LOCUS       NZ_CP034824             3904 bp    DNA     circular CON 30-JUL-2023
DEFINITION  Salmonella sp. SSDFZ54 plasmid pTB505, complete sequence.
ACCESSION   NZ_CP034824
VERSION     NZ_CP034824.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10689135
            Assembly: GCF_004010735.1
KEYWORDS    RefSeq.
SOURCE      Salmonella sp. SSDFZ54
  ORGANISM  Salmonella sp. SSDFZ54
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 3904)
  AUTHORS   Tang,B., Chang,J., Zhang,L., Liu,L., Xia,X., Hassan,B.H., Jia,X.,
            Yang,H. and Feng,Y.
  TITLE     Carriage of Distinct mcr-1-Harboring Plasmids by Unusual Serotypes
            of Salmonella
  JOURNAL   Adv Biosyst 4 (3), e1900219 (2020)
   PUBMED   32293141
REFERENCE   2  (bases 1 to 3904)
  AUTHORS   Tang,B., Chang,J., Ma,Y., Zhang,L. and Xia,X.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-JAN-2019) Institute of Quality and Standard for
            Agro-products, Zhejiang Academy of Agricultural Sciences, 198
            Shiqiao Road, Hangzhou, Zhejiang 310021, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: HGAP v. NOV-2018
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 320.0x
            Sequencing Technology             :: PacBio RSII
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 07/30/2023 10:35:31
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,141
            CDSs (total)                      :: 5,019
            Genes (coding)                    :: 4,864
            CDSs (with protein)               :: 4,864
            Genes (RNA)                       :: 122
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 87
            ncRNAs                            :: 13
            Pseudo Genes (total)              :: 155
            CDSs (without protein)            :: 155
            Pseudo Genes (ambiguous residues) :: 0 of 155
            Pseudo Genes (frameshifted)       :: 53 of 155
            Pseudo Genes (incomplete)         :: 113 of 155
            Pseudo Genes (internal stop)      :: 33 of 155
            Pseudo Genes (multiple problems)  :: 39 of 155
            Pseudo Genes (short protein)      :: 1 of 155
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP034824.1.
            Bacteria and source DNA available from Biao Tang.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3904
                     /organism="Salmonella sp. SSDFZ54"
                     /mol_type="genomic DNA"
                     /strain="SSDFZ54"
                     /isolation_source="feces"
                     /db_xref="taxon:2500542"
                     /plasmid="pTB505"
                     /geo_loc_name="China:Zhejiang"
                     /collection_date="2018-03"
     gene            complement(212..1231)
                     /locus_tag="EOS97_RS26535"
                     /old_locus_tag="EOS97_26535"
     CDS             complement(212..1231)
                     /locus_tag="EOS97_RS26535"
                     /old_locus_tag="EOS97_26535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001271373.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="WP_032329766.1"
                     /translation="MSAALQYFEENLPRRPYHTDDLAFGLRISGKGRALLARYIQQNQP
                     HAQFWLVFDVDREGAAIDWSDRNAPAPNITVKNPVNGHAHLLYALNIAVRTAPDASVKA
                     LKYAAAVERSLCEKLCADVNYSGLICKNPFHLEWQVMEWREEAYTLDELADYLDLSASA
                     RRSIDKHYGMGRNCHLFEMTRKWAYRAIRQGWPAFSQWLDAVIQRVEMYNASLPVPLSP
                     PECRAIGKSIAKYTHRNFTPETFAQYVADTHTPEIQAARGRKGGKANSSENQSDKGKKS
                     AAVRWTANDDKRRRALDMYILGASTEDIAVAVGVSSRTIRRWMDNSGEWLTKKQIVKF"
                     /name="replication initiation protein"
