LOCUS       NZ_CP034827             3175 bp    DNA     circular CON 30-JUL-2023
DEFINITION  Salmonella sp. SSDFZ54 plasmid pTB508, complete sequence.
ACCESSION   NZ_CP034827
VERSION     NZ_CP034827.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10689135
            Assembly: GCF_004010735.1
KEYWORDS    RefSeq.
SOURCE      Salmonella sp. SSDFZ54
  ORGANISM  Salmonella sp. SSDFZ54
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 3175)
  AUTHORS   Tang,B., Chang,J., Zhang,L., Liu,L., Xia,X., Hassan,B.H., Jia,X.,
            Yang,H. and Feng,Y.
  TITLE     Carriage of Distinct mcr-1-Harboring Plasmids by Unusual Serotypes
            of Salmonella
  JOURNAL   Adv Biosyst 4 (3), e1900219 (2020)
   PUBMED   32293141
REFERENCE   2  (bases 1 to 3175)
  AUTHORS   Tang,B., Chang,J., Ma,Y., Zhang,L. and Xia,X.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-JAN-2019) Institute of Quality and Standard for
            Agro-products, Zhejiang Academy of Agricultural Sciences, 198
            Shiqiao Road, Hangzhou, Zhejiang 310021, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: HGAP v. NOV-2018
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 320.0x
            Sequencing Technology             :: PacBio RSII
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 07/30/2023 10:35:31
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,141
            CDSs (total)                      :: 5,019
            Genes (coding)                    :: 4,864
            CDSs (with protein)               :: 4,864
            Genes (RNA)                       :: 122
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 87
            ncRNAs                            :: 13
            Pseudo Genes (total)              :: 155
            CDSs (without protein)            :: 155
            Pseudo Genes (ambiguous residues) :: 0 of 155
            Pseudo Genes (frameshifted)       :: 53 of 155
            Pseudo Genes (incomplete)         :: 113 of 155
            Pseudo Genes (internal stop)      :: 33 of 155
            Pseudo Genes (multiple problems)  :: 39 of 155
            Pseudo Genes (short protein)      :: 1 of 155
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP034827.1.
            Bacteria and source DNA available from Biao Tang.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3175
                     /organism="Salmonella sp. SSDFZ54"
                     /mol_type="genomic DNA"
                     /strain="SSDFZ54"
                     /isolation_source="feces"
                     /db_xref="taxon:2500542"
                     /plasmid="pTB508"
                     /geo_loc_name="China:Zhejiang"
                     /collection_date="2018-03"
     gene            complement(1033..1428)
                     /locus_tag="EOS97_RS26610"
                     /old_locus_tag="EOS97_26610"
     CDS             complement(1033..1428)
                     /locus_tag="EOS97_RS26610"
                     /old_locus_tag="EOS97_26610"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_001222910.1"
                     /translation="MRISNIDWLKKRIGFIRKLGEQTARQRQIIDLLDNEAGLTEQERK
                     LLHVLATAEKNELQAQENARKQANQKRMEGKTQRRERNHRLFLAAGLLIEAGLVDTKTG
                     ELRYPKDNILQKLKAIRLDLETSPDHH"
                     /name="hypothetical protein"
     gene            1608..2561
                     /locus_tag="EOS97_RS26615"
                     /old_locus_tag="EOS97_26615"
     CDS             1608..2561
                     /locus_tag="EOS97_RS26615"
                     /old_locus_tag="EOS97_26615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016235474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobA/MobL family protein"
                     /protein_id="WP_001360358.1"
                     /translation="MATYHLNVKFGGKGQAGNHADYIERKGEYEKRKDLEYSEHGNMPG
                     WARDNPSHFWQAADQFERANGSTYREIEIALPRELTPDQRIELVQDFVRQVAGERHAYS
                     FAIHNPKASIDGGEQPHAHIMMSQRINDGMERSPEQYFRRYNAKNPERGGAKKDSGNLT
                     PTQQKEQLRTLRASWSALQNEHLARHGHRVRVDHRSLEERGIKRTPERHFGFAASSRLD
                     HAQRREILQNRAQPLEHFLEKAHSVRHQFDAQVQQKELVKTLLQDVARERGHALTARIN
                     KTGEVEFERAPTRTRSNTRGHGMGIRDNSRGYDYER"
                     /name="MobA/MobL family protein"
     gene            2573..3103
                     /locus_tag="EOS97_RS26620"
                     /old_locus_tag="EOS97_26620"
     CDS             2573..3103
                     /locus_tag="EOS97_RS26620"
                     /old_locus_tag="EOS97_26620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000168768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_000168766.1"
