LOCUS       NZ_CP034828             2020 bp    DNA     circular CON 30-JUL-2023
DEFINITION  Salmonella sp. SSDFZ54 plasmid pTB509, complete sequence.
ACCESSION   NZ_CP034828
VERSION     NZ_CP034828.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10689135
            Assembly: GCF_004010735.1
KEYWORDS    RefSeq.
SOURCE      Salmonella sp. SSDFZ54
  ORGANISM  Salmonella sp. SSDFZ54
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 2020)
  AUTHORS   Tang,B., Chang,J., Zhang,L., Liu,L., Xia,X., Hassan,B.H., Jia,X.,
            Yang,H. and Feng,Y.
  TITLE     Carriage of Distinct mcr-1-Harboring Plasmids by Unusual Serotypes
            of Salmonella
  JOURNAL   Adv Biosyst 4 (3), e1900219 (2020)
   PUBMED   32293141
REFERENCE   2  (bases 1 to 2020)
  AUTHORS   Tang,B., Chang,J., Ma,Y., Zhang,L. and Xia,X.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-JAN-2019) Institute of Quality and Standard for
            Agro-products, Zhejiang Academy of Agricultural Sciences, 198
            Shiqiao Road, Hangzhou, Zhejiang 310021, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: HGAP v. NOV-2018
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 320.0x
            Sequencing Technology             :: PacBio RSII
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 07/30/2023 10:35:31
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,141
            CDSs (total)                      :: 5,019
            Genes (coding)                    :: 4,864
            CDSs (with protein)               :: 4,864
            Genes (RNA)                       :: 122
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 87
            ncRNAs                            :: 13
            Pseudo Genes (total)              :: 155
            CDSs (without protein)            :: 155
            Pseudo Genes (ambiguous residues) :: 0 of 155
            Pseudo Genes (frameshifted)       :: 53 of 155
            Pseudo Genes (incomplete)         :: 113 of 155
            Pseudo Genes (internal stop)      :: 33 of 155
            Pseudo Genes (multiple problems)  :: 39 of 155
            Pseudo Genes (short protein)      :: 1 of 155
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP034828.1.
            Bacteria and source DNA available from Biao Tang.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2020
                     /organism="Salmonella sp. SSDFZ54"
                     /mol_type="genomic DNA"
                     /strain="SSDFZ54"
                     /isolation_source="feces"
                     /db_xref="taxon:2500542"
                     /plasmid="pTB509"
                     /geo_loc_name="China:Zhejiang"
                     /collection_date="2018-03"
     gene            complement(195..431)
                     /locus_tag="EOS97_RS26625"
                     /old_locus_tag="EOS97_26625"
     CDS             complement(195..431)
                     /locus_tag="EOS97_RS26625"
                     /old_locus_tag="EOS97_26625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001676031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_001676031.1"
                     /translation="MNRLTNLTPAEKKFLDDAIAAAERASGKKLNQPNRHIVLNRARAQ
                     IESQRYADRQRALREDERQQSEFAWSRPRAPRR"
                     /name="hypothetical protein"
     gene            1645..1962
                     /locus_tag="EOS97_RS26645"
                     /old_locus_tag="EOS97_26645"
