LOCUS       NZ_CP034829             1986 bp    DNA     circular CON 30-JUL-2023
DEFINITION  Salmonella sp. SSDFZ54 plasmid pTB510, complete sequence.
ACCESSION   NZ_CP034829
VERSION     NZ_CP034829.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10689135
            Assembly: GCF_004010735.1
KEYWORDS    RefSeq.
SOURCE      Salmonella sp. SSDFZ54
  ORGANISM  Salmonella sp. SSDFZ54
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 1986)
  AUTHORS   Tang,B., Chang,J., Zhang,L., Liu,L., Xia,X., Hassan,B.H., Jia,X.,
            Yang,H. and Feng,Y.
  TITLE     Carriage of Distinct mcr-1-Harboring Plasmids by Unusual Serotypes
            of Salmonella
  JOURNAL   Adv Biosyst 4 (3), e1900219 (2020)
   PUBMED   32293141
REFERENCE   2  (bases 1 to 1986)
  AUTHORS   Tang,B., Chang,J., Ma,Y., Zhang,L. and Xia,X.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-JAN-2019) Institute of Quality and Standard for
            Agro-products, Zhejiang Academy of Agricultural Sciences, 198
            Shiqiao Road, Hangzhou, Zhejiang 310021, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: HGAP v. NOV-2018
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 320.0x
            Sequencing Technology             :: PacBio RSII
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 07/30/2023 10:35:31
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,141
            CDSs (total)                      :: 5,019
            Genes (coding)                    :: 4,864
            CDSs (with protein)               :: 4,864
            Genes (RNA)                       :: 122
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 87
            ncRNAs                            :: 13
            Pseudo Genes (total)              :: 155
            CDSs (without protein)            :: 155
            Pseudo Genes (ambiguous residues) :: 0 of 155
            Pseudo Genes (frameshifted)       :: 53 of 155
            Pseudo Genes (incomplete)         :: 113 of 155
            Pseudo Genes (internal stop)      :: 33 of 155
            Pseudo Genes (multiple problems)  :: 39 of 155
            Pseudo Genes (short protein)      :: 1 of 155
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP034829.1.
            Bacteria and source DNA available from Biao Tang.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1986
                     /organism="Salmonella sp. SSDFZ54"
                     /mol_type="genomic DNA"
                     /strain="SSDFZ54"
                     /isolation_source="feces"
                     /db_xref="taxon:2500542"
                     /plasmid="pTB510"
                     /geo_loc_name="China:Zhejiang"
                     /collection_date="2018-03"
     gene            complement(91..393)
                     /locus_tag="EOS97_RS26650"
                     /old_locus_tag="EOS97_26650"
     CDS             complement(91..393)
                     /locus_tag="EOS97_RS26650"
                     /old_locus_tag="EOS97_26650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005161566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TM2 domain-containing protein"
                     /protein_id="WP_031942343.1"
                     /translation="MSSMVYCRGCGKEIHETAKSCPHCGATNASSGSGEKSRIAAALLA
                     FFLGGFGAHKFYLGKIGQGFLYLIFCWTFIPAIIAFIEFIIYLCDSDEKFARKYG"
                     /name="TM2 domain-containing protein"
     gene            1582..1818
