LOCUS       NZ_CP034830             1718 bp    DNA     circular CON 30-JUL-2023
DEFINITION  Salmonella sp. SSDFZ54 plasmid pTB511, complete sequence.
ACCESSION   NZ_CP034830
VERSION     NZ_CP034830.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10689135
            Assembly: GCF_004010735.1
KEYWORDS    RefSeq.
SOURCE      Salmonella sp. SSDFZ54
  ORGANISM  Salmonella sp. SSDFZ54
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 1718)
  AUTHORS   Tang,B., Chang,J., Zhang,L., Liu,L., Xia,X., Hassan,B.H., Jia,X.,
            Yang,H. and Feng,Y.
  TITLE     Carriage of Distinct mcr-1-Harboring Plasmids by Unusual Serotypes
            of Salmonella
  JOURNAL   Adv Biosyst 4 (3), e1900219 (2020)
   PUBMED   32293141
REFERENCE   2  (bases 1 to 1718)
  AUTHORS   Tang,B., Chang,J., Ma,Y., Zhang,L. and Xia,X.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-JAN-2019) Institute of Quality and Standard for
            Agro-products, Zhejiang Academy of Agricultural Sciences, 198
            Shiqiao Road, Hangzhou, Zhejiang 310021, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: HGAP v. NOV-2018
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 320.0x
            Sequencing Technology             :: PacBio RSII
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 07/30/2023 10:35:31
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,141
            CDSs (total)                      :: 5,019
            Genes (coding)                    :: 4,864
            CDSs (with protein)               :: 4,864
            Genes (RNA)                       :: 122
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 87
            ncRNAs                            :: 13
            Pseudo Genes (total)              :: 155
            CDSs (without protein)            :: 155
            Pseudo Genes (ambiguous residues) :: 0 of 155
            Pseudo Genes (frameshifted)       :: 53 of 155
            Pseudo Genes (incomplete)         :: 113 of 155
            Pseudo Genes (internal stop)      :: 33 of 155
            Pseudo Genes (multiple problems)  :: 39 of 155
            Pseudo Genes (short protein)      :: 1 of 155
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP034830.1.
            Bacteria and source DNA available from Biao Tang.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1718
                     /organism="Salmonella sp. SSDFZ54"
                     /mol_type="genomic DNA"
                     /strain="SSDFZ54"
                     /isolation_source="feces"
                     /db_xref="taxon:2500542"
                     /plasmid="pTB511"
                     /geo_loc_name="China:Zhejiang"
                     /collection_date="2018-03"
     gene            complement(830..1234)
                     /locus_tag="EOS97_RS26670"
                     /old_locus_tag="EOS97_26670"
     CDS             complement(830..1234)
                     /locus_tag="EOS97_RS26670"
                     /old_locus_tag="EOS97_26670"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_061604172.1"
                     /translation="MKILAAMEIADCDFEHMDMDVLVGALLKLKLWDSHHHNLNMQGKR
                     SFLDDLRADGIEAIKKYEAEIESENESFAEERLILRIYQNELGLWLGRLFCGEAEIGQC
                     GVYGSADEVRTAARQSGILCDSIEIFQKDA"
                     /name="hypothetical protein"
     gene            complement(1448..1684)
                     /locus_tag="EOS97_RS26675"
                     /old_locus_tag="EOS97_26675"
     CDS             complement(1448..1684)
                     /locus_tag="EOS97_RS26675"
                     /old_locus_tag="EOS97_26675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016230891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_016230891.1"
                     /translation="MTRLTNLTPAEKKFIDDAIAAAERAAGKKLNQPNRHIVLNRARAQ
                     IESQRYADRQRALREDERQQSDFAWSRPRAPRR"
                     /name="hypothetical protein"
     Typing          complement(124..208)
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="96.512"
                     /coverage="100.0"
                     /evalue="3.06e-32"
ORIGIN
        1 gccagacaca gtaggaacga tgaagcgtaa gcgacggtga aaggcagtca gaaacggtga
       61 acgggagcgg attttaatcc ggtgccgtga ggcgttggac aagccgcagg cgcgtcagtg
      121 gatttagcgg gtttcggggc gcagccctga accagtcacg tagcgctagc ggagtgtata
      181 ctggcttaat atgttggcat aggtgcggtt atcaggaaag tgcgtcatgt ggcaggtgtg
      241 atatgtggct cagaagcgtc cgcaatacca tgcccgaata gtgaaatgat gcctcctcgc
      301 tcactcggtc gctacgctcc ggacgtgaga ctgcggcggg cactacaact tttttcacat
      361 acatgaagtg aggtgtgacg gggatcttgt tgaaagatca ggctacagat gtacaaaagc
      421 cccgtgacag aatcacaggg cttcggtact ctaattcttc gcagatacct gccaggatca
      481 gacgtagcaa tcctatccta gcagggctgg ctagccttgt cactaccagc ttaataccat
      541 tcaacgacat taaaatcata tctgcaccct tgaaactcag gtctacgccc cggactccgg
      601 caggataaac aggcaaacgg tggaaacgta acttaaccgc gaaagagtta agctctaccc
      661 cgtctcgctg tacgataaca ggcacctgat aaagtgagat tcaaggcagg agttgcggtg
      721 aaatgcgatt gcccagtctg gcacaacacc cacacaatca gaacaacata gaacgacctg
      781 acgctggtcg ctccgctccc cgttttctgg tgtacccacc acgggggcat taggcatcct
      841 tttgaaaaat ttcgatgcta tcgcacaaaa taccgctttg acgcgcagct gttcgaacct
      901 catcagccga tccataaaca ccacactgac cgatctcagc ctcaccacaa aagagcctcc
      961 ctaaccataa gccaagctcg ttctgataga tcctcagtat taatcgctcc tccgcaaagg
     1021 actcattctc agattcaatt tcagcctcgt atttcttaat agcctcaata ccatccgctc
     1081 ttaaatcatc gagaaagctc ctcttacctt gcatgttcaa gttgtgatgg tggctatccc
     1141 acaattttaa tttcagtaaa gcccctacta agacatccat atccatatgt tcaaaatcac
     1201 aatcagctat ttccattgca gccaaaatct tcatacaccc tccgatttac cataacatcc
     1261 gttatcagca ccccctgaca ggccctcagc gcaattctga cgcatcagag ccgtttccgg
     1321 cacatttcct cacccacatc ccggaaaaac gcccctgatg atttctgcgc gactgcatag
     1381 ctatgcacgc gggtgaaccg caggtgattt cgcagcatca gcaccactaa accgccaaaa
     1441 tccgcaatca gcggcgcggc gcgcgcggac gtgaccaggc aaaatcggac tgctgccgct
     1501 catcctcacg taatgcacgc tggcggtcgg cgtaacgctg cgactcaatc tgcgcacgcg
     1561 ctctgttcag gacgatgtgc cggttaggct gattgagctt cttcccggcc gcacgttcgg
     1621 cagcggctat agcgtcgtcg ataaactttt tctcagcggg ggtcaggttt gtcagtctcg
     1681 tcatgtttat ctccgtatga gaatagcccc tgcagtct
//