     CDS             1645..1962
                     /locus_tag="EOS97_RS26645"
                     /old_locus_tag="EOS97_26645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000718044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_023224510.1"
                     /translation="MKKIFILSAALIMAGCATKQYPQAANVTGPESSAMDCKAVALEIA
                     KTRSVQQEIEATGEFDGRTVLGFLGDFGIGNGMAKGEARKKAANRLNQLEALKAAKCAD
                     Q"
                     /name="hypothetical protein"
     Typing          complement(596..769)
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="96.571"
                     /coverage="100.0"
                     /evalue="2.6e-76"
     Typing          693..1238
                     /name="rep_cluster_2335"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="94.182"
                     /coverage="90.0"
                     /evalue="0.0"
ORIGIN
        1 aacatccgtt gtctgcactg cctgagaggc cctcagcgcg tttctgcggc ctgacagccg
       61 tttccggcac ctttcaccgc accaacccct gaaaaacgcc cctgatgatt tctgcgcgtc
      121 tgcatggcta ttcacaggag tgaatggcgg gcaatttcgg agtgtcagta ccactaaacc
      181 gccaaaaggc gcaatcagcg gcgcggcgcg cgcggacgtg accaggcaaa ctcggactgc
      241 tgccgctcat cctcacgtaa tgcacgctgg cggtcggcgt aacgctgcga ctcaatctgc
      301 gcacgcgctc tgttcaggac gatatgccgg ttcggctgat ttagcttttt gcctgacgct
      361 ctctcagctg cggcaatagc atcatcaaga aattttttct ctgcaggtgt caggtttgtc
      421 agtctgttca tagcattctc ccatcagaat aacgccgcac agtctgccag acacagcaga
      481 accgatgaag cgctggcggt gctgaaagac agccagaaac ggtgaacggg agcggatttt
      541 aatccggtga cgtgagacgt tgggcaagcc gcaggcgcgt cagtggtttt agcgggtttc
      601 ggggcgcagc cctgaaccag tcacgcagcg ctagcggagt gtatactggc ttactatgtt
      661 ggcacggatg cgaataccag tgaagtgctt catgtggcag gagaaaaaag gcggcaccgg
      721 cgcgtcagca gaatatgcga tacaggatat attccgcttc ctcgctcact gactcgctgc
      781 gctcggtcgt tcggctgcgg cgagcggtgc gggcttactg gcggggcgga aatttcctgg
      841 aagatgccag gacgaaactt aacggggaag cgataaggcc gcggcgaagc cgtttttcca
      901 taggctccgc ccccctgaca agcatcacga aatctgacgc tcaaatcagt ggtggcgaaa
      961 cccgacagga cttaaagata ccaggcgttt ccccctggtg gctccctcgt gcgctctcct
     1021 gttcctgcct ttcggtttac cggtgtcatt ccgctgttat ggccgcgttt tctcattcca
     1081 cgcctgacac tcagttccgg gaaggcagtt cgctccaagc tggactgtat gcacgaaccc
     1141 cccgttcagt ccgactgctg cgccttatcc ggtaactatc gtcttgagtc caacccggaa
     1201 agacacgaca aagcgccact ggcagcagcc actggtaaca ggattagcag agcgagttaa
     1261 tttaggtggt gctatagagt tcttgaagtg gtggcctaac tacggctaca ctggaaggac
     1321 agtatttggt atctgcgctc tgctgaagcc agttaccacg gttagaaaat ctgccaggat
     1381 ttactaacct tcgaaaaacc acctccccgg gtggtttttt cgttttcaga gcaagagatt
     1441 acgcgtagaa aaaaaggaac tcaagaagat cctttctatg ctcaaccacc gcatggccca
     1501 tagccgcgct ggccgttgcc ggtcagctcc agaatcctcg accaatatgg aaccttgccc
     1561 ctcccaaaat tcaactaaaa aaccctcatt tcctgccgat aaaatgggta tttcttaact
     1621 atgcctaaat aaataaggat aattttgaaa aaaatattca tcctatcggc agcgctgatc
     1681 atggcaggat gcgcaacaaa gcaatatcca caggccgcga acgtcaccgg tccagaatct
     1741 tccgcaatgg attgcaaagc ggtagctctg gaaatcgcca aaacgcgcag tgtacaacaa
     1801 gaaattgagg caaccggcga atttgacggg cgcaccgtat taggtttcct gggtgatttt
     1861 gggataggaa atggcatggc aaaaggcgaa gcccgcaaaa aagcagctaa ccggctaaat
     1921 cagctggaag ccctgaaggc tgcaaagtgt gcagatcaat aaggtacaaa aaagccctgc
     1981 ggggcttttt ttgtacctgc caatcagctg gatttaccat
//