                     /locus_tag="EOS97_RS26665"
                     /old_locus_tag="EOS97_26665"
     CDS             1582..1818
                     /locus_tag="EOS97_RS26665"
                     /old_locus_tag="EOS97_26665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001676031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_016947370.1"
                     /translation="MKRLINLTPAEKRFLDDAVAAAERASGKKLNQPNRHIVLNRARAQ
                     IESQRQAERQRSAREEERQQAEFTWSRPRAPRR"
                     /name="hypothetical protein"
     Typing          1174..1344
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="90.751"
                     /coverage="98.0"
                     /evalue="5.74e-58"
     Typing          complement(704..1207)
                     /name="rep_cluster_2335"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="91.7"
                     /coverage="96.0"
                     /evalue="0.0"
ORIGIN
        1 tttcgcggtg cgcccaaggg atgttatgtt taatcggtct gaccgtcagg tacaaaaaaa
       61 agcccttagg gggctttttt ttgctatgag ttagccatat tttcgtgcga atttttcatc
      121 ggaatcgcat agataaataa taaactcaat aaacgcgatg atcgcgggta tgaatgtcca
      181 gcaaaaaatt agatacagga acccctgtcc tatttttcct aagtaaaatt tatgtgcgcc
      241 aaatccacca aggaagaatg ctaatagcgc ggctgcgatt ctactttttt cacctgaacc
      301 tgaagaggcg tttgtggctc cgcagtgcgg gcatgacttt gctgtttcgt gtatttcctt
      361 gccacatcct cggcagtaaa ccattgaact cattttttat cctcgagctt attttaattg
      421 ggatcataat atccgatgtt ttataacgat gtgtatccta tgtgctcgga ttggatagat
      481 ttccattacg gtgaaggatc ttcttgagat cctttctgtg gcgtcgtaat ctcttgctct
      541 gtaaacgaaa aaaccgccct gcaaggcggt ttttcgaagg ttctcagagc agtaactctt
      601 tgaaccgtgg taactggctt acgaggagcg cagtaaccaa atctgttctt tcagtttagc
      661 cttaacaggc gcataacttc aagactaact cctctaaatc agttaccagt ggctgctgcc
      721 agtggcgata agtcgtgtct ttccgggttg gactcaagat gatagttacc ggataaggcg
      781 cagcagtcgg actgaacggg gggttcgtgc atacagtcca tccaggagcg aactgccttc
      841 gcggaactga gtgtcaggcg tggaatgaga taaacgcggc cataacagcg gaatgacacc
      901 ggtaaaccga aaggcaggaa tgcgggggag cacgagggag ccaccagggg gaaacgcctg
      961 gtatctttaa gccgcatcgg gtttcgccac cactgatttg agcgtcagat ttcgtgatgc
     1021 ttgtcagggg ggcggagcct atggaaaaac ggctttgccg cggccctatc gcttccctgt
     1081 taagtctctt cctggcatct tccaggaaat ccctgccccg ttcgtaagcc atttccgctc
     1141 gccgcagtcg aacgaccgag cgtagcgagt cagtgagcga ggaagcggaa tatatcctgt
     1201 atcacatatt ctgctgacgc accggtgcag ccttttttct cctgccacat gaagcacttc
     1261 cctgagccac cactccgaac taacatatta agccagtata cactccgcta gcgctacgtg
     1321 actggtccgg cgctgcgccc ggaacccgca aattcagaaa ctgaaagtgg gacaagatgt
     1381 gtttttggag taccgccatc acgatgccgg caccaaaacg atatctcagg gctgcgcccc
     1441 gataccccgc caacgcttca cggcaccgga ttaaaatccg ttcccgttca ccgtttctca
     1501 gggccgttcc cggctgcagg ttcttcatga ggttcgccgt gtctggcaga ctgtgcagag
     1561 ttattctgac cggagaacgc catgaaacga ctgataaacc tgacgcccgc cgagaaaaga
     1621 tttctcgacg atgctgttgc cgccgctgag agagcgtcag gcaagaagct gaatcagccc
     1681 aacaggcaca ttgtccttaa cagggctcgt gcacagatcg aatcgcagcg ccaggcagaa
     1741 cggcagcgat ctgcgcgtga ggaggagcgg cagcaggcgg aatttacttg gtcgcgtccg
     1801 cgggcgccgc gtcgctgatt gccactttcg ccggtttcgt ggggagttca gggcgaaaca
     1861 gcgtggtatt cacttcggtg catagtcatt cacccccgta aaactcacca gagcgattcc
     1921 gggcggtttt ctgggggtaa gacgtgctct tttgtggctg aaggcgcaga aacggcctga
     1981 ggtcgt
//