     gene            complement(1687..3237)
                     /locus_tag="EOS97_RS26540"
                     /old_locus_tag="EOS97_26540"
     CDS             complement(1687..3237)
                     /locus_tag="EOS97_RS26540"
                     /old_locus_tag="EOS97_26540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001624483.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobA/MobL family protein"
                     /protein_id="WP_001624483.1"
                     /translation="MASYHCTVKAGAKGSALKHADYISRSGEYKSYKSREDLEFSSSGN
                     MPSWAKKNPAELWKAADEFERKNGTAYREIEIALPRELTREQRIELVEDFVQKELGDRH
                     AYQYAIHNPPGAIDGKEQPHAHIMFCERINDGIERDPQQFFKRANSKSPERGGAKKASI
                     PQTAGERKAALVALRSRWADVQNEHLARYGHESRVDHRSLKEQGINRTPEVHLGPVQAA
                     SLNGEQIVAIQERRNAERELKTARDAANAIQQEQEQKQKIKAVEPVRSARSPELLLQYR
                     KVMKTVIQGEARLARLGDANPNALKEHKLLQNAKAKKDSLSEWSRRIYEGARYLDKLGR
                     NVVSAQRELRELQEQRNALNGIRGLFRGADKREIDARILEQKSVLETAEHERNEFRNKL
                     QQAESEWDKENAAFKRTEGYKYVGDLDRYREREILAAASLENTRQKVAEEVSVARSQML
                     SLEPELSISGDEKAQMRHELLAEMAQERQQQEEKALRIQRSWAREASRSNERDQDMER"
                     /name="MobA/MobL family protein"
     gene            3409..3855
                     /locus_tag="EOS97_RS26545"
                     /old_locus_tag="EOS97_26545"
     CDS             3409..3855
                     /locus_tag="EOS97_RS26545"
                     /old_locus_tag="EOS97_26545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000184721.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein TraD"
                     /protein_id="WP_000184723.1"
                     /translation="MTNREEWLSAKIAYINGLKSPSEQQRLLVLLAEKKNRTTTDEKTL
                     SALIRAEKTAEKAAAAKARVTAIIAAERKAAARAERKARDHELYKAAGLMIVAGLVDSK
                     TGKPKFSAAELVGALAGIAELPRNHPKWQEWERRGKELLTKDSA"
                     /name="conjugal transfer protein TraD"
     Typing          complement(457..1231)
                     /name="Col156"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="99.613"
                     /coverage="83.0"
                     /evalue="0.0"
     Typing          complement(1691..3237)
                     /name="MOBQ"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="93.629"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 cgctacgctc ggtcatgaga ctgcggcgag cacaaccacc tcaatcatgc ggtaagccgc
       61 accattgctg ggctgacagg agaaaaccgc cggaaagccc gctgctcaaa aagacgccga
      121 aaggcgctgt tatctgatat aggcttgttc atgtccgcga atttaaccat ccattaacaa
      181 aaacaggggg taattgtcat ttttctgtta attaaaattt aactatttgt ttcttggtta
      241 accattctcc agaattatcc atccagcgtc gaatagtccg gctgctaaca ccaaccgcca
      301 ctgcaatatc ttccgttgac gctcccaaga tatacatatc aagcgcccta cgacgtttgt
      361 cgtcgttagc agtccaccga acagcggcgc tttttttccc tttgtccgac tgattttctg
      421 acgaattggc cttcccgccc ttgcgaccgc gtgctgcctg aatttctggc gtgtgcgtat
      481 cagccacata ctgtgcgaaa gtttccggcg tgaagttcct gtgcgtgtat ttcgcaatgc
      541 tcttgccaat agcccgacat tcaggcggag aaagcggaac gggaagcgat gcgttgtaca
      601 tttcgacacg ctgaatcacg gcatcaagcc actgtgagaa tgctggccag ccctgacgaa
      661 tcgccctgta agcccatttg cgcgtcattt cgaacaggtg gcagtttcgc cccatcccgt
      721 aatgtttatc gatgctacga cgcgctgagg cgctcaaatc gagataatca gccagttcat
      781 cgagggtata ggcttcctcg cgccactcca tcacctgcca ttccaggtgg aacggatttt
      841 tgcaaatcag tccgctgtag ttcacatcag cacaaagttt ctcacacagc gaacgttcaa
      901 ccgctgcggc atatttcagc gccttaaccg acgcatcagg cgcggttctc acggcgatat
      961 tgagtgcata gagcaggtga gcgtgtccgt tcacaggatt tttaacggtg atgttcggcg