                     /translation="MASTEEGLLTLLLSVEHLKNTAIEQQKAVADTLAVARETLRGYRD
                     ISDSVVKQVSDEVRKGVQKTDIAGLMGERMTQDFQRLEETVAKMRANAEALNKDIATIH
                     HNVVKEYNTLNKYSLKWFIGVTVSFLVMFSLLGWFTKTLIDRNYTATEVVYQKIVDIEK
                     KLDKPATGKSRKN"
                     /name="hypothetical protein"
     Typing          1609..2558
                     /name="MOBQ"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="99.685"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 aagtttgccg ttttgacccg ttcggtgctc agatttggcg aaattgattc cgaatcactt
       61 ttgtgaatag ttatgcaagc ccctggaaac gtttctgacg cgttttttga ggtaggggtg
      121 ggggaaagca tggttttttg atgttttgag cgtaaaagcg tgaaaaatcg cgttattgtg
      181 cttgcgatct ttcgtcaggg agcgtagaac gaaaaaagcc cgccgttagg cgagcttctt
      241 cgggttcatt gaggttttcg acctcctcaa tgttcctgtg gagtctgttg cggcgacaac
      301 ggaaaccagt tcattcagtt tgcatgaacc ttctgtattc ttcaagcatt accgaccgca
      361 cagcctcccc agaatcccga aaaaatcctg tttttgcaga tgattgcgtg tttgcaaaga
      421 ccgtttgcgg ttgggggagc tgtgacgacg gcaaccgcac gcgtgagagt tccgctaccg
      481 gcgcagagag tttcatcgac agcggacacc tgatgagttg ccacaaaaac cgtatgtagc
      541 gcggctagat tggttgagtt agaccttggc ggcagttccc ggtatgtggt ggcgtgacgg
      601 gtgagatggt gcggcgaaga cgcatacgtc acgcaggcgc gggttcttcc accgacgcgc
      661 cccgtgatcg atggccttgg ctccgtccgg catatcgaga gcggcaaact acccgtccct
      721 tcactgggag gggtgagttg ttgccgttcc ctccgacctt ccaccatcca gcatatcgca
      781 cgatcccatg agcaccgcaa caactgataa ctccagagca aaaaaaaaaa aaaggatctg
      841 catcatgtga gagtgatccc accgctcgcc gcagccccag cgaccgaacg tagtgagcga
      901 gtgggcgagg aagcggaagt gaaccggaaa ccacattgag cacgtacgca cctatgccag
      961 atccgcgcgt agcgcgtcgc gaaatcgaaa acattgaaca ccggcaggca aacgcaccac
     1021 cacgcagcgg aattaatgat gatctgggct tgtttcaaga tcgagcctga ttgccttaag
     1081 tttctgtaat atattgtctt ttgggtatct cagttcgcct gtttttgtgt ccactagtcc
     1141 ggcctcgatc agtaaccccg ccgcaagaaa caggcggtga ttgcgttccc gtcgttgtgt
     1201 tttcccctcc atccgttttt ggttggcctg tttgcgtgcg ttctcctgtg cctgtagctc
     1261 gtttttttct gcggttgcca ggacgtggag tagtttgcgc tcctgttctg ttagtccggc
     1321 ttcgttatcg agcaggtcaa tgatctgcct ctgtcgtgcg gtctgttctc cgagcttcct
     1381 gataaagccg attcgtttct tcaaccagtc gatgttgctg atgcgcatgt ttgggatgct
     1441 ccctggtgtt ttttgcggtg tgttggggtt gtgcagtata tcgcttgcgg tgggtgggtg
     1501 caggggggta tcttccgtgc taattcgtaa aattagcagg aagcgcactt atatgtttct
     1561 tcgccgttgg ctcagaaaca tgtgcgctcc tgcggagggc taacaccgtg gcaacctatc
     1621 acctcaatgt aaaatttggc ggcaagggac aggccggaaa ccatgccgat tacatcgaac
     1681 gcaaaggcga gtacgagaaa cgaaaagatc tggaatactc agagcacggg aatatgccag
     1741 gctgggcgcg agataatccc tcccatttct ggcaagcggc tgatcagttt gaacgtgcga
     1801 atggttcgac ttatcgggag atcgaaatcg ccttgccgcg tgaactgaca ccggatcagc
     1861 gcattgaact ggtgcaggat tttgtgcgtc aggtagctgg agaacggcac gcctatagct
     1921 ttgccattca caatccaaaa gcgagcattg acggagggga acagcctcat gcgcatatca
     1981 tgatgagcca gcgtattaac gatggtatgg aacgttcgcc ggaacagtat ttccggcgtt
     2041 ataacgccaa gaatcccgaa cggggaggcg caaaaaaaga ttcaggcaat ctgacaccga
     2101 ctcagcaaaa agagcaattg cggacgttac gggcgagctg gtcagcgtta cagaacgagc
     2161 atttagcgcg tcatggtcac agggtgcgcg ttgaccatcg ctcactggaa gaacgcggaa
     2221 ttaaacgcac gccagaacgg catttcggat ttgccgcctc atcacggctt gatcatgcgc
     2281 agcgccgcga aatcctgcaa aaccgagcgc agccgctcga acattttcta gagaaagcgc
     2341 attcggttcg ccatcaattt gatgcacaag ttcagcaaaa agagttagtt aaaacgcttt
     2401 tacaggacgt cgcacgggag cgagggcacg cgcttacggc aagaataaat aaaacaggtg
     2461 aagttgaatt tgaacgtgcg ccaacgcgga cgcggagtaa cacgcgaggg cacggcatgg
     2521 gcattcgtga caactcacgc gggtacgact acgaacgtta aaaggggact gtatggcgag
     2581 tacagaagag gggttgctca cgctcttgtt gtccgttgag catttgaaaa acactgcgat
     2641 agaacaacag aaagcggttg cagacacgct ggcggtcgca agggaaacac tgcgggggta
     2701 tcgggatatt tctgacagtg ttgtaaaaca ggttagcgat gaagtcagaa aaggggtaca
     2761 gaaaacggac attgcggggc tgatgggtga gcgcatgacc caggattttc agcgtcttga
     2821 agagactgtg gcaaagatga gagccaacgc ggaggcgctt aacaaggaca ttgcgacaat
     2881 tcatcacaat gttgttaaag aatacaacac gctcaataaa tacagtctga aatggtttat
     2941 cggtgttacg gtcagttttc tggtcatgtt ctcgttgctt ggctggttta ccaaaacgtt
     3001 gatcgacagg aactacaccg cgacggaggt cgtgtatcag aaaattgttg atattgaaaa
     3061 gaaactggac aaaccagcaa cagggaagag ccggaaaaac tgacgcgctt cgcttgtcca
     3121 acgcctcacg ggacgcgaaa aaattccgcg tcccgttcac cgttttctga tgaga
//
