGETRLRLRSAQFCRVRHCPVCQWRRTLMWQARFYQALPKIVVD
                     YPSSRWLFLTLTVRNCEIGELGTVLTAMNAAFKRMEKRKELSPVQGWIRATEVTRGKDG
                     SAHPHFHCLLMVQPSWFKGKNYVKHERWVELWRDCLRVNYEPNIDIRAVKTKTGEVVAN
                     VAEQLQSAVAETLKYSVKPEDMANDPEWFLELTRQLHKRRFISTGGALKNVLQLDRETN
                     EDLAIADDVGDGTDDGKRTAFVWDSGKRRYKRAPEKDKSD"
                     /name="protein rep"
     Typing          1312..1543
                     /name="Col(BS512)"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="2.05e-118"
ORIGIN
        1 aaactctttt tgtgaaaata gatttaaacg gtatcaagtt tggattttta agaacgcatt
       61 cttagttctg gaaaagagcc agcggcaggc tgaggtgata ggtacgagat tgcatgcaat
      121 ctctagtgct ctgtctatcc tgcattatcc tcagcattat cctcagcctt gccaactcga
      181 caccaatgca ggatagacaa tccgatgtca aatgttaaca ctctgcgagt ggtacatttt
      241 ccccggatta tcgtcctgag cctgccgctg gctctctttc taccgcctcg ctttgctcgt
      301 tgctcaacgc ctcacagaca cggattaaaa tccgcatccg ttcaccgttt tttaaagtcc
      361 gttaaaagca tgatgccatc tccgagagtt aatctcgtca aatgctaaat cgtgggggtc
      421 ccctttgggg ttccgattta gtgattgacg acaccaccga ttaaaaaact tatgcggggt
      481 ggatggtttc acgaagtgag gccatccacc tgtaagacag ggttttgttt ttatcccctg
      541 ttttggtgat cgggtgtgtg gaaaaggttg gggtaagccg ttcggggtgc ttgttttggg
      601 gggttaaaat tgtggttatt ttttgcgcaa ttctcgcgcg tgatccttgt atttatactt
      661 aagggataaa tggcgggtat gaaatagtgg tttagcccag taatgacgag gctttgagtg
      721 ggttttgaca ggtcaaagaa aatggagcag aattgaggcg tttttaatcg gcgttgggga
      781 gtgcgtcaac actccccaac atttcgaatg tgtcacctca gcggcaaact ctggtgacat
      841 gtactggctc gcaatgcaca ggtacgtgat gaatatacca catcaaatca cagcctgccc
      901 agatcggagc aggcttaatg tcagaagata aattcctttc ggactacagc ccccgtgatg
      961 cagtttggga tacccagcgc acgcttaccg attctgtcgg gggtatctac cagactgctg
     1021 ctgaattcga gcgctatgca ctccgtatgg cctcctgtag cggtttgtta cgttttggtt
     1081 ggtctaccat catggaaacc ggagaaacgc gcctacggct tcgtagtgcg caattttgcc
     1141 gtgtccgtca ttgccctgtc tgccagtgga gaagaaccct catgtggcaa gcccgttttt
     1201 atcaggctct accgaaaatc gttgtggatt acccgtcttc ccgatggttg tttctgacgt
     1261 taactgtcag gaactgcgag ataggtgaac ttggaacagt ccttacagca atgaatgcgg
     1321 cgtttaagcg aatggaaaag cgaaaggagc tatcacctgt tcaggggtgg atcagggcta
     1381 cggaggtgac gcgaggtaag gatggcagcg cacatccgca ttttcactgt ctgctgatgg
     1441 tgcaaccttc ttggtttaaa gggaagaact acgttaagca cgaacgttgg gtagaactct
     1501 ggcgcgattg cttgcgggtg aactatgagc cgaatatcga tattcgggca gtaaaaacta
     1561 agacaggtga ggttgtggcc aacgttgccg agcaactgca aagcgcggtt gctgaaacgc
     1621 tgaaatactc cgttaaaccg gaagatatgg caaacgatcc tgagtggttt cttgagctga
     1681 cgcggcagct tcacaagcgc cgttttatct cgaccggtgg agcgctaaaa aacgtcctcc
     1741 agttggatcg agaaaccaat gaggatcttg ccattgccga cgatgtaggg gatggcactg
     1801 atgacgggaa gcggacggcg tttgtctggg attcaggtaa acggcgttac aaacgcgccc
     1861 ctgagaagga taaatcggat taacgtatga atattaatat tgaatacctg aatggaaata
     1921 agactattgg tttatttttt ttaagaagtg aagcggtgat tcctgacagg tttaaaaacc
     1981 ttattttgct tattgatgga ttaagttttg gcacatttgg ttttcatccg cacgaaggtt
     2041 ttgaggatga attaatttta tatattcaga aaacaaacga gagggtaa
//