     1021 cgggggcgtt ccggtcgctc cagtcaatcg ctgccccctc gcggtcaacg tcaaaaacca
     1081 gccagaactg cgcatgaggc tggttctgct ggatgtaccg cgcaagcagc gcacgccctt
     1141 tgccggagat gcgaagacca aaagcgagat catccgtgtg atagggacgg cggggtaaat
     1201 tttcttcgaa gtattgaagc gcggcgctca tgtgttacga ttccttccag gttatcgacc
     1261 gacatcgccc ctgtattttc gtgacagtct tggcggatag acacgaattt caggggcgtt
     1321 tgtttttcag tcgcttacac tacccccaac gacaaaacct gtcgagtctt cccgcaaacc
     1381 cgatccattt accataactc ctgttgtacg taccccgtaa aacgccctca gtcgcttcct
     1441 gacgcaaaaa acgcaaaaag acaggaaaac accaggccaa accagaaaaa cgcgtcagaa
     1501 tcgctttcag agcgttgcat aactatgcac gaaagcgatg cgcgatctgt ttcgagcgtt
     1561 cagaagggcg aacgggtcaa aacagcaaac tttctcatca gaaaacggtg aacgggacgc
     1621 ggaatttttt cgcgttccgt gaaacgttgg cggggttcgg ggcgcagtcc cgatattgct
     1681 acattttcaa cgctccatat cttgatcacg ttcgttacta cgtgatgcct ccctggccca
     1741 ggatcgctgt atacgcagtg ccttttcctc ctgttgctgc cgttcctgcg ccatttctgc
     1801 cagtaactca tgtcgcattt gagctttttc atctccagat atactgagtt caggctccag
     1861 agataacatc tggctacggg caacggatac ttcttcagca accttttgcc tggtattctc
     1921 taaagatgcc gcggccagaa tctcacgttc tctgtacctg tccagatccc caacgtactt
     1981 atatccctcg gtacgcttaa aagcagcgtt ttctttgtcc cactcggatt cggcttgctg
     2041 tagcttgttc ctgaattcat tcctttcatg ttcagcggtt tccagcacac ttttttgctc
     2101 cagaatacgc gcatcaatct cccttttgtc agccccccga aacaggccac gaatcccatt
     2161 caaagcattg cgttgttcct gtagctcccg cagctccctt tgtgcggaaa cgacattacg
     2221 ccccagtttg tctaaatacc gtgccccttc atatattcgc ctgctccatt cggaaagaga
     2281 gtcttttttt gctttcgcat tctgaagcag cttatgttct ttgagcgcat tgggattggc
     2341 atcccctaaa cgagcaagcc ttgcttctcc ctgaatgacc gttttcataa ccttgcggta
     2401 ctgaagcaat aactccggtg aacgggctga acgaacaggc tcaactgcct tgattttttg
     2461 cttttgctcc tgttcctgct gaatggcatt tgcggcatct ctggcggtct tgagttcccg
     2521 ctcggcattc ctccgttcct ggattgcaac aatctgctca ccattgagac tggcggcctg
     2581 aacggggcca agatgaactt ccggcgtgcg attgataccc tgttctttca gagaacgatg
     2641 atctacgcgc gactcgtgac cgtatcgcgc aaggtgctca ttctgcacat ctgcccagcg
     2701 ggaacgcagc gcaacaaggg cggcttttcg ctctccggct gtctggggaa tactcgcttt
     2761 ttttgcgcct ccccgttctg gtgatttgct gttggcacgt ttaaaaaatt gctgcggatc
     2821 gcgttcaata ccatcattaa tccgctcgca aaacatgata tgcgcgtgtg gctgttcctt
     2881 tccgtcgatt gcacctggcg gattgtggat cgcgtactgg taggcatggc gatcgccaag
     2941 ttccttttgc acgaaatctt caacaagttc tatccgttgt tcgcgtgtca gttcacgcgg
     3001 taacgcgatc tcaatttcac ggtatgcagt cccgtttttt cgttcaaatt catctgcggc
     3061 tttccatagc tctgcgggat ttttcttcgc ccatgatggc atgttacctg atgacgaaaa
     3121 ttccagatcc tcccgcgatt tgtagctctt atattcgccg gatctggaaa tgtaatcagc
     3181 atgttttaag gcactgcctt ttgctccagc tttgacggtg caatggtagc ttgccatctg
     3241 ccttttagcc ctccgcagga gcgcacagtt tctcgacgaa ggagagaaac tactaagtgc
     3301 gcatccctga attaatcagg gatgatttta cggtctcaca cgcaggcaga caaggtgata
     3361 ttatgcacaa taacaactca cattaacggc aaaaatgcag aggtaagaat gacaaatcgt
     3421 gaagagtggt taagtgcaaa aattgcctac atcaacggac tgaaatcacc gtcagagcag
     3481 cagagattac ttgtgttact ggcagagaaa aaaaaccgaa caacgacgga tgaaaaaacg
     3541 ttgtccgcac tgatacgggc agaaaaaacc gcagagaaag cagccgcagc aaaagccagg
     3601 gtaacggcaa tcatagcggc agaacggaag gcagccgcaa gggcggaacg aaaggcgcgg
     3661 gatcatgaac tctacaaggc cgcaggcctc atgattgtgg caggactggt ggacagcaaa
     3721 accggaaaac caaagtttag tgctgccgaa ctggtaggcg cactcgcagg aatcgcagag
     3781 ctaccgcgca accacccaaa atggcaggaa tgggaaagac gcgggaagga gctactaacc
     3841 aaagacagtg cgtaagagcc tccgttcacg ttccgtttcc ctggtgcttc ctcgctcatt
     3901 cgct
//
